Query= MSMg01no548_a14.b1 MSMg01no548_a14.b1 CHROMAT_FILE:
MSMg01no548_a14.b1 PHD_FILE: MSMg01no548_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:51 2005
(428 letters)
>mm_chr4_103466694_103467521
Length = 828
Score = 812 bits (420), Expect = 0.0
Identities = 423/424 (99%)
Strand = Plus / Minus
Query: 5 gaattcactcatcaatcaatattctcctggaatgtatgaaagattgggtctaagggcagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaattcactcatcaatcaatattctcctggaatgtatgaaagattgggtctaagggcagc 569
Query: 65 ttcatagtttagttttttgatgtattcttttttgttctcttaggaaaaaaaatcataaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttcatagtttagttttttgatgtattcttttttgttctcttaggaaaaaaaatcataaaa 509
Query: 125 tctcaaagtgtcattaaccatgtgtctcaaccatctcttctttcatagtctgcaaagact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctcaaagtgtcattaaccatgtgtctcaaccatctcttctttcatagtctgcaaagact 449
Query: 185 cctagttagacccatacttgactgatctcaggggacccacagactgaccctcatctgatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cctagttagacccatacttgactgatctcaggggacccacagactgaccctcatctgatc 389
Query: 245 cccaacctccttgtgcctcccttttcacatgtgtatctcacttcctctagacttccccac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cccaacctccttgtgcctcccttttcacatgtgtatctcacttcctctagacttccccac 329
Query: 305 aaaagccatgctattatccagctccacatctttgatagtatgccacagacaatatgagct 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaaagccatgctattacccagctccacatctttgatagtatgccacagacaatatgagct 269
Query: 365 atcctttcttatagtatctctgcctctcactcctcttcatacagtatcccatggcttctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atcctttcttatagtatctctgcctctcactcctcttcatacagtatcccatggcttctc 209
Query: 425 ctct 428
||||
Sbjct: 208 ctct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_a14.g1 MSMg01no548_a14.g1 CHROMAT_FILE:
MSMg01no548_a14.g1 PHD_FILE: MSMg01no548_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:51 2005
(585 letters)
>mm_chr4_103354699_103355683
Length = 985
Score = 1096 bits (567), Expect = 0.0
Identities = 580/585 (99%), Gaps = 2/585 (0%)
Strand = Plus / Plus
Query: 1 ttacacgtgaagtcattgtaagttttaattttttaattgttttatcttagtgtatgggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttacacgtgaagtcattgtaagttttaattttttaattgttttatcttagtgtatgggtg 262
Query: 61 ttttgactgaacgcatgtctgtgtaccacatgcatatgtggtgtcttgaggggtcagaag 120
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgt--actgaacgcatgtctgtgtaccacatgcatatgtggtgtcttgaggggtcagaag 320
Query: 121 agggtgtcagatacctgaaactggagttacatgcagttatgagacaccataagggtgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggtgtcagatacctgaaactggagttacatgcagttatgagacaccataagggtgctg 380
Query: 181 agaatcaaatcctggtcccttagaagagcagccagtactcttactcacggaaccatctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 agaatcaaatcctggtcccttagaagagcagccagtactcttactcacggagccatctct 440
Query: 241 ccagcccctggaaatggtcaggtttcaacattaatacagaacagaacttctctcaaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagcccctggaaatggtcaggtttcaacattaatacagaacagaacttctctcaaaaag 500
Query: 301 tcatgtactgagtctattttccagcaaattttcctataaaaggccatatgctggataatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatgtactgagtctattttccagcaaattttcctataaaaggccatatgctggataatt 560
Query: 361 taggtttaactattgtcataagttgaactagatactttaggttttgcaggacagacaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggtttaactattgtcataagttgaactagatactttaggttttgcaggacagacaaat 620
Query: 421 atggtttccatcacacatcctttgtgcttgttttgttttacaagctttaatttttaccag 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 atggtttccatcacacatcctttgtgcttgttttattttacaagctttaatttttaccag 680
Query: 481 ctttagtatttgaacaatattttgtgagctcttaatgcatatgtctaaccctcacacatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttagtatttgaacaatattttgtgagctcttaatgcatatgtctaaccctcacacatg 740
Query: 541 ggacacaggaatattgacattatgacatctatgtttctatactag 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggacacaggaatattgacattatgacatctatgtttctatactag 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
