Query= MSMg01no547_o21.b1 MSMg01no547_o21.b1 CHROMAT_FILE:
MSMg01no547_o21.b1 PHD_FILE: MSMg01no547_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:42 2005
(589 letters)
>mm_chr4_31797756_31798744
Length = 989
Score = 760 bits (393), Expect = 0.0
Identities = 408/413 (98%), Gaps = 1/413 (0%)
Strand = Plus / Minus
Query: 1 aatggtaattatcacataatggcctttggctatgggtgaatggacagaagaaaagtatgt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aatggtaattatcatataatggcctttggctatgggtgaatggacagaagaaaagtatgt 354
Query: 61 aagaggagaggcagcaccaacttattgggaatataaatgtttgtgggcgacaataagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagaggagaggcagcaccaacttattgggaatataaatgtttgtgggcgacaataagaag 294
Query: 121 gaagtgctttcctatgtcttggtgatggactaacgatttaaatttgtaagtcatttaata 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 293 gaagtgctttcctatgtcttggtgatggactaacgatttaaatttataagtcatttaata 234
Query: 181 tgatcctgtatttacgtgagcatgtagtccatctgtggtggtttgaatgaaaatgactcc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tgatcctgtatttacttgagcatgtagtccatctgtggtggtttgaatgaaaatgactcc 174
Query: 241 cagaggcttagagggagtggcccttattagaaggtgtggcctttctggagtaggtgtaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cagaggcttagagggagtggcccttattagaaggtgtggcctttctggagtaggtgtaac 114
Query: 301 cttctgg-ctaggtgtggccttgttagaggaagtgggtcactgaggtgggctttacggat 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cttctggactaggtgtggccttgttagaggaagtgggtcactgaggtgggctttacggat 54
Query: 360 tcagatgctcaagccaggctcagtgtcattgtttcctcctgttgaactgaaga 412
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 53 tcagatgctcaagccaggctcagtgtcattgtttcctcccgttgaactgaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_o21.g1 MSMg01no547_o21.g1 CHROMAT_FILE:
MSMg01no547_o21.g1 PHD_FILE: MSMg01no547_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:42 2005
(637 letters)
>mm_chr4_31645365_31646400
Length = 1036
Score = 1208 bits (625), Expect = 0.0
Identities = 634/637 (99%), Gaps = 1/637 (0%)
Strand = Plus / Plus
Query: 1 tttctagaggaagttaggagatggctatggtattggcatatctattctccacaatatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctagaggaagttaggagatggctatggtattggcatatctattctccacaatatcca 260
Query: 61 aataaactagaattaaactgatctaacttccaataaattcttccccttcacattaccgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaactagaattaaactgatctaacttccaataaattcttccccttcacattaccgaa 320
Query: 121 tttaaaaatatcatatctcagaggctcagtgagtcgattgcttattgactttctggtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaaaatatcatatctcagaggctcagtgagtcgattgcttattgactttctggtggg 380
Query: 181 tccatatagtgtaatgagtctttatatctctattcttaaattgcttattggattcctaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatatagtgtaatgagtctttatatctctattcttaaattgcttattggattcctaag 440
Query: 241 attaaacaaagcagatgagaaaaattacagtgctggaaattaggaaagctggtcaaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaacaaagcagatgagaaaaattacagtgctggaaattaggaaagctggtcaaatga 500
Query: 301 gtacattattatcctatcaaaactacatttaaactttccagaataaatattaaaacacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacattattatcctatcaaaactacatttaaactttccagaataaatattaaaacacta 560
Query: 361 gaaaggctgcttttaaaagcttcttgtaacaagcagttctttataaattgattatctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaggctgcttttaaaagcttcttgtaacaagcagttctttataaattgattatctttt 620
Query: 421 tacaactttacttactataatatgaatttctgtcttcttataaaagtctaatggctttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaactttacttactataatatgaatttctgtcttcttataaaagtctaatggctttct 680
Query: 481 ctagattagataataaagtcagttctctatttgaaagaatttgtgccatggtatgagact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagattagataataaagtcagttctctatttgaaagaatttgtgccatggtatgagact 740
Query: 541 tataatgagtttcccccccccaaaggacctgaaaaataacacaaaaaatcagaaccttgg 600
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataatgagtg-ccccccaccaaaggacctgaaaaataacacaaaaaatcagaaccttgg 799
Query: 601 acataacatagtcagaatattattctaagaaaaactg 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 800 acataacatagtcagaatattattctaagaaaaactg 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
