XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
TTGGAATTTCCCTCTGAAATATTTAATGTGTGTCCTAGTTACTTTTCTAT
TGCTATGAAGAGACGCCATAACCAAAGCAATTTTTAAAGAAAAATTCTTA
ACGGGAGCTTGCAGTTTTAGAGGTAGTCCATGGCCATCTTGATGGGGATC
ATGGCACAGGCAGGCAGGGAGGCAGGCAGGCATGGTGCTGAAGTAGTAAC
CAAGAGCCCATATCTCAGCCACAAGCATGAAGAAGAGAGAGAGAGATAAT
GGGGAATTGGCAAGGATTTTTGAAACCTCAAAACATGTCCCCACTGACAT
ACCTTTTCCAAGAAGCCACACATCCTAACTTTTCACAAACAACTCCTCCA
ATTGGGGATTAATTATTCAAACATATGAGCCTATAGGGGTCATTTTTATG
AAACTACCAATAGGACATTTTGTTCTAGTGGAATTACAGTATCTATCTGC
ATATTGAAATGCCCCTTCTGACTTCAAGCAATAAATTAATGTGATCCCTC
TGGTCATGCAATTGATCATGGAACAGGGACTGCTAATCTCAACCCTAAGA
ACAAAACAATAAAAATAGCAATAAACAAAGCAATAAAAAATAACAATAAA
GCACTTTGTGATTCATGAAGTCAATGCAATTTGTATAANAAAATATTAAG
GCTAGAAGACACTAAGAATGCTATTATTAAGTTTTTGG

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTTAATACCAGAAGTCAATTTAAGCACATATACA
ATTTGAAACTTTGTTCAATACCTTTAGCCATTGATCAAGATAAATTAAAA
CTACTTTGAGCTTTCATCATACAGGAGTTAGAATGGAGAAGATCAATAAA
GGAAATGACAGCTCATGTTGATGAGGAAGTAAAGAAAGGTAGCCATTTAT
CCATTTCTGATGGGAGTGCAAACTTGTAGAAATCAGCATAGTGGTTCCTC
AGGAATTTGAGAATAGATATACCTAAATATCCAGCTATACCACTTATAGG
AATATACACAAATGCCTCTAAATGCTTCTATAGCTATATTTTAAAATTTG
TTTCATTCATAATAGCAAGGAATGAAGAACGGCTTAGATATCCATGAATT
TATTAATGGATAAAAATGTGGTTTATTTGCACAATGAAGTATTACTCAAT
ATTAAAATAATGAAATAATGAAATTTGCAGCTAAAAAGATTGAGTTAGAA
AGTCTTCCTTATGGAGGTAACTCAGACAACCAAAGGGAAATATTGCATGC
TTTCTAATTTTTGTAGTTAATAGCTTGTAATGTTTTGATACGTGTGCTAT
AATCTGAATAGCCACAGATGTTAAATACATAGTAAGGGAGTAGATGGATA
AAAGAACCTCCCAATAAAGAGGAAATAGAGTAGAN

Query= MSMg01no547_g16.b1 MSMg01no547_g16.b1 CHROMAT_FILE:
MSMg01no547_g16.b1 PHD_FILE: MSMg01no547_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:03 2005
         (702 letters)



>mm_chr4_92865007_92866109
          Length = 1103

 Score =  845 bits (437), Expect = 0.0
 Identities = 471/483 (97%), Gaps = 5/483 (1%)
 Strand = Plus / Minus

                                                                        
Query: 221  cccatatctcagccacaagcatgaagaagagagagagagataatggggaattggcaagga 280
            ||||||||||||||||||| ||||||   ||||| |||||||||||||||||||||||||
Sbjct: 1103 cccatatctcagccacaagaatgaag--cagagacagagataatggggaattggcaagga 1046

                                                                        
Query: 281  tttttgaaacctcaaaacatgtccccactgacataccttttccaagaagccacacatcct 340
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1045 tttttgaaacctcaaaacatgtccccactgacacaccttttccaagaagccacacatcct 986

                                                                        
Query: 341  aacttttcacaaacaactcctccaattggggattaattattcaaacatatgagcctatag 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 985  aacttttcacaaacaactcctccaattggggattaattattcaaacatatgagcctatat 926

                                                                        
Query: 401  gggtcatttttatgaaactaccaataggacattttgttctagtggaattacagtatctat 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  gggtcatttttatgaaactaccaataggacattttgttctagtggaattacagtatctat 866

                                                                        
Query: 461  ctgcatattgaaatgccccttctgacttcaagcaataaattaatgtgatccctctggtca 520
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 865  ctgcatattgaaatgccccttctgacttcaagcaataaattgatgtgatccctctggtca 806

                                                                        
Query: 521  tgcaattgatcatggaacagggactgctaatctcaaccctaagaacaaaacaataaaaat 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805  tgcaattgatcatggaacagggactgctaatctcaaccctaagaacaaaacaataaaaat 746

                                                                        
Query: 581  agcaataaacaaagcaataaaaaataacaataaagcactttgtgattcatgaagtcaatg 640
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745  agcaataaacaaagcaataaaaaataacaacaaagcactttgtgattcatgaagtcaatg 686

                                                                        
Query: 641  caatttgtat-aanaaaa-tattaaggctagaagacactaagaatgctattattaagttt 698
            |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  caatttgtattaa-aaaagtattaaggctagaagacactaagaatgctattattaagttt 627

               
Query: 699  ttg 701
            |||
Sbjct: 626  ttg 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1103
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1093
Effective search space:   756356
Effective search space used:   756356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)