Query= MSMg01no547_k12.b1 MSMg01no547_k12.b1 CHROMAT_FILE:
MSMg01no547_k12.b1 PHD_FILE: MSMg01no547_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:20 2005
(702 letters)
>mm_chr4_98879761_98880860
Length = 1100
Score = 1257 bits (650), Expect = 0.0
Identities = 672/680 (98%), Gaps = 2/680 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtaaaaactcgctcaagcaaagaaaccgacctttaaaaaaaaaacttctcacc 64
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 806 gaattcagtaaaaacacgctcaagcaaagaaactgacctttaaaaaaaaaacttctcacc 747
Query: 65 atctccctccctgtggtttactctttacctacatcttctgaccaactggtctccagactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 atctccctccctgtggtttactctttacctacatcttctgaccaactggtctccagactt 687
Query: 125 ccctcagaagaggaagagaatgtgatgtgaggcactgcaagagctcacatctaacaagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccctcagaagaggaagagaatgtgatgtgaggcactgcaagagctcacatctaacaagaa 627
Query: 185 cttagtgcttcactgtcacacatcaatcatgggacacatcctcccctgctattctcttcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cttagtgcttcactgtcacacatcaatcatgggacacatcctcccctgctattctcttcg 567
Query: 245 ctgtgagacctcatggcggactgatttgctctatgctcagtacagaagacgacaatggtc 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 566 ctgtgagacctcatggcggactgatttgttctatgctcagtacagaagacgacaatggtc 507
Query: 305 cagtgcttctcaaaagaccctgacattttctctttttccacaggcacatgggagcttgca 364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagtgcttctcaaaggaccctgacattttctctttttccacaggcacatgggagcttgca 447
Query: 365 tagttcaacacatcagaagacgaacctgtacagtggactttttcttttgactacttagct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tagttcaacacatcagaagacgaacctgtacagtggactttttcttttgactacttagct 387
Query: 425 tcacttaaccactttccagttgtcttcataaacgtgtccattacatgagactccttgcta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcacttaaccactttccagttgtcttcataaacgtgtccattacatgagactccttgcta 327
Query: 485 tctttgctttctcttactgatgctgagtcagggtactatggggcagacaggaagaaactg 544
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 326 tctttgctttctcttactgatgctgagtcagggtactatggggcagtcaggaagaaactg 267
Query: 545 aagatataaaaaaaaaactcaagccaggaggcttggaggaggagcagtaattagcactga 604
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagatat--aaaaaaaactcaagccaggaggcttggaggaggagcagtaattagcactga 209
Query: 605 cacacgtttgaaaaagccatatggaaacctagtattttataactttccttctcacacaca 664
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 208 cacacgtttgaaaaagccatatggaaacctagtattttataactttccttcacacacaca 149
Query: 665 cacacacacacacacacaca 684
||||||||||||||||||||
Sbjct: 148 cacacacacacacacacaca 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1100
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1090
Effective search space: 754280
Effective search space used: 754280
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no547_k12.g1 MSMg01no547_k12.g1 CHROMAT_FILE:
MSMg01no547_k12.g1 PHD_FILE: MSMg01no547_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:20 2005
(629 letters)
>mm_chr4_98744503_98745531
Length = 1029
Score = 1201 bits (621), Expect = 0.0
Identities = 627/629 (99%)
Strand = Plus / Plus
Query: 1 agtttgctgtgggtccctgccaacagttgatttttctgactggtcaataaagagccggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttgctgtgggtccctgccaacagttgatttttctgactggtcaataaagagccggca 260
Query: 61 accaatggctgggcaggcggacagaggtaggacttccataggatggaccaagcagtaaag 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaatggctgagcaggcggacagaggtaggacttccataggatggaccaagcagtaaag 320
Query: 121 gagcaggtgggtgagccggctgaactgtaggtgcaaaggggaagtggccccatgggaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcaggtgggtgagccggctgaactgtaggtgcaaaggggaagtggccccatgggaggg 380
Query: 181 ctacccagaaggaagcagggcagcaaagataaaatacagattagaaagtgttaactcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacccagaaggaagcagggcagcaaagataaaatacagattagaaagtgttaactcagg 440
Query: 241 tatactggaggggagtgtgtgctagctgtgaggaggtttggaagtgcccaaccactgagc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tatactggaggggagtgtgtgctagctgtgaggaggtttggaagtgcccaaccattgagc 500
Query: 301 tagcttagggtatattaaaaataaggctgtacatttgtgccttttatgtggggactccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcttagggtatattaaaaataaggctgtacatttgtgccttttatgtggggactccag 560
Query: 361 agcattggggtgtctggaatcacaccaccccagccaggaagaatttaccactacaaaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcattggggtgtctggaatcacaccaccccagccaggaagaatttaccactacaaaaac 620
Query: 421 ctaaatatataaataaatggtttattgagagagaaacaaagagtcttgtctcttattcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaaatatataaataaatggtttattgagagagaaacaaagagtcttgtctcttattcaa 680
Query: 481 cccaagtggcctcaacccgtgttcctcatctgcagcctactgaatgagggattacagaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccaagtggcctcaacccgtgttcctcatctgcagcctactgaatgagggattacagaca 740
Query: 541 tatattacatcctggttgctatttcagttttataagccaaataataatatagtagtctct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatattacatcctggttgctatttcagttttataagccaaataataatatagtagtctct 800
Query: 601 tacttatgtgcattttcttcttttctgaa 629
|||||||||||||||||||||||||||||
Sbjct: 801 tacttatgtgcattttcttcttttctgaa 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
