XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCAGC
AGTACCTAAAACTTCTAAATCTTGGGATTCATTCCACCAGTAAGAACAGT
TCTCCTGAATGCATTTCTGAAAGGAATTGTGACAGAAGTAGGAACTATTT
TAGCTTAACAATTTTCAGTATCTGAAATAAATTATTATTCTAGAGTAACT
GTTAGAACAAGAGAGGAAATTGGGTATATTCCATAGCTTCATATTTATTT
AGTGCCTGCTTCCTATAACACTTTCTTTTTGATTTTATTGATTTTAAGTA
TGAATTTTAAGCATGTGGAAGATCCTATAAAATATAAAGCAAATGCCTCT
TACATAATTAAGTGAAATTATAATTCTCTCAGTGTTGGTTTATTTTGAAA
CTTAATATCCAACAGAGATCTTCATACTAGAGTGTAGGTAAATACAAAAT
ACAAGGATGCTACTTGCCTGATACTTCATTACCAGAATTGCTTTTCTCCA
ACTGTATAAATTATTATTTGATTGTGTACCTTAAAGTATGAATTACTCTA
ATTCTTCACATTTATTACAGCCAGAAAAAACATGCAAAGCTTTGTCCAAT
TACCACACAAATTTAAATCAAATTGATCAACGGAATTTGTAAAAGTAATA
ACTATTATATAATATTTACCTTAAAAGGTCAATTTGAAACAATCCTATAT
ATTAAAGTGAATAATCATGTACATTTAGCAATTATATTAAAAGAAATATG
AG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGTTTGCAAGAATTTTACTGGGTATTTTTGCATCAATAT
TCATAAGTGAAATTGGTCTGAAGTCCTCTTTGTTGGATCTTTGTGTGGTT
TATATATAAGTGCAACTGTGACTTCATAGAACAAATTAGGTAGTGTTACT
TCTGTTTATATTTTGTTTGTTTGTTTGTTTAAGACAGGGTTTCTCTGTGT
AGCCCTGGCTGTCCTGGAACTCACTATGTAGAGCAGGCTGGCCTCAAACT
CAGAAATCTGCCTGCCTCTGCCTCCAGAGTGCTTGGATTAAAGGTGTGCA
CCACAACTGCCCGGCTTCTTTTTCTATTTTGTGGAATTATTTGAAGAGTA
TTGGTATAAGGTCTCTTTTGAAGAAGATCTGATAGAATTCTGCACTGGGC
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAGAAAGAC
TTTTAATGACTGATTCTATTTCTTAAGAAGATATGGGTTATAAAATGAGA
TACACTGACTCTAATAAAAAAAAAAGTGGGGAAGAACCTCAAACATGTGG
GCACAGGGGAAAGTTTACTGAACAGAACACCCATGGGTTATGGTCCCAAA
TCAACAATTGACAAATGGGACCTCCTAAAATTGAAAAGCTTCTGGAAGTC
AATGGACACTGGCCATAGGACAAAATGACCACCCACAGAATGGGAAAAGA
A

Query= MSMg01no547_g05.b1 MSMg01no547_g05.b1 CHROMAT_FILE:
MSMg01no547_g05.b1 PHD_FILE: MSMg01no547_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:00 2005
         (696 letters)



>mm_chr4_27913543_27914637
          Length = 1095

 Score = 1286 bits (665), Expect = 0.0
 Identities = 686/693 (98%), Gaps = 3/693 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcagcagtacctaaaacttctaaatcttgggattcattccaccagtaagaac 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gaattctttcagcagcagctaaaacttctaaatcttgggattcattccaccagtaagaac 836

                                                                       
Query: 65  agttctcctgaatgcatttctgaaaggaattgtgacagaagtaggaactattttagctta 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 835 agttctcctgaatgcatttctgaaaggaattgtggcagaagtaggaactattttagctta 776

                                                                       
Query: 125 acaattttcagtatctgaaataaattattattctagagtaactgttagaacaagagagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 acaattttcagtatctgaaataaattattattctagagtaactgttagaacaagagagga 716

                                                                       
Query: 185 aattgggtatattccatagcttcatatttatttagtgcctgcttcctataacactttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aattgggtatattccatagcttcatatttatttagtgcctgcttcctataacactttctt 656

                                                                       
Query: 245 tttgattttattgattttaagtatgaattttaagcatgtggaagatcctataaaatataa 304
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tttgattttattga-tttaaatatgaattttaagcatgtggaagatcctataaaatataa 597

                                                                       
Query: 305 agcaaatgcctcttacataattaagtgaaattataattctctcagtgttggtttattttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agcaaatgcctcttacataattaagtgaaattataattctctcagtgttggtttattttg 537

                                                                       
Query: 365 aaacttaatatccaacagagatcttcatactagagtgtaggtaaatacaaaatacaagga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aaacttaatatccaacagagatcttcatactagagtgtaggtaaatacaaaatacaagga 477

                                                                       
Query: 425 tgctacttgcctgatacttcattaccagaattgcttttctccaactgtataaattattat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgctacttgcctgatacttcattaccagaattgcttttctccaactgtataaattattat 417

                                                                       
Query: 485 ttgattgtgtaccttaaagtatgaattactctaattcttcacatttattacagccagaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttgattgtgtaccttaaagtatgaattactctaattcttcacatttattacagccagaaa 357

                                                                       
Query: 545 aaacatgcaaagctttgtccaattaccacacaaatttaaatcaaattgatcaacggaatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaacatgcaaagctttgtccaattaccacacaaatttaaatcaaattgatcaacggaatt 297

                                                                       
Query: 605 tgtaaaagtaataactattatataat-atttaccttaaaaggtcaatttgaaacaatcct 663
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 296 tgtaaaagtaataactattatataataattt-ccttaaaaggtcaatttgaaacaatcct 238

                                            
Query: 664 atatattaaagtgaataatcatgtacatttagc 696
           |||||||||||||||||||||||||||||||||
Sbjct: 237 atatattaaagtgaataatcatgtacatttagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1095
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1085
Effective search space:   744310
Effective search space used:   744310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)