BAC Information

Click to search

BAC

Clone NameB6Ng01-001I08
Chromosome5 (Build37)
Map Location 29,927,045 - 30,080,450
singlet/doubletdoublet
Overlap geneUbe3c, LOC100039363, EG332993, Dnajb6
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355
Downstream geneEG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001I08.bB6Ng01-001I08.g
ACCDH839817DH839818
length1,1601,108
definitionDH839817|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I08, 5' end.DH839818|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,079,252 - 30,080,450)(29,927,045 - 29,928,167)
sequence
gaattcaccagagagcaaaaacaaattaactaggatagaataatacacat
ggaagagggaaataatgccctaaaatctttattgctgaagtcaccaatca
aaaaactctgaaaaggttggcaggaaatgcctgacgactccactagtcca
aaaagacaagagttcagtaacacaacaaaatgttaaatgcaaacatttaa
catggtaccatcagccctcactaggccagaccaaaggacggaccaggcag
gtacttaccaaagaagtcaaatgaaaatgggtcccttccaccaaaaaatt
ccctgaagacatcatctgggttccggaatgtgaagccaaactcaaatgga
ctgtcaaaatgaattccacctatacaagcacaataaagtgtttagcttat
gaattctgatatttcaaagcaactgtttattcataaattactgtatattt
catggtctgagagagaacatattccacacatctgggattctaaaagccca
agagtcttatttgcctagcatttgaccacatgagtgctcagatctctaag
gcctatgaatttttcagtctctgtctgcaatgatgctttaacataatcaa
atcactgtccactgtttttgtcatgaattataaaggcttatgaaagccaa
gaatattgactccaccaatttccccataggtacaatattagatcccagca
agccttttaagatgaggcagctcatctcctgagcaccatttccacacaat
aggcaatgtcactgctaaaagcatagtaaggttatcttatcagagcagac
atctccacttacttctcctaacctgacaaatgtgtagttggttctccccc
ctcccttttattgaagcagtcctcactatgcaaagcaggctggccttaaa
ctcaaagttcctgtcaaattctcttttggttcagttttatatattttaat
tattttaatcctttaagagcagacttactgcagagatcacatcatataga
gtgatctaaacccacaggcagcttcaactcacagcactacactactagcc
ctaggtgctagattcagcatgtaccacatgctgatcacagcagttttttt
aatgatgttaatgtttatttcctctctttaccaactcacactttcagcat
cctgttgact
gaattcaatttctgggttcaacaaggcagaagaacagactctttctacat
tgttccctagacctcccaaaataaatgtgcttaaattttttaagtatttc
tctattgtaataaagacaatttccactttcttttaggatattatagatct
ctctacttgttgattaatagcaagcttccatcaagtattgaatattctga
tttatctcgagttcctatagcaaaaattttgctggagaatgtcctaaaac
cattgcactttacgtatagctcctgtcctgaagcctcaaggtgggtgaac
aattactgggcagtcagatgttttattagtatgtcatggctcacagtatg
tagtatactttcctctgtcttacctgtgcctgacatacattttaattctg
atgatctggttatttatttcctgttctttagaacctgtcatggggaaaaa
atgatcttaatagagaagatataaatcaaattctagcctctactggatga
ttcgctttattgatttagaatataggtgatttacttagaaagacatatgg
ggaaatgatttttttacctgtgattgatttgatgggtagaatatgttgat
tttcttgaaatcccttttcttttccaggcatcaagttttctcagccttca
cagaggagtttctgggagcaccttttaccgatcaaatttttcatttcgtc
attccggcctttgcagatgcacaaactgtgttcccttatgagccctttct
caatgcattgttgttacttgagagtcaaagttcaaaacggtgtagtggag
tgccatggctcttctattttgttttaactgttggcgagaattatttaggt
atgaaatataagatgtatctctcctaactcctataaaggcagctgagcag
atgagtcatttcagcagatttcacaaattggtagaactcttgaaatcagg
tgtttttctagttatatgacacatttctgtgacatgatgcagatgtgggt
tatccctcagccctagaagtttgctgctgagctgctggagagagggaaca
catacgaaagtttaggcgggtctcatgaactgcctgcactttagacttga
tgcccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30079252_30080450
seq2: B6Ng01-001I08.b_46_1205 (reverse)

seq1  AGTCAACAGGGATTTGCCTTGAAAGTGTTGAGTTTGTGTAAATGAGGAGA  50
      ||||||||||    |||  |||||||| |||||| ||   || |||  ||
seq2  AGTCAACAGG---ATGC--TGAAAGTG-TGAGTTGGT---AAAGAGAGGA  41

seq1  AATAAACATTTAAACATTTAATAAAAATAAACCTGCTTGTTGATCAGGCA  100
      ||||||||||  ||||  | || |||  ||| |||||   |||||| |||
seq2  AATAAACATT--AACA--TCATTAAA--AAAACTGCT--GTGATCA-GCA  82

seq1  TGGTGGTACATGCTGAAAATCCTAGCACCTTAGGGGCTAAGGTAGTGTAG  150
      | |||||||||||||||    |||||||||   ||||||  |||||||||
seq2  T-GTGGTACATGCTGAA---TCTAGCACCT--AGGGCTA--GTAGTGTAG  124

seq1  TGCCTGTGAGTTGAAAGCCTGCCTGGTGGGTTTTAGATCACTCTATATGA  200
      || ||||||||||||   |||||| ||||| |||||||||||||||||||
seq2  TG-CTGTGAGTTGAA--GCTGCCT-GTGGG-TTTAGATCACTCTATATGA  169

seq1  TTGTGATTCTTCTGCAGTAAGTCTGCCTCCTTAAAGGATTAAAAATAATT  250
       ||||||   ||||||||||||||||   ||||||||||| |||||||||
seq2  -TGTGAT--CTCTGCAGTAAGTCTGC--TCTTAAAGGATT-AAAATAATT  213

seq1  AAAATATATAAAAACTGAACCAAAAGAGAATTTGACAGGAACTTTGAGTT  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAT-AAAACTGAACCAAAAGAGAATTTGACAGGAACTTTGAGTT  262

seq1  TAAGGCCAGCCTGCTTTGCATAGTGAGGACCTGCTTCAATAAAAGGGAGG  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAGGCCAGCCTGCTTTGCATAGTGAGGA-CTGCTTCAATAAAAGGGAGG  311

seq1  GGGGAGAACCAACTACACATTTGTCAGGTTAGGAGAAGTAAGTGGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAACCAACTACACATTTGTCAGGTTAGGAGAAGTAAGTGGAGATG  361

seq1  TCTGCTCTGATAAGATAACCTTACTATGCTTTTAGCAGTGACATTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTGATAAGATAACCTTACTATGCTTTTAGCAGTGACATTGCCTA  411

seq1  TTGTGTGGAAATGGTGCTCAGGAGATGAGCTGCCTCATCTTAAAAGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGAAATGGTGCTCAGGAGATGAGCTGCCTCATCTTAAAAGGCTT  461

seq1  GCTGGGATCTAATATTGTACCTATGGGGAAATTGGTGGAGTCAATATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATCTAATATTGTACCTATGGGGAAATTGGTGGAGTCAATATTCT  511

seq1  TGGCTTTCATAAGCCTTTATAATTCATGACAAAAACAGTGGACAGTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCATAAGCCTTTATAATTCATGACAAAAACAGTGGACAGTGATT  561

seq1  TGATTATGTTAAAGCATCATTGCAGACAGAGACTGAAAAATTCATAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGTTAAAGCATCATTGCAGACAGAGACTGAAAAATTCATAGGCC  611

seq1  TTAGAGATCTGAGCACTCATGTGGTCAAATGCTAGGCAAATAAGACTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATCTGAGCACTCATGTGGTCAAATGCTAGGCAAATAAGACTCTT  661

seq1  GGGCTTTTAGAATCCCAGATGTGTGGAATATGTTCTCTCTCAGACCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTAGAATCCCAGATGTGTGGAATATGTTCTCTCTCAGACCATGA  711

seq1  AATATACAGTAATTTATGAATAAACAGTTGCTTTGAAATATCAGAATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAGTAATTTATGAATAAACAGTTGCTTTGAAATATCAGAATTCA  761

seq1  TAAGCTAAACACTTTATTGTGCTTGTATAGGTGGAATTCATTTTGACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAAACACTTTATTGTGCTTGTATAGGTGGAATTCATTTTGACAGT  811

seq1  CCATTTGAGTTTGGCTTCACATTCCGGAACCCAGATGATGTCTTCAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGAGTTTGGCTTCACATTCCGGAACCCAGATGATGTCTTCAGGGA  861

seq1  ATTTTTTGGTGGAAGGGACCCATTTTCATTTGACTTCTTTGGTAAGTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGGTGGAAGGGACCCATTTTCATTTGACTTCTTTGGTAAGTACC  911

seq1  TGCCTGGTCCGTCCTTTGGTCTGGCCTAGTGAGGGCTGATGGTACCATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTCCGTCCTTTGGTCTGGCCTAGTGAGGGCTGATGGTACCATGT  961

seq1  TAAATGTTTGCATTTAACATTTTGTTGTGTTACTGAACTCTTGTCTTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTTGCATTTAACATTTTGTTGTGTTACTGAACTCTTGTCTTTTT  1011

seq1  GGACTAGTGGAGTCGTCAGGCATTTCCTGCCAACCTTTTCAGAGTTTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGTGGAGTCGTCAGGCATTTCCTGCCAACCTTTTCAGAGTTTTTT  1061

seq1  GATTGGTGACTTCAGCAATAAAGATTTTAGGGCATTATTTCCCTCTTCCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTGACTTCAGCAATAAAGATTTTAGGGCATTATTTCCCTCTTCCA  1111

seq1  TGTGTATTATTCTATCCTAGTTAATTTGTTTTTGCTCTCTGGTGAATTC  1199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTATTCTATCCTAGTTAATTTGTTTTTGCTCTCTGGTGAATTC  1160

seq1: chr5_29927045_29928167
seq2: B6Ng01-001I08.g_67_1174

seq1  GAATTCAATTTCTGGGTTCAACAAGGCAGAAGAACAGACTCTTTCTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTCTGGGTTCAACAAGGCAGAAGAACAGACTCTTTCTACAT  50

seq1  TGTTCCCTAGACCTCCCAAAATAAATGTGCTTAAATTTTTTAAGTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTAGACCTCCCAAAATAAATGTGCTTAAATTTTTTAAGTATTTC  100

seq1  TCTATTGTAATAAAGACAATTTCCACTTTCTTTTAGGATATTATAGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTAATAAAGACAATTTCCACTTTCTTTTAGGATATTATAGATCT  150

seq1  CTCTACTTGTTGATTAATAGCAAGCTTCCATCAAGTATTGAATATTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTGTTGATTAATAGCAAGCTTCCATCAAGTATTGAATATTCTGA  200

seq1  TTTATCTCGAGTTCCTATAGCAAAAATTTTGCTGGAGAATGTCCTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCGAGTTCCTATAGCAAAAATTTTGCTGGAGAATGTCCTAAAAC  250

seq1  CATTGCACTTTACGTATAGCTCCTGTCCTGAAGCCTCAAGGTGGGTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACTTTACGTATAGCTCCTGTCCTGAAGCCTCAAGGTGGGTGAAC  300

seq1  AATTACTGGGCAGTCAGATGTTTTATTAGTATGTCATGGCTCACAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGGGCAGTCAGATGTTTTATTAGTATGTCATGGCTCACAGTATG  350

seq1  TAGTATACTTTCCTCTGTCTTACCTGTGCCTGACATACATTTTAATTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATACTTTCCTCTGTCTTACCTGTGCCTGACATACATTTTAATTCTG  400

seq1  ATGATCTGGTTATTTATTTCCTGTTCTTTAGAACCTGTCATGGGGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGGTTATTTATTTCCTGTTCTTTAGAACCTGTCATGGGGAAAAA  450

seq1  ATGATCTTAATAGAGAAGATATAAATCAAATTCTAGCCTCTACTGGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTAATAGAGAAGATATAAATCAAATTCTAGCCTCTACTGGATGA  500

seq1  TTCGCTTTATTGATTTAGAATATAGGTGATTTACTTAGAAAGACATATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTTTATTGATTTAGAATATAGGTGATTTACTTAGAAAGACATATGG  550

seq1  GGAAATGATTTTTTTACCTGTGATTGATTTGATGGGTAGAATATGTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATTTTTTTACCTGTGATTGATTTGATGGGTAGAATATGTTGAT  600

seq1  TTTCTTGAAATCCCTTTTCTTTTCCAGGCATCAAGTTTTCTCAGCCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAAATCCCTTTTCTTTTCCAGGCATCAAGTTTTCTCAGCCTTCA  650

seq1  CAGAGGAGTTTCTGGGAGCACCTTTTACCGATCAAATTTTTCATTTCGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGTTTCTGGGAGCACCTTTTACCGATCAAATTTTTCATTTCGTC  700

seq1  ATTCCGGCCTTTGCAGATGCACAAACTGTGTTCCCTTATGAGCCCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGGCCTTTGCAGATGCACAAACTGTGTTCCCTTATGAGCCCTTTCT  750

seq1  CAATGCATTGTTGTTACTTGAGAGTCAAAGTTCAAAACGGTGTAGTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATTGTTGTTACTTGAGAGTCAAAGTTCAAAACGGTGTAGTGGAG  800

seq1  TGCCATGGCTCTTCTATTTTGTTTTAACTGTTGGCGAGAATTATTTAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGCTCTTCTATTTTGTTTTAACTGTTGGCGAGAATTATTTAGGT  850

seq1  ATGAAATATAAGATGTATCTCTCCTAACTCCTATAAAGGCAGCTGAGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATATAAGATGTATCTCTCCTAACTCCTATAAAGGCAGCTGAGCAG  900

seq1  ATGAGTCATTTCAGCAAGAATTTCACAAATTGGTAGAACTCTTGAAAATT  950
      ||||||||||||||||   ||||||||||||||||||||||||||||  |
seq2  ATGAGTCATTTCAGCA--GATTTCACAAATTGGTAGAACTCTTGAAA--T  946

seq1  CAGGGTGTTTTTCTAGTTTATATGACACATTTCTGTGACCATGATGCAAG  1000
      || ||||||||||||| ||||||||||||||||||||| |||||||| ||
seq2  CA-GGTGTTTTTCTAG-TTATATGACACATTTCTGTGA-CATGATGC-AG  992

seq1  ATGTGGGTTATCCCTCAGCCCTCAGAAGTTTGGTTGCTGAGGCTGCTTAG  1050
      |||||||||||||||||||||| |||||||| | |||||| ||||| | |
seq2  ATGTGGGTTATCCCTCAGCCCT-AGAAGTTT-GCTGCTGA-GCTGC-TGG  1038

seq1  AGAGAGGG-ACACATACGAAAAGTTTAGGCGGAGTCTCATGAAACTGCCT  1099
      |||||||| ||||||||| ||||||||||||| |||||||| ||||||||
seq2  AGAGAGGGAACACATACG-AAAGTTTAGGCGG-GTCTCATG-AACTGCCT  1085

seq1  GCACTTTAGACTTTGATGCACAAA  1123
      ||||||||||| ||||||| ||||
seq2  GCACTTTAGAC-TTGATGCCCAAA  1108