BAC Information

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BAC

Clone NameMSMg01-547G15
Chromosome4 (Build37)
Map Location 38,362,658 - 38,517,075
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC277771, LOC100039448
Downstream geneLOC665520, LOC100039487, 1700009N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547G15.T7 (MSMg01no547_g15.b1)MSMg01-547G15.TJ (MSMg01no547_g15.g1)
ACCAG612009AG612010
length744748
length of high quality
(start - end)		615 (40 - 654)676 (66 - 741)
definitionCHROMAT_FILE: MSMg01no547_g15.b1 PHD_FILE: MSMg01no547_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:02 2005CHROMAT_FILE: MSMg01no547_g15.g1 PHD_FILE: MSMg01no547_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,362,658 - 38,363,238)(38,516,435 - 38,517,075)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAAAGAGAAGAATTTAGAGGGTGAAAGAGAAGAAATCTAGAGGGTGAAAG
AGAAGAAATCTAGAGGGTGAAAGAGAAGAAATCTAGAGGGTTAAAGAGAA
GAAATCTAGAGGGTAACCGCCACTAGGCAAATAGCACTAAGACACATGAA
GAATAACACAGAATATATATTCATAGCTCAGAGGAGTGCAGGGAGAAAGA
TTTTAGACCATTTAGCCACACTACCAATCTAGGACAGAAAACTTTTTAAA
CTATGATGTCTGCTTTTTTATTTTACTATTTCTGTTTTCCATTTGTATTT
TAGTCATTCATAAAAGCCCAAATATTAGTCACTGATGTAAATTGTAAAAA
GAGCACATATTTTCATAGAATTTTAAACTGTTAGATGAAATATAAATGAA
ATGTGTATGACAGAGTTTTAGGTTTCAACTTTTTATAGTATCACAAAATT
TAAAACTATATCTGTCTTACCATTTCCTGATTTTAGTTGAGAATTCCATT
TTTCTGTTGCATGCTATTAATAATGGAATGTCTTATACTCTAAGGTACTA
AGGGATTGCTATTTTTATTACTATAATACTCTTGACCTATATTAGTGGAC
AATGCCATGTATTTTGTGAACACTTGTACTATTTCAGATCTTGTTTTATG
GTATTGTAAACAACTCCAGTGCAAAGGATGATACTTTTAAATGT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGGACCTTTGGAAGAGCAGTCAGTGCTCTTTCCTG
CCGAGACATCTCACCAGCTCCTATGTTAAACACTTAAATAAATATGATAA
AAATCTTTAAAGAATACAGAAAGAGAATAGAGGCTAGGGACACACATAAT
TAGCTCAATCACAGTATGACTGGACTCATCAGAGAACCTGTAATATAAAT
AATTTATCTTACATTTTCCAGATTATCTTAATTCTCCTTCCTGAATTCAG
AATATGAAATTTCCTATTGGGCATGCAGGTCTATTTAGAATCATTACTGT
ATATAAAGTGACTGGTTAAGAAGCAAGAAGATATTACAGAAAACAATAGA
AATTCAAATGTAATGTGTAATCTTTAAATAACAGAGCTTTTCTGGCTTTA
GCCTTCATGATTTATAATGTAGCCAAACTGTCTATGTACTCTCCATTTTC
AGATTGTGGATGAAATTTGACCCACCAAATTCCTACTCCTACCATCATGT
CCTTCCTGCCTGCTGCCATGTCTTCTGTCCACTGATCAACTGCATCCAAC
TGTAATTGTAAGGCAAAATATCCTTTCACTTAGTTAATTTTATCAAGGTA
TTTTATCACAAGAAAAAGTAAAGATAATGAAGGTAGTGTGCAGTGTGAAA
ATAGTGGTAGGACCCCCCCCCAACATCTACATAAAACTCAGTGAAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_g15.b1 MSMg01no547_g15.b1 CHROMAT_FILE:
MSMg01no547_g15.b1 PHD_FILE: MSMg01no547_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:02 2005
         (615 letters)



>mm_chr4_38362424_38363438
          Length = 1015

 Score = 1100 bits (569), Expect = 0.0
 Identities = 578/581 (99%)
 Strand = Plus / Plus

                                                                       
Query: 35  aaagagaagaaatctagagggtgaaagagaagaaatctagagggtgaaagagaagaaatc 94
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aaagagaagaaatttagagggtgaaagagaagaaatctagagggtgaaagagaagaaatc 294

                                                                       
Query: 95  tagagggttaaagagaagaaatctagagggtaaccgccactaggcaaatagcactaagac 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tagagggttaaagagaagaaatctagagggtaaccgccactaggcaaatagcactaagac 354

                                                                       
Query: 155 acatgaagaataacacagaatatatattcatagctcagaggagtgcagggagaaagattt 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acatgaagaataacacagaatatatattcatagctcagaggagtgcagggagaaagattt 414

                                                                       
Query: 215 tagaccatttagccacactaccaatctaggacagaaaactttttaaactatgatgtctgc 274
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tagaccatttagtcacactaccaatctaggacagaaaactttttaaactatgatgtctgc 474

                                                                       
Query: 275 ttttttattttactatttctgttttccatttgtattttagtcattcataaaagcccaaat 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttttttattttactatttctgttttccatttgtattttagtcattcataaaagcccaaat 534

                                                                       
Query: 335 attagtcactgatgtaaattgtaaaaagagcacatattttcatagaattttaaactgtta 394
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 attagtcactgatgtaaattgtaaaaagagcatatattttcatagaattttaaactgtta 594

                                                                       
Query: 395 gatgaaatataaatgaaatgtgtatgacagagttttaggtttcaactttttatagtatca 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gatgaaatataaatgaaatgtgtatgacagagttttaggtttcaactttttatagtatca 654

                                                                       
Query: 455 caaaatttaaaactatatctgtcttaccatttcctgattttagttgagaattccattttt 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 caaaatttaaaactatatctgtcttaccatttcctgattttagttgagaattccattttt 714

                                                                       
Query: 515 ctgttgcatgctattaataatggaatgtcttatactctaaggtactaagggattgctatt 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ctgttgcatgctattaataatggaatgtcttatactctaaggtactaagggattgctatt 774

                                                    
Query: 575 tttattactataatactcttgacctatattagtggacaatg 615
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tttattactataatactcttgacctatattagtggacaatg 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_g15.g1 MSMg01no547_g15.g1 CHROMAT_FILE:
MSMg01no547_g15.g1 PHD_FILE: MSMg01no547_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:03 2005
         (676 letters)



>mm_chr4_38516435_38517510
          Length = 1076

 Score = 1193 bits (617), Expect = 0.0
 Identities = 635/641 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacctttggaagagcagtcagtgctctttcctgccgagacatctcaccagctcctatg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 641 aggacctttggaagagcagtcagtgctctttcctgccgagccatctcaccagctcctatg 582

                                                                       
Query: 61  ttaaacacttaaataaatatgataaaaatctttaaagaatacagaaagagaatagaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 581 ttaaacacttaaataaatatgataaaaatctttaaagaatacagaaagagaatagaggcg 522

                                                                       
Query: 121 agggacacacataattagctcaatcacagtatgactggactcatcagagaacctgtaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agggacacacataattagctcaatcacagtatgactggactcatcagagaacctgtaata 462

                                                                       
Query: 181 taaataatttatcttacattttccagattatcttaattctccttcctgaattcagaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 taaataatttatcttacattttccagattatcttaattctccttcctgaattcagaatat 402

                                                                       
Query: 241 gaaatttcctattgggcatgcaggtctatttagaatcattactgtatataaagtgactgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaaatttcctattgggcatgcaggtctatttagaatcattactgtatataaagtgactgg 342

                                                                       
Query: 301 ttaagaagcaagaagatattacagaaaacaatagaaattcaaatgtaatgtgtaatcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttaagaagcaagaagatattacagaaaacaatagaaattcaaatgtaatgtgtaatcttt 282

                                                                       
Query: 361 aaataacagagcttttctggctttagccttcatgatttataatgtagccaaactgtctat 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 281 aaataacagagcttttctggctttagccttcatgatttataatgtagccaaactgtttat 222

                                                                       
Query: 421 gtactctccattttcagattgtggatgaaatttgacccaccaaattcctactcctaccat 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gtactctccatttccagattgtggatgaaatttgacccaccaaattcctactcctaccat 162

                                                                       
Query: 481 catgtccttcctgcctgctgccatgtcttctgtccactgatcaactgcatccaactgtaa 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 catgtccttccttcctgctgccatgtcttctgtccactgatcaactgcatccaactgtaa 102

                                                                       
Query: 541 ttgtaaggcaaaatatcctttcacttagttaattttatcaaggtattttatcacaagaaa 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ttgtagggcaaaatatcctttcacttagttaattttatcaaggtattttatcacaagaaa 42

                                                    
Query: 601 aagtaaagataatgaaggtagtgtgcagtgtgaaaatagtg 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  aagtaaagataatgaaggtagtgtgcagtgtgaaaatagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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