BAC Information

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BAC

Clone NameB6Ng01-001F06
Chromosome5 (Build37)
Map Location 71,537,811 - 71,679,957
singlet/doubletdoublet
Overlap geneLOC635092
Upstream geneGabrg1, Gabra2
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F06.bB6Ng01-001F06.g
ACCDH839684DH839685
length1,1831,116
definitionDH839684|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F06, 5' end.DH839685|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,678,762 - 71,679,957)(71,537,811 - 71,538,736)
sequence
gaattcatagctgcttcaacaaaaattatgcagaatgaaaacatgaattc
ctattagggttgggcaggatgaaacgaggtctgaaaacgagaaagggact
gaacactttggtccacccctgataatggcttgtgtagccctaggcaactt
atttcatttcagagagcctttacttttgtcatggtgatggtgatgcacac
tacttctcaagtgtgttgtgcagattaattatttaatgtctgccaaccct
ttgaagatgacgaataaaggctcagtgctaagttttgtacatggactagg
atatatcaggcaatttcaatgtatttcaccagtaaatgttggtggggaac
tagggaggtaaaagtagctaagagtgtgaaagaaacaaagatgaaacaac
tatttctcaatgattctgaattttttccctgcctgctactttttgatgaa
atgtgtctgacagctaagcatagaagcaatgtatttaaaattatttccag
aaaataccttcagggccaaagcaatgtcaagttgatttctctcataccta
gtttaactgcacaacgaattcatgttctaaataataatatctgtaagaca
acaaagacttcctaccaaagaaaaactgtgtgtagaattttacttcacat
taattgttggttaaatgcaaattatttttgcagagttttgaagtacgaaa
caaaactaattagggaagactttcaaaagggtagaaacaaaaagaatatt
ctagcaaaattataaaagaaaaatcacaatcattgagtctatttctcttt
tacctaaacatagcatatacaaggaagtcacacgacttggactgagcaag
aaaaatcaatttggataatgtcaatatctcatgttccctatgaaccccta
aatacataacaataagataaatacttgaatatatactgtattttgttccc
attctcatctaacactgatgaattaattttaagtcatttaatgtagtctt
agatataaacatataatgatagattattcagatatagacttattatccgt
gatatcacccaaaaataattcacatgaggaaagacttattttggacatga
cttcagaatgtttttctcccgtgctcctgatcagattgggtctgtggtta
agtgaacagtgaagatctttttctctctcacgg
gaattctgtactgaaactatctgttcctacacactttttgattggaaggt
ttttgataactgcttctatttcctcggggggtatggggctacaacataac
ttctttacctggggctcaggaagcattaaggatgtggtggaaaaattgta
agagaggatcaagaagtctacagtgaaatcatgtctcctacaaatgactg
gaaagccacactcatgatttctagcaaatatatctacctaaagaagacct
acagaatgataatatcaatagacatgctaacattgaaaggggaaagccca
cagggacttaccccagacaaagacccacaagtaactaagaactacttagg
gaggtacaattagcctctctcagggataactgcaaattgcttacccaatg
caaagtcatcagtcctgatatcatatgtacaaagccacactaaacaggct
tagcaggttgtatttatgtattatgcatgtatatttatctctattatcta
tatccctatctgtgtctctatatacacatctatatatatgtaacaataac
aataaaaagagatcatcactttgagagggagtcgagagaaagacttggaa
gaaattgaagggaaggcatatggaatgggttgaaggatagctatgggaga
gggtaaataatgtaatatatttaattaaaatgttaataaaatttaaatat
aaagatattgatatacattagttctttgagaaataagttcaacctgtttt
aataacattcataccttatcttctcccagatttaaccacctttccataat
tacccattttctgtttcctcttaaaaacactaagtccagtttgtgctttc
caaatattcttggatgtgttacccttccacaggaatgtggtcaatagtac
actcataggtctctcatgaaatcactgctcctgttagctgagactgtggg
cccatgaatttctcataaagtgagagaaatacaaaaccacagttttacac
atatgtgtgaggttagtgtaaatcattatatctatgtcatatacactata
tcatatcatactaatagataagtagttatgcatgatatatcatacataaa
tgttaagtaaccacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71678762_71679957
seq2: B6Ng01-001F06.b_46_1228 (reverse)

seq1  CCGTGAAGTAGAAAAAGATTCTTCACTGTTTTCTACTTACCACAGACCCA  50
      ||||||   ||||||||| |||||||||||  ||  | ||||||||||||
seq2  CCGTGAGAGAGAAAAAGA-TCTTCACTGTTCACT--TAACCACAGACCCA  47

seq1  TACTGATTCCAAGGAGCCACGGAG-AAAACATTCTGAAGTCATGTCCCAA  99
        |||||    ||||||   |||| |||||||||||||||||||| ||||
seq2  ATCTGAT---CAGGAGCACGGGAGAAAAACATTCTGAAGTCATGT-CCAA  93

seq1  AATAAGTCTTTCCTCATGTGAATTTATTTTTGGGTGATTATCACGGATAA  149
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  AATAAGTCTTTCCTCATGTGAA-TTATTTTTGGGTGA-TATCACGGATAA  141

seq1  TAAGTCTAATATCTGAATTAATTCTAATTCATTATATGTTTATATCTAAG  199
      ||||||| ||||||||||  | ||||  ||||||||||||||||||||||
seq2  TAAGTCT-ATATCTGAAT--AATCTA--TCATTATATGTTTATATCTAAG  186

seq1  ACTACATTAAATGACTTAAAATTAATTCATCAGTGTTAGATGAGAATGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATTAAATGACTTAAAATTAATTCATCAGTGTTAGATGAGAATGGG  236

seq1  AACAAAATACAGTATATATTCAAGTATTTATCTTATTGTTATGTATTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATACAGTATATATTCAAGTATTTATCTTATTGTTATGTATTTAG  286

seq1  GGGTTCATAGGGAACATGAGATATTGACATTATCCAAATTGATTTTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCATAGGGAACATGAGATATTGACATTATCCAAATTGATTTTTCTT  336

seq1  GCTCAGTCCAAGTCGTGTGACTTCCTTGTATATGCTATGTTTAGGTAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCCAAGTCGTGTGACTTCCTTGTATATGCTATGTTTAGGTAAAA  386

seq1  GAGAAATAGACTCAATGATTGTGATTTTTCTTTTATAATTTTGCTAGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAGACTCAATGATTGTGATTTTTCTTTTATAATTTTGCTAGAAT  436

seq1  ATTCTTTTTGTTTCTACCCTTTTGAAAGTCTTCCCTAATTAGTTTTGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTGTTTCTACCCTTTTGAAAGTCTTCCCTAATTAGTTTTGTTT  486

seq1  CGTACTTCAAAACTCTGCAAAAATAATTTGCATTTAACCAACAATTAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTTCAAAACTCTGCAAAAATAATTTGCATTTAACCAACAATTAATG  536

seq1  TGAAGTAAAATTCTACACACAGTTTTTCTTTGGTAGGAAGTCTTTGTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAAAATTCTACACACAGTTTTTCTTTGGTAGGAAGTCTTTGTTGT  586

seq1  CTTACAGATATTATTATTTAGAACATGAATTCGTTGTGCAGTTAAACTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGATATTATTATTTAGAACATGAATTCGTTGTGCAGTTAAACTAG  636

seq1  GTATGAGAGAAATCAACTTGACATTGCTTTGGCCCTGAAGGTATTTTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGAGAAATCAACTTGACATTGCTTTGGCCCTGAAGGTATTTTCTG  686

seq1  GAAATAATTTTAAATACATTGCTTCTATGCTTAGCTGTCAGACACATTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTTTAAATACATTGCTTCTATGCTTAGCTGTCAGACACATTTC  736

seq1  ATCAAAAAGTAGCAGGCAGGGAAAAAATTCAGAATCATTGAGAAATAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAGTAGCAGGCAGGGAAAAAATTCAGAATCATTGAGAAATAGTT  786

seq1  GTTTCATCTTTGTTTCTTTCACACTCTTAGCTACTTTTACCTCCCTAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCTTTGTTTCTTTCACACTCTTAGCTACTTTTACCTCCCTAGTT  836

seq1  CCCCACCAACATTTACTGGTGAAATACATTGAAATTGCCTGATATATCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCAACATTTACTGGTGAAATACATTGAAATTGCCTGATATATCCT  886

seq1  AGTCCATGTACAAAACTTAGCACTGAGCCTTTATTCGTCATCTTCAAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGTACAAAACTTAGCACTGAGCCTTTATTCGTCATCTTCAAAGG  936

seq1  GTTGGCAGACATTAAATAATTAATCTGCACAACACACTTGAGAAGTAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGACATTAAATAATTAATCTGCACAACACACTTGAGAAGTAGTG  986

seq1  TGCATCACCATCACCATGACAAAAGTAAAGGCTCTCTGAAATGAAATAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACCATCACCATGACAAAAGTAAAGGCTCTCTGAAATGAAATAAG  1036

seq1  TTGCCTAGGGCTACACAAGCCATTATCAGGGGTGGACCAAAGTGTTCAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAGGGCTACACAAGCCATTATCAGGGGTGGACCAAAGTGTTCAGT  1086

seq1  CCCTTTCTCGTTTTCAGACCTCGTTTCATCCTGCCCAACCCTAATAGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCGTTTTCAGACCTCGTTTCATCCTGCCCAACCCTAATAGGAA  1136

seq1  TTCATGTTTTCATTCTGCATAATTTTTGTTGAAGCAGCTATGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTTTCATTCTGCATAATTTTTGTTGAAGCAGCTATGAATTC  1183

seq1: chr5_71537811_71538736
seq2: B6Ng01-001F06.g_275_1185

seq1  CCACACTCATGATTTCTAGCAAATATATCTACCTAAAGAAGACCTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCATGATTTCTAGCAAATATATCTACCTAAAGAAGACCTACAGA  50

seq1  ATGATAATATCAATAGACATGCTAACATTGAAAGGGGAAAGCCCACAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATATCAATAGACATGCTAACATTGAAAGGGGAAAGCCCACAGGG  100

seq1  ACTTACCCCAGACAAAGACCCACAAGTAACTAAGAACTACTTAGGGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCCCAGACAAAGACCCACAAGTAACTAAGAACTACTTAGGGAGGT  150

seq1  ACAATTAGCCTCTCTCAGGGATAACTGCAAATTGCTTACCCAATGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAGCCTCTCTCAGGGATAACTGCAAATTGCTTACCCAATGCAAAG  200

seq1  TCATCAGTCCTGATATCATATGTACAAAGCCACACTAAACAGGCTTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTCCTGATATCATATGTACAAAGCCACACTAAACAGGCTTAGCA  250

seq1  GGTTGTATTTATGTATTATGCATGTATATTTATCTCTATTATCTATATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTATTTATGTATTATGCATGTATATTTATCTCTATTATCTATATCC  300

seq1  CTATCTGTGTCTCTATATACACATCTATATATATGTAACAATAACAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGTCTCTATATACACATCTATATATATGTAACAATAACAATAA  350

seq1  AAAGAGATCATCACTTTGAGAGGGAGTCGAGAGAAAGACTTGGAAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATCATCACTTTGAGAGGGAGTCGAGAGAAAGACTTGGAAGAAAT  400

seq1  TGAAGGGAAGGCATATGGAATGGGTTGAAGGATAGCTATGGGAGAGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAGGCATATGGAATGGGTTGAAGGATAGCTATGGGAGAGGGTA  450

seq1  AATAATGTAATATATTTAATTAAAATGTTAATAAAATTTAAATATAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTAATATATTTAATTAAAATGTTAATAAAATTTAAATATAAAGA  500

seq1  TATTGATATACATTAGTTCTTTGAGAAATAAGTTCAACCTGTTTTAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATATACATTAGTTCTTTGAGAAATAAGTTCAACCTGTTTTAATAA  550

seq1  CATTCATACCTTATCTTCTCCCAGATTTAACCACCTTTCCATAATTACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATACCTTATCTTCTCCCAGATTTAACCACCTTTCCATAATTACCC  600

seq1  ATTTTCTGTTTCCTCTTAAAAACACTAAGTCCAGTTTGTGCTTCCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTTTCTGTTTCCTCTTAAAAACACTAAGTCCAGTTTGTGCTTTCCAAAT  650

seq1  ATTCTTGGATGTGTTACCCTTCCACAGGAATGTGGTCAAATAGTACACTC  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCTTGGATGTGTTACCCTTCCACAGGAATGTGGTC-AATAGTACACTC  699

seq1  ATAGTTCTCTCATGAAATCACTGCTCCTGTTAAGCTGAGACTGTGGGCCC  750
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAGGTCTCTCATGAAATCACTGCTCCTGTT-AGCTGAGACTGTGGGCCC  748

seq1  ATGAATTTCTCATAAAGTGAGAGAAATAACAAAAACACAGTTTTACACAT  800
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  ATGAATTTCTCATAAAGTGAGAGAAAT-ACAAAACCACAGTTTTACACAT  797

seq1  ATGTGTGAAGGTTAGTGTAAATCATTATATCTATGTCATATACACCTATA  850
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  ATGTGTG-AGGTTAGTGTAAATCATTATATCTATGTCATATACA-CTATA  845

seq1  TCCATATCTATACCTATATAGATAAGTAGTTTATGCATTGTATATAATTT  900
      | |||||| ||| ||| |||||||||||| ||||||||  ||||     |
seq2  T-CATATC-ATA-CTA-ATAGATAAGTAG-TTATGCATGATATA-----T  885

seq1  CATACATAAATGTTATAGTAA-CACAA  926
      ||||||||||||||| ||||| |||||
seq2  CATACATAAATGTTA-AGTAACCACAA  911