GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGCT
AAATGAATACTCTGTTCCTATTCAGGGATAACTCACATAAAGTGTTCTGT
TTTCTTTCAGTGAAAAACGCCCATATTTAGATCTTTCTCCTGGGATTCTT
GCCAGTTATCATCATCCTGATGAATCTTGCTCTGCTAGAGACCTTGCTCT
GCTAGACACCCACAGAGACCTTGGGTCATGGTCCTGTGGAGTTCACCATC
TACCCTTTCTCACACGTGCCTCTGTCTTGCTGTTACTGCTGATTTTAGTT
TAGCACCTTAGCATTGAATCACACTTCTTATCTGGCTAGACATAATATAT
TCATGTCAAATTGTTGAGATCAGTAAGCCGAGTCTACCAGAAGAGTCCTC
CATACCACCCACTGGCTACATTAACTGGAGTATAAGTGGTTGCTGTCTTT
TACTGTCATTCACGCACACTGAATCCTAGCATTTAGCCATCTTGTTGGCT
TCTTCTCTGCTATGTTAGCTTACGAAATACTATTAAATGGCTGCCTCTGT
TAACTTTTTCCTCATGGTAGTAAGATACTAAAATAAAACAGCGTAAGGGA
GGAAATATTGCTTTACGCTCAGAGTCCCAGAGGTTTTCGTTTAGCATGAT
GGGGAGGGCATGGAGGAGAAGAGCAACTCACACTGTGGCAGTCTGAAGAT
GGAAGGAAGAAGTGGGATGAAGTGGAAAGGAGAAGGGACAGGAGAAAAGG
AGAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGG
TGTTGAATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTC
GTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGA
TTGATGATTGCTCTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATT
GAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCA
TAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATTTTGTGGAATAGTTT
GTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCTGTCTGGTCCTGGGTTTTTTTTGGCTGGGAGAGTATTAATAACT
GCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATC
CTGACTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCAT
CCAGGTTTTTCAGTTTTGTTGAGTATAACCTTTTGTAGAAGGATCTGATG
GTGTTTTGGATTTCTTCACGATCTGTTGTTATGTCTCC

Query= MSMg01no547_f16.b1 MSMg01no547_f16.b1 CHROMAT_FILE:
MSMg01no547_f16.b1 PHD_FILE: MSMg01no547_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:58 2005
         (662 letters)



>mm_chr4_49184084_49185150
          Length = 1067

 Score = 1176 bits (608), Expect = 0.0
 Identities = 648/664 (97%), Gaps = 7/664 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgctaaatgaatactctgttcctattcagggataactcacataaagtgttctg 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcttgctaaatgaatgctctgttcctattcagggataactcacataaagtgttctg 659

                                                                       
Query: 65  ttttctttcagtgaaaaacgcccatatttagatctttctcctgggattcttgccagttat 124
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttttctttcagtgaaaaacacacatatttagatctttctcctgggattcttgccagttat 599

                                                                       
Query: 125 catcatcctgatgaatcttgctctgctagagaccttgctctgctagacacccacagagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 catcatcctgatgaatcttgctctgctagagaccttgctctgctagacacccacagagac 539

                                                                       
Query: 185 cttgggtcatggt-cctgtggagttcaccatctaccctttctcacacgtgcctctgtctt 243
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cttgggtcatggtccct-tggagttcaccatctaccctttctcacacgtgcctctgtctt 480

                                                                       
Query: 244 gctgttactgctgattttagtttagcaccttagcattgaatcacacttcttatctggcta 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gctgttactgctgattttagtctagcaccttagcattgaatcacacttcttatctggcta 420

                                                                       
Query: 304 gacataatatattcatgtcaaattgttgagatcagtaagcc-----gagtctaccagaag 358
           ||||||||||||||||||||||| ||||||||||||||| |     ||||||||||||||
Sbjct: 419 gacataatatattcatgtcaaatggttgagatcagtaagtcttatagagtctaccagaag 360

                                                                       
Query: 359 agtcctccataccacccactggctacattaactggagtataagtggttgctgtcttttac 418
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 359 attcctccataccacccactggctacattaactgtagtataagtggttgctgtcttttac 300

                                                                       
Query: 419 tgtcattcacgcacactgaatcctagcatttagccatcttgttggcttcttctctgctat 478
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgtcattcacacacactgaatcctagcatttagccatcttgttggcttcttctctgctat 240

                                                                       
Query: 479 gttagcttacgaaatactattaaatggctgcctctgttaactttttcctcatggtagtaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gttagcttacgaaatactattaaatggctgcctctgttaactttttcctcatggtagtaa 180

                                                                       
Query: 539 gatactaaaataaaacagcgtaagggaggaaatattgctttacgctcagagtcccagagg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gatactaaaataaaacagcgtaagggaggaaatattgctttacgctcagagtcccagagg 120

                                                                       
Query: 599 ttttcgtttagcatgatggggagggcatggaggagaagagcaactcacactgtggcagtc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ttttcgtttagcatgatggggagggcatggaggagaagagcaactcacactgtggcagtc 60

               
Query: 659 tgaa 662
           ||||
Sbjct: 59  tgaa 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1067
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1057
Effective search space:   689164
Effective search space used:   689164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)