Query= MSMg01no547_n07.b1 MSMg01no547_n07.b1 CHROMAT_FILE:
MSMg01no547_n07.b1 PHD_FILE: MSMg01no547_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:34 2005
(618 letters)
>mm_chr4_46441495_46442513
Length = 1019
Score = 1181 bits (611), Expect = 0.0
Identities = 617/619 (99%), Gaps = 1/619 (0%)
Strand = Plus / Plus
Query: 1 agctggtctacactgtgaaaccctgtctaaaagacaaaagaaaagaaaaagaactaccag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agctggtctacactgtgaaaccctgtctaaaagacaaaagaaaagaaaaagaactatcag 260
Query: 61 aacatctgtgacaggtgaacagacctcaggacagggccagtgtcctcagaagcacagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatctgtgacaggtgaacagacctcaggacagggccagtgtcctcagaagcacagtca 320
Query: 121 caactgagagcctggtccgactttagctacattcctgggagatatctctaagggtcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caactgagagcctggtccgactttagctacattcctgggagatatctctaagggtcagaa 380
Query: 181 ctgtgacccttatttctggtgacctagcctaaagaaagagaaggtttgctgttgagcccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgacccttatttctggtgacctagcctaaagaaagagaaggtttgctgttgagcccc 440
Query: 241 c-ataggggccgtgtgatgcatgccctaccgccagcctcctctagcatgcactgtctcca 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccataggggccgtgtgatgcatgccctaccgccagcctcctctagcatgcactgtctcca 500
Query: 300 tagtgatgggcagctccttccaagtgagcaggcctctttacctgttgaccccgtttagtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtgatgggcagctccttccaagtgagcaggcctctttacctgttgaccccgtttagtt 560
Query: 360 tacaggtgctacactgtcagactcttctccttccagctcagcgtgctcattaaacagcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaggtgctacactgtcagactcttctccttccagctcagcgtgctcattaaacagcct 620
Query: 420 tggctccttgcgtgtggaaacaggtttcaagcacagagcccctagcatcaggcaggatgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggctccttgcgtgtggaaacaggtttcaagcacagagcccctagcatcaggcaggatgg 680
Query: 480 caacataattttagctcctgagcaaaatgactctcacaatagcgtcagtacagtgtgcgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caacataattttagctcctgagcaaaatgactctcacaatagcgtcagtacagtgtgcgc 740
Query: 540 attaacatttgaatacactgcataataagcgtgctaattatagaagagaagactacttga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attaacatttgaatacactgcataataagcgtgctaattatagaagagaagactacttga 800
Query: 600 ggaataaaatgagctgtga 618
|||||||||||||||||||
Sbjct: 801 ggaataaaatgagctgtga 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_n07.g1 MSMg01no547_n07.g1 CHROMAT_FILE:
MSMg01no547_n07.g1 PHD_FILE: MSMg01no547_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:34 2005
(336 letters)
>mm_chr4_46672947_46673690
Length = 744
Score = 580 bits (300), Expect = e-170
Identities = 330/344 (95%), Gaps = 8/344 (2%)
Strand = Plus / Minus
Query: 1 ttcttcccacggatgcaatggggagcagtggcttctctagcgcatgtgagctgtgtgtta 60
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct: 544 ttcttcccacggatgcaatggggagcagtggcttctctagtgcatgtgaactgtgtttta 485
Query: 61 gtagccacagtcaagcggccatttcctcagtgccctgcctgtgctggtctcctcacacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtagccacagtcaagcggccatttcctcagtgccctgcctgtgctggtctcctcacacca 425
Query: 121 gcctgctgaaccgagagtcagggttggctgtctttttgtaagcagtgacttttgctgatc 180
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 424 gcctgctgaaccgaaagtcagggttggctgtcttcttgtaagcagtgacttttgctgatc 365
Query: 181 tatggatctctgtcttcaccagaaaacaaccgtgaggagctgtgtgcaagccc------c 234
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 364 tatggatctctgtcttcaccagaaaacaactgtgaggagctgtgtgcaagccctcctgcc 305
Query: 235 ctctc--cctgcactctgtcttcatagctgccttgtagctttgtggcatgtgtgaacaac 292
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctctctccctgcactctgtcttcatagctgccttgtagctttgtggcatgtgtgaacaac 245
Query: 293 acagaaggctgtcaccatgtggccctggacacaggatcccagaa 336
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acagaaggctgtcaccatgtggccctggacacaggatcccagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 744
Length adjustment: 9
Effective length of query: 327
Effective length of database: 735
Effective search space: 240345
Effective search space used: 240345
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
