BAC Information

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BAC

Clone NameMSMg01-548K24
Chromosome4 (Build37)
Map Location 118,460,474 - 118,460,999
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1
Downstream geneGA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548K24.T7 (MSMg01no548_k24.b1)MSMg01-548K24.TJ (MSMg01no548_k24.g1)
ACCAG612975AG612976
length722727
length of high quality
(start - end)		543 (39 - 581)619 (77 - 695)
definitionCHROMAT_FILE: MSMg01no548_k24.b1 PHD_FILE: MSMg01no548_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:40 2005CHROMAT_FILE: MSMg01no548_k24.g1 PHD_FILE: MSMg01no548_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGC
GGAATTCCAGAAGTAACCTCTTCCCTTCCAGGCTTGCTAGACTAAAATGT
GATGATGTGCTGCACCTGCCGCAAGTACTGGCCTATGGTCCATGACCTTG
AGTTTCCATCCCTGCCTTCTGTCTGAGTCTCTAATTCCCAACTATCCAGA
AGGAGAACCCAGGACTATAAACATCTTCCTTGTTAGATCGATAAGGTTTT
AGAATTCCTGTGAGCACAGGACTGTGTGGTGCATGAGTTTCATCTCAAGA
CTTGGGAGGCAGAAACAGCTGTGTTTTATAAGTTCAAAGCCAGCCTGCTC
TACTGAGCAAGCCAAGCCAGTTCAGCTAAGGATACGGAGAGAAACCACGT
TTTAAAAACAAACAAGGAAGCAAGCAAACAAACAAAAAAGAATTTCTGCG
AGGTATTCCATAAACACAGTGACTATTAAAAGTTAATTATATAAATGACA
GTAAAGTAAGTTGTATTGGAATAAAGACAGAATATCTGAGAATGGTGCTG
AGCTCTTTAACACCTGAGTAAATAGAATGCTTGAGTCTGGATTTTGATTT
ATAACATCAAAAAAAAAAGGGCAAAAAAAAACCTCCAAAACTCTTTACAT
CCTGATGTTCAACTACTTTTTCCTGTGGCCTGGTGTTCTAGAAATTGTCT
GGTGTGGTGCATTTGCTGGTTT

TGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGAGGCAGAGGCAGGCAGATCTC
TGAAGTCCAGGCCAGCCTAGTCAATAGAGTAAGTTCCAGGACATCCAGGG
CTACACAGAAAAGCCCTGTCTCAAAACAAACAAACAAACAAACAAACAAA
CAAACAAACAAACTATTGCAGGAGGAATATTTAAAGGTAAGAGGTACATG
GAGACTCTAATAAAGCAATGTCAGGAGAGACCGTGTTCTCCTGATATGGT
TTGAAAGAAAGGACAGCTGTGAGGGTGATGAGCAGGGACTGGTCAGGAGA
GGGGGCGGGGACAGGGAAGGTGAAGACTGGGGATGGCTTCAAGTCTCTTT
CATGCTTCTACTCCCATCAAAAGCAACTCCTGCCTTAAGCACTGTCTTGC
TCATCAGCACATGATAGTGGAGCTCTACTTCAGACTATTTAGAGTAGTGT
TTGAAAATTTCCTTAACATGTCTTTCCTTGATCATACATTTGTATATGGC
TATGTGCTTACATATTGTTTCAGAATTATACTTAATTTGTATTGTTGGAC
AATGCATTGAGTGTGTTTAACCTTAGGGAGCACAGCCAAGCACCACTAAA
GGGATCACTTTAATTTTCTCCCCTGTTGGATCTAGTTACCCCTGTTAATA
CTAGACATGTGTCACTGCAGCCAGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_k24.b1 MSMg01no548_k24.b1 CHROMAT_FILE:
MSMg01no548_k24.b1 PHD_FILE: MSMg01no548_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:40 2005
         (543 letters)



>mm_chr4_118460257_118461199
          Length = 943

 Score =  963 bits (498), Expect = 0.0
 Identities = 519/526 (98%)
 Strand = Plus / Plus

                                                                       
Query: 18  tccagaagtaacctcttcccttccaggcttgctagactaaaatgtgatgatgtgctgcac 77
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tccagaagtaaccgcttcccttccaggcttgctagactaaaatgtgatgatgtgctgcac 277

                                                                       
Query: 78  ctgccgcaagtactggcctatggtccatgaccttgagtttccatccctgccttctgtctg 137
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 278 ctgccgcaagtactggcctatggtccgtgaccttgagtttctatccctgccttctgtctg 337

                                                                       
Query: 138 agtctctaattcccaactatccagaaggagaacccaggactataaacatcttccttgtta 197
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 338 agtctccaattcccaactatccagaaggagaacccaggactataaacatcttccttgttg 397

                                                                       
Query: 198 gatcgataaggttttagaattcctgtgagcacaggactgtgtggtgcatgagtttcatct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gatcgataaggttttagaattcctgtgagcacaggactgtgtggtgcatgagtttcatct 457

                                                                       
Query: 258 caagacttgggaggcagaaacagctgtgttttataagttcaaagccagcctgctctactg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caagacttgggaggcagaaacagctgtgttttataagttcaaagccagcctgctctactg 517

                                                                       
Query: 318 agcaagccaagccagttcagctaaggatacggagagaaaccacgttttaaaaacaaacaa 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agcaagccaagccagttcagctaaggatacggagagaaaccacgttttaaaaacaaacaa 577

                                                                       
Query: 378 ggaagcaagcaaacaaacaaaaaagaatttctgcgaggtattccataaacacagtgacta 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ggaagcaagcaaacaaacaaaaaagaatttctgcgaggtattccataaacacagtgacta 637

                                                                       
Query: 438 ttaaaagttaattatataaatgacagtaaagtaagttgtattggaataaagacagaatat 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttaaaagttaattatataaatgacagtaaagtaagttgtattggaataaagacagaatat 697

                                                         
Query: 498 ctgagaatggtgctgagctctttaacacctgagtaaatagaatgct 543
           |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 698 ctgagaatggtgctaagctctgtaacacctgagtaaatagaatgct 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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