BAC Information

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BAC

Clone NameB6Ng01-001F09
Chromosome5 (Build37)3 (Build37)
Map Location 18,084,511 - 18,084,575112,731,006 - 112,732,152
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F09.bB6Ng01-001F09.g
ACCDH839688DH839689
length9291,144
definitionDH839688|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F09, 5' end.DH839689|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(112,731,006 - 112,732,152)
sequence
gaattcaaggaggtgactccaggaagtcaaataaccccattaaaattggg
gttcagagctaaacaaagaattctcacctgaggaataccgaatggctgag
aagcacctgaaaaaatgttcagcatactaatcttcagggaaatgcaaatc
aaagcaaagctgagattccacctcacaccagtcagaatgactaagatcaa
aaattcaggtgaccgcagatgctggcaaggatgtcgagaaagcagaacaa
tcctccattgttggtgggattgcaagcttgtacaaccactgtggaaatca
gtctggtgtttcctcagaattttggacatagtactaccggaggatcccgc
aatacctctcctgggcatatatccagaagatgtcccaaccggtaagaagg
acacatgctccactatattcatagcagccttatttataatagccagaagc
tgaaaagaatccagatgcccctcaacagaggaatggatacagaaaatgtg
gtacatttacagaatggagtactactcagctattaaaaagaataaattta
tgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgag
gtaacccaataccaaaagaactcacatgatatgtacatactgataagtgt
atattagcccagaaatttaaaatacccaagataccagatacaatttgcaa
aacacatgaaactcaagaagaacaaagaccaaagtgttgacaccttgccc
ctttttagaattgggaacaaacaacccatggaaggagttactgacacaaa
gtttggagctgagacaaaaggatggaccatctttagactgccatacctgt
ggatctatcccaataatctacttccaaatgctgacaactttgcatacact
agcaagattttgctgaaaggacccagata
gaattccaagttctttaaaagttaatgttcaacaactgcaaaaacaaagt
aacaacgtaatttaagtggatctatggaaaagcatctaataatcttttga
gattaccaaatagtaaaagaagataaaaatacccaaaagtgatggtttgt
attaagtacagaagctagctgtatttgcatgaacacttagcagcaaactt
aaagaaacacgtaaaggaaacaaatgcccaacgctccccatgcacccatt
ataatatggtacagaactcacacagttataacccctgaagttacatagac
atgatcaatgtaatgtgatagtgttcaaccatatcagagaagtatctctg
aattattctgctaacaatgaaggaacagtaaagattattttctcaggatt
ttattgggtttaagaataaagtgtagttccttaggtccacctcaaagtct
agagaattttattcatacaatcacctggcactgactgaatagtatacttt
actaaatctgtcctctaataattttaggacaccaaacattgtggttttgt
atccaggtcttgtttcatgtcatctcaaaatcatcttcctttcattactt
ctactatagtacttggtattaaattcttaagaaataaactgacccatgcc
tacgtatcttatataactgcctaccaataggaaacaagtcaattaaagaa
tgactatacaattgtgtgattgcatcttccttaatataacttaaaaatca
ttttccagtagagctcaaggtctttcattcatggaaaagtcttatctttc
cgagatgatattagaagcacatcatattcatacatttttccagaaattat
cttatcatatttacagtaaagtataagattttctaaaataaacttgtatt
atttgctgtgtaaaactaaatacttccttcagctattctcatttaaagct
ttcactgttgtggatatgtctctggatgtaaataagaacaaataatgtgt
aactatactgatattattcattactacactgctatatctagtctgagatg
gactattatttctgtgatttgacatacaaagccatatttatgcctttcta
ggaatgtggatatggacaggattttcggatggaaataatgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-001F09.b_434_498 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      ||||||||| |||||
seq2  CTTCTTACCGGTTGG  65

seq1: chr3_112731006_112732152
seq2: B6Ng01-001F09.g_67_1210 (reverse)

seq1  GACACATAAATTCCATCTTAAAAATTCTGTTCATATTCACA-TCCTAGTA  49
      ||||||| | |||||||   ||||| |||| ||||| |||| |||||| |
seq2  GACACATTATTTCCATC-CGAAAATCCTGTCCATATCCACATTCCTAGAA  49

seq1  GGGCAT-AATATGGCTTTGTTATGTCAAATCACAGAAATAATAGTCCATC  98
       ||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGCATAAATATGGCTTTG-TATGTCAAATCACAGAAATAATAGTCCATC  98

seq1  TTCAGACTAAGATATAGCAGTGGTAGTAATGAAT-ATATCAGTATAGTTA  147
       ||||||| |||||||||||| |||||||||||| |||||||||||||||
seq2  -TCAGACT-AGATATAGCAGT-GTAGTAATGAATAATATCAGTATAGTTA  145

seq1  CAACATTATTTGTTCTTATTTACATCCAGAGACATATCCACAACAGTTGA  197
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  C-ACATTATTTGTTCTTATTTACATCCAGAGACATATCCACAACAG-TGA  193

seq1  AAGCTTTAAATGAGAATAGCTGAAGGAAGTATTTAGTTTTACACAGCAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTAAATGAGAATAGCTGAAGGAAGTATTTAGTTTTACACAGCAAA  243

seq1  TAATACAAGTTTATTTTAGAAAATCTTATACTTTACTGTAAATATGATAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAGTTTATTTTAGAAAATCTTATACTTTACTGTAAATATGATAA  293

seq1  GATAATTTCTGG-AAAATGTATGAATATGATGTGCTTCTAATATCATCTC  346
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATAATTTCTGGAAAAATGTATGAATATGATGTGCTTCTAATATCATCTC  343

seq1  GGAAAGATAAGACTTTTCCATGAATGAAAGACCTTGAGCTCTACTGGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATAAGACTTTTCCATGAATGAAAGACCTTGAGCTCTACTGGAAA  393

seq1  ATGATTTTTAAGTTATATTAAGGAAGATGCAATCACACAATTGTATAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTAAGTTATATTAAGGAAGATGCAATCACACAATTGTATAGTC  443

seq1  ATTCTTTAATTGACTTGTTTCCTATTGGTAGGCAGTTATATAAGATACGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAATTGACTTGTTTCCTATTGGTAGGCAGTTATATAAGATACGT  493

seq1  AGGCATGGGTCAGTTTATTTCTTAAGAATTTAATACCAAGTACTATAGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGGTCAGTTTATTTCTTAAGAATTTAATACCAAGTACTATAGTA  543

seq1  GAAGTAATGAAAGGAAGATGATTTTGAGATGACATGAAACAAGACCTGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATGAAAGGAAGATGATTTTGAGATGACATGAAACAAGACCTGGA  593

seq1  TACAAAACCACAATGTTTGGTGTCCTAAAATTATTAGAGGACAGATTTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACCACAATGTTTGGTGTCCTAAAATTATTAGAGGACAGATTTAG  643

seq1  TAAAGTATACTATTCAGTCAGTGCCAGGTGATTGTATGAATAAAATTCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATACTATTCAGTCAGTGCCAGGTGATTGTATGAATAAAATTCTC  693

seq1  TAGACTTTGAGGTGGACCTAAGGAACTACACTTTATTCTTAAACCCAATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTGAGGTGGACCTAAGGAACTACACTTTATTCTTAAACCCAATA  743

seq1  AAATCCTGAGAAAATAATCTTTACTGTTCCTTCATTGTTAGCAGAATAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGAGAAAATAATCTTTACTGTTCCTTCATTGTTAGCAGAATAAT  793

seq1  TCAGAGATACTTCTCTGATATGGTTGAACACTATCACATTACATTGATCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATACTTCTCTGATATGGTTGAACACTATCACATTACATTGATCA  843

seq1  TGTCTATGTAACTTCAGGGGTTATAACTGTGTGAGTTCTGTACCATATTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGTAACTTCAGGGGTTATAACTGTGTGAGTTCTGTACCATATTA  893

seq1  TAATGGGTGCATGGGGAGCGTTGGGCATTTGTTTCCTTTACGTGTTTCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGTGCATGGGGAGCGTTGGGCATTTGTTTCCTTTACGTGTTTCTT  943

seq1  TAAGTTTGCTGCTAAGTGTTCATGCAAATACAGCTAGCTTCTGTACTTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGCTGCTAAGTGTTCATGCAAATACAGCTAGCTTCTGTACTTAA  993

seq1  TACAAACCATCACTTTTGGGTATTTTTATCTTCTTTTACTATTTGGTAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACCATCACTTTTGGGTATTTTTATCTTCTTTTACTATTTGGTAAT  1043

seq1  CTCAAAAGATTATTAGATGCTTTTCCATAGATCCACTTAAATTACGTTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGATTATTAGATGCTTTTCCATAGATCCACTTAAATTACGTTGT  1093

seq1  TACTTTGTTTTTGCAGTTGTTGAACATTAACTTTTAAAGAACTTGGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTTTTGCAGTTGTTGAACATTAACTTTTAAAGAACTTGGAATT  1143

seq1  C  1147
      |
seq2  C  1144