BAC Information

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BAC

Clone NameB6Ng01-001C15
Chromosome5 (Build37)
Map Location 29,675,341 - 29,816,410
singlet/doubletdoublet
Overlap geneLmbr1, EG620572, Gm1040, Hlxb9
Upstream genePrr8, Shh, LOC100039258, Rnf32, EG664949
Downstream geneLOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C15.bB6Ng01-001C15.g
ACCDH839562DH839563
length1,1371,011
definitionDH839562|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C15, 5' end.DH839563|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,675,341 - 29,676,498)(29,815,404 - 29,816,410)
sequence
gaattcacttatgagacagagggataagtcagcaagtcacaagtggccca
gacaatccagcatatatggtcatcattactataatgctgcttttcaacag
ctattggagcctccactccacactctgttactgtgatagacctacccaga
gagcagaaaaccacttctgctgcccacaaagagcccctcaactgacaaag
ggtctttaaaataaagccccaagttgaaaaagtatagacattgctagtac
aaccataaaacacaccctttcagaaatgtcatcttctaaaatagagtagt
aaaaatattatctttgcagactattgttccttttgtgattttggtagtaa
tacaacaaaaatattttcttgactatctggcatttgtgaccatctcctta
agggtatgcaaacttcactggaatgctaaatgtcacctatatctcaaaaa
gccataatctctaggtcacagtgtaaagtagcttcatggggtggtgacaa
atgcatcaaaaccaccttaaattacttcagcaaacctgccacacacttcc
aggtagcaaacaggacctcaaatgctggaccttgggtatttcaaatggat
aagcacttccttcttgaaattctcataccctttctccagcactccctcct
tcctaactacacactgaaatcagcactccctccttcctaactacacactg
aaatgttccgactatcatcttttttttttccattttttattaggtattta
gctcatttacatttccaatgctataccaaaagacccccgtacccacccac
ccccactcccctacccacccactccccccctttggccctggcgttcccct
gtaccggggcacacaaagtctgcgtgtcaatgggcctctctttccagtga
tggccgactaggccatcttttgatacatatgcagctagagtcagagctca
gggtactggttagttcataaaggttgtccacctataggttgaagatccct
ttagctccttgggtactttctctagcttctcaatgggagcctgtgatcca
tcattagtgacggtagcatcacttctggttgctagacccgctaatcccag
aaacagctacatctgggtctttcagaaatctggctag
gaattccaccttctcttaaaaatgtgactgtacctgaagcctgtggttgt
cctggactctgacaccctgtcacctgaggccatgatgaagtctggggtca
gggcagcctcagagaaccttatctgagtcctactagatggcatccagcta
gttctactgttgcaggggaccacgttagtggtcagtgctgttgccagaaa
ctgtggatgcccatgctctgtgctccagctgactgtgaagaacagaaagg
ctatgtttgctataatatgatcaatgactgaggatacacagttcagagag
acatagaaggcttctgtgacaacccctacctctacctctgcccccaaccc
ccaaaaagtaagagcatagactggaagccactgagcagaacttttaagaa
ctgtgttggggatactgaagtatagttcgccacaattgatgctctctgga
ggcggtgtgggaggggaaggactcagttctgtttagggagcaggccactg
agagtttcaccatgtcctttcccagtgagtgtatagataacacaaagtgg
acttgatctttttttttttttttttttggtggtggtggtggggcaggtca
caagaggagccatggaaagcacacatggaaatactgggaagggattctct
gtaaactcccagagaatcaacacacacacacacacacacacacacacaca
cacacacacacacacacacacccctactgtttgtggaaggagcactcagg
tgcctcatgaaagtggtctaaatctggaggggagacagcttacttccttt
ttatctggtttgccaagaagcttggaaaggcagattttgagtggcaaata
cctgagccaagttcagcagggcctgtgtgggggcagaattaaaaacagga
agtcttcctgcctgggccagttactcagggagaggggcaccttcctggat
cttggtagggcctctggggacacgggcctggagaaggagcctagcccttc
tccctaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_29675341_29676498
seq2: B6Ng01-001C15.b_43_1179

seq1  GAATTCACTTATGAGACAGAGGGATAAGTCAGCAAGTCACAAGTGGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATGAGACAGAGGGATAAGTCAGCAAGTCACAAGTGGCCCA  50

seq1  GACAATCCAGCATATATGGTCATCATTACTATAATGCTGCTTTTCAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCCAGCATATATGGTCATCATTACTATAATGCTGCTTTTCAACAG  100

seq1  CTATTGGAGCCTCCACTCCACACTCTGTTACTGTGATAGACCTACCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAGCCTCCACTCCACACTCTGTTACTGTGATAGACCTACCCAGA  150

seq1  GAGCAGAAAACCACTTCTGCTGCCCACAAAGAGCCCCTCAACTGACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAAACCACTTCTGCTGCCCACAAAGAGCCCCTCAACTGACAAAG  200

seq1  GGTCTTTAAAATAAAGCCCCAAGTTGAAAAAGTATAGACATTGCTAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTAAAATAAAGCCCCAAGTTGAAAAAGTATAGACATTGCTAGTAC  250

seq1  AACCATAAAACACACCCTTTCAGAAATGTCATCTTCTAAAATAGAGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAAACACACCCTTTCAGAAATGTCATCTTCTAAAATAGAGTAGT  300

seq1  AAAAATATTATCTTTGCAGACTATTGTTCCTTTTGTGATTTTGGTAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTATCTTTGCAGACTATTGTTCCTTTTGTGATTTTGGTAGTAA  350

seq1  TACAACAAAAATATTTTCTTGACTATCTGGCATTTGTGACCATCTCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAAAAATATTTTCTTGACTATCTGGCATTTGTGACCATCTCCTTA  400

seq1  AGGGTATGCAAACTTCACTGGAATGCTAAATGTCACCTATATCTCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATGCAAACTTCACTGGAATGCTAAATGTCACCTATATCTCAAAAA  450

seq1  GCCATAATCTCTAGGTCACAGTGTAAAGTAGCTTCATGGGGTGGTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAATCTCTAGGTCACAGTGTAAAGTAGCTTCATGGGGTGGTGACAA  500

seq1  ATGCATCAAAACCACCTTAAATTACTTCAGCAAACCTGCCACACACTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCAAAACCACCTTAAATTACTTCAGCAAACCTGCCACACACTTCC  550

seq1  AGGTAGCAAACAGGACCTCAAATGCTGGACCTTGGGTATTTCAAATGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCAAACAGGACCTCAAATGCTGGACCTTGGGTATTTCAAATGGAT  600

seq1  AAGCACTTCCTTCTTGAAATTCTCATACCCTTTCTCCAGCACTCCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTCCTTCTTGAAATTCTCATACCCTTTCTCCAGCACTCCCTCCT  650

seq1  TCCTAACTACACACTGAAATCAGCACTCCCTCCTTCCTAACTACACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTACACACTGAAATCAGCACTCCCTCCTTCCTAACTACACACTG  700

seq1  AAATGTTCCGACTATCATCTTTTTTTTTTCCATTTTTTATTAGGTATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCCGACTATCATCTTTTTTTTTTCCATTTTTTATTAGGTATTTA  750

seq1  GCTCATTTACATTTCCAATGCTATACCAAAAGACCCCCGTACCCACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTACATTTCCAATGCTATACCAAAAGACCCCCGTACCCACCCAC  800

seq1  CCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCT  850

seq1  GTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTG  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTACCGGGGCACACAAAGTCTGCGTGT-CAATGGGCCTCTCTTTCCAGTG  899

seq1  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTC-AGAGCT  948

seq1  CAGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGAAGAT  1000
      || |||||||||||||||||||| | |  |||||||||| ||||||||||
seq2  CA-GGGTACTGGTTAGTTCATAAAGGTTGTCCACCTATA-GGTTGAAGAT  996

seq1  CCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGT  1050
      ||||||||||||||||||||||||||||||| || || |||||| |||||
seq2  CCCTTTAGCTCCTTGGGTACTTTCTCTAGCTTCT-CAATGGGAG-CCTGT  1044

seq1  GATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCC  1100
      ||||||| |||||| |||| || ||||| ||||||  || ||||||| ||
seq2  GATCCAT-CATTAG-TGACGGT-AGCAT-CACTTC--TGGTTGCTAGACC  1088

seq1  CCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGTAAAAT  1150
      |  || || ||   | ||| |||||||||||||||| |||||||  ||||
seq2  C--GC-TAATC---CCAGAAACAGCTACATCTGGGT-CTTTCAG--AAAT  1129

seq1  CTTGCTAG  1158
      || |||||
seq2  CTGGCTAG  1137

seq1: chr5_29815404_29816410
seq2: B6Ng01-001C15.g_67_1077 (reverse)

seq1  CTTCCTAGGGTAGAAAGGCTATGCTTCCTTCT-CAGGCCTGTGT-CCCAG  48
      |||||||||| |||| ||||| || ||||||| |||||| |||| |||||
seq2  CTTCCTAGGG-AGAAGGGCTAGGC-TCCTTCTCCAGGCCCGTGTCCCCAG  48

seq1  AAGACCTACCATGGATCCAGGAAGGTGCCCCTCTCCCTGAGTAACTG--C  96
      | | |||||||  ||||||||||||||||||||||||||||||||||  |
seq2  AGGCCCTACCA-AGATCCAGGAAGGTGCCCCTCTCCCTGAGTAACTGGCC  97

seq1  CAGGCCAGGAGACTTCCTGTTTTTAATTCTGCCCCATCACAGGGCCTGCT  146
      |||||  | ||||||||||||||||||||||||||  |||||| ||||||
seq2  CAGGCAGGAAGACTTCCTGTTTTTAATTCTGCCCCCACACAGGCCCTGCT  147

seq1  G-ACTTGGCTCAGGTATTTGCCACTCAAAATCTGCACTTTCCAAGCTTCT  195
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAACTTGGCTCAGGTATTTGCCACTCAAAATCTGC-CTTTCCAAGCTTCT  196

seq1  TGGCATACCAGAT-AAAAGGAAGTAAGCTGTCT-CCCTCCAGATTTAGAC  243
      ||||| ||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TGGCAAACCAGATAAAAAGGAAGTAAGCTGTCTCCCCTCCAGATTTAGAC  246

seq1  CACTTTCCTGAGGCACCTGGGTGCTCCTTCCACAAACAGTAGGGGTGTGT  293
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  CACTTTCATGAGGCACCTGAGTGCTCCTTCCACAAACAGTAGGGGTGTGT  296

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAT  346

seq1  TCTCTGGGAGTTTACAGAGAATCCCTTCCCAGTATTTCCATGTGTGC-TT  392
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCTGGGAGTTTACAGAGAATCCCTTCCCAGTATTTCCATGTGTGCTTT  396

seq1  CCATGGCTCCTCTTGTGACCTGCCCCACCACCACCACCAAAAAAAAAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTCCTCTTGTGACCTGCCCCACCACCACCACCAAAAAAAAAAAA  446

seq1  AAAAAAAGATCAAGTCCACTTTGTGTTATCTATACACTCACTGGGAAAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATCAAGTCCACTTTGTGTTATCTATACACTCACTGGGAAAGG  496

seq1  ACATGGTGAAACTCTCAGTGGCCTGCTCCCTAAACAGAACTGAGTCCTTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGAAACTCTCAGTGGCCTGCTCCCTAAACAGAACTGAGTCCTTC  546

seq1  CCCTCCCACACCGCCTCCAGAGAGCATCAATTGTGGCGAACTATACTTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCACACCGCCTCCAGAGAGCATCAATTGTGGCGAACTATACTTCA  596

seq1  GTATCCCCAACACAGTTCTTAAAAGTTCTGCTCAGTGGCTTCCAGTCTAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCCAACACAGTTCTTAAAAGTTCTGCTCAGTGGCTTCCAGTCTAT  646

seq1  GCTCTTACTTTTTGGGGGTTGGGGGCAGAGGTAGAGGTAGGGGTTGTCAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACTTTTTGGGGGTTGGGGGCAGAGGTAGAGGTAGGGGTTGTCAC  696

seq1  AGAAGCCTTCTATGTCTCTCTGAACTGTGTATCCTCAGTCATTGATCATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTTCTATGTCTCTCTGAACTGTGTATCCTCAGTCATTGATCATA  746

seq1  TTATAGCAAACATAGCCTTTCTGTTCTTCACAGTCAGCTGGAGCACAGAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCAAACATAGCCTTTCTGTTCTTCACAGTCAGCTGGAGCACAGAG  796

seq1  CATGGGCATCCACAGTTTCTGGCAACAGCACTGACCACTAACGTGGTCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCATCCACAGTTTCTGGCAACAGCACTGACCACTAACGTGGTCCC  846

seq1  CTGCAACAGTAGAACTAGCTGGATGCCATCTAGTAGGACTCAGATAAGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACAGTAGAACTAGCTGGATGCCATCTAGTAGGACTCAGATAAGGT  896

seq1  TCTCTGAGGCTGCCCTGACCCCAGACTTCATCATGGCCTCAGGTGACAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGGCTGCCCTGACCCCAGACTTCATCATGGCCTCAGGTGACAGG  946

seq1  GTGTCAGAGTCCAGGACAACCACAGGCTTCAGGTACAGTCACATTTTTAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGAGTCCAGGACAACCACAGGCTTCAGGTACAGTCACATTTTTAA  996

seq1  GAGAAGGTGGAATTC  1007
      |||||||||||||||
seq2  GAGAAGGTGGAATTC  1011