Query= MSMg01no547_j22.b1 MSMg01no547_j22.b1 CHROMAT_FILE:
MSMg01no547_j22.b1 PHD_FILE: MSMg01no547_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:18 2005
(611 letters)
>mm_chr4_48953571_48954581
Length = 1011
Score = 1067 bits (552), Expect = 0.0
Identities = 591/606 (97%), Gaps = 6/606 (0%)
Strand = Plus / Plus
Query: 7 attcctcatggtttctgcctc-atatcctacttgagctccattgctgacttctctcagtg 65
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 211 attcctcatggtttctgcctcaatatcctacttgagctccattgctgacttctctcagtg 270
Query: 66 atgtggctgtgacctggaagtataagccaaataaaccccttttcttttcttttctccgtt 125
||||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||
Sbjct: 271 atgtggctgtgacctggaagtgtaagccaaataaacccc-tttc----cttttcgccgtt 325
Query: 126 gtttttgaccagagtgtcttctcacacagcacaatggaactagaacagtaactgttctca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtttttgaccagagtgtcttctcacacagcacaatggaactagaacagtaactgttctca 385
Query: 186 cttcctgcttttcagatgccagaaaagccgcatagaggtaatagaaattcctgctttgag 245
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct: 386 cttcctgcttttcagatgccagaaaagccacatagaggtaatagaaatccctgctttggg 445
Query: 246 cctctgcatgcttcatttggttcccagccaggaggctgaccatctagcctctggatgctt 305
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 cctctgcatgcttcatttggttcccagctaggaggctgaccatctagcctctggatgctt 505
Query: 306 ggagttagatgcccaagttagacagtactatagctggaatggaaatatcccctagaggct 365
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 506 ggagttagatgcccaacttagacagtactatagctggaatggaaatatcccctacaggct 565
Query: 366 tacattataaatgcctcctgctttgtgctaatttgtgagcttatgggacctttaggaatt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacattataaatgcctcctgctttgtgctaatttgtgagcttatgggacctttaggaatt 625
Query: 426 tgggtacagttagtagatgcaggttgctagagatgggcctttggaagctatacttgcctc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgggtacagttagtagatgcaggttgctagagatgggcctttggaagctatacttgcctc 685
Query: 486 accttgtttttgtctgatttgcttcataacctaccatgaagtgaacagtagcctccactg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 accttgtttttgtctgatttgcttcataacctaccatgaagtgaacagtagcctccactg 745
Query: 546 ccacattacaccccaaccctctctaccatttcttccccaccatgataaaccaaaacctta 605
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 746 ccacattacaccccaaccctctctaccatttcttccccaccatgatagaccaaaacctta 805
Query: 606 tgaaaa 611
||||||
Sbjct: 806 tgaaaa 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_j22.g1 MSMg01no547_j22.g1 CHROMAT_FILE:
MSMg01no547_j22.g1 PHD_FILE: MSMg01no547_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:18 2005
(571 letters)
>mm_chr4_49082181_49083151
Length = 971
Score = 1065 bits (551), Expect = 0.0
Identities = 566/571 (99%)
Strand = Plus / Minus
Query: 1 tcagaaagacaggagggttggcccagcatcacaaagctaatgaatgacacaactgaggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tcagaaagacaggagggttggcccagcatcacaaagctaatgaatgacacaactgaggcc 712
Query: 61 cttagcttaacagagcagggaaatagaattagcctgtttagaagttgtggttttatttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cttagcttaacagagcagggaaatagaattagcctgtttagaagttgtggttttatttat 652
Query: 121 gccatagcatgagcaaaactttccagataagcataaggaggagcaaactgtttgattaaa 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 651 gccatagcatgagcaaaactttccagataagcataagaaggagcaaactgtttgattaaa 592
Query: 181 gatgacatgtcaaatgtattcattttggggattcatttcttaaggttcaagttggcaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gatgacatgtcaaatgtattcattttggggattcatttcttaaggttcaagttggcaaga 532
Query: 241 tgccaaattgaaaactaaatccctagtaagacgttcacagatgaataccttccctaggaa 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 531 tgccaaattgaaaactaaatccctagtaatacgttcacagatgaataccttccctaggaa 472
Query: 301 acttgggtaacatctcatttcgcatcaagaatgttgcctggcttcaaagtattatgcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acttgggtaacatctcatttcgcatcaagaatgttgcctggcttcaaagtattatgcaaa 412
Query: 361 tgtgagaccctcgggtctttgaggagaacaaggagagggggatgagatgggcaggttggg 420
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 411 tgtgagaccctccggtctttgaggagaacaaggagtgggggatgagatgggcaggttggg 352
Query: 421 gctggaaaatgagaaggtaatctttgcagaggctcctgagtgacatgtacatgaagcgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gctggaaaatgagaaggtaatctttgcagaggctcctgagtgacatgtacatgaagcgtg 292
Query: 481 agtttcaatttggtagcaattcattgcacaagctagtttttgtgatccaagttcccagcc 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agtttcaatttgatagcaattcattgcacaagctagtttttgtgatccaagttcccagcc 232
Query: 541 cccacttcttgacttggggagttgttttgca 571
|||||||||||||||||||||||||||||||
Sbjct: 231 cccacttcttgacttggggagttgttttgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
