BAC Information

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BAC

Clone NameB6Ng01-001J12
Chromosome9 (Build37)5 (Build37)
Map Location 109,544,573 - 109,545,51418,084,521 - 18,084,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106
Downstream geneE330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001J12.bB6Ng01-001J12.g
ACCDH839871DH839872
length1,039915
definitionDH839871|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J12, 5' end.DH839872|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,544,573 - 109,545,514)(18,084,521 - 18,084,577)
sequence
gaattcttgacctcatttttctccccaaccactttttaagtcaagggtat
atgggctggcgagatagcttagcagtgaagaccactggctgctcttccag
agggcctggattcaattgcttgcagacagataacagctaacaactgtctg
taatccattccagagaatatttacccttctcagagatatacatatagaca
aaacagcaaaacatataaaaatcatttttaaaaagaacaaaaagaagcaa
agaaaaaataattgttaatagtcagacgtggtgacagagcacacttttaa
tcccacctgttgggagacagagtcagccagaaatgagtacaagccagcct
ggtttacagagtgacttccaggacagtcagggttatgtgcatatatgtat
acatagaaaccctatcttgaaaaaccataacatagaatattaaagttaat
tgagcttatggtttaaagggattagagtcaatagggtggagaaaaggcat
ggaggcaggaacagtgaagagtgcacatcttgacctgaacataggaagca
aagagacaacatgggaatgaaagtctttttaaacttgaaagactgtctac
agtgacacaacccctccaacagagccacacctcctaatccttccaacata
gttccactaactagtggccaagtttatgggagccatactcattcagatta
ccacatatgcacacaagtgcacaccacacagaattgtgcaaagaaagaaa
ccccatagctaagccacttgagaggcaaaagccttaaaagaatcctaaac
tatatagtgagctcaaggctaacactgttaaaaactgggttttgttttca
aacaaaactacggttatgttctaattatttgcaatacaaacttaaaaatt
ctagttaaactgccagagttctatttggctgcagtttgtacttagatcac
aggctcagatttttactcacccatattttgtagtgaagaaaaaaaattca
agcaggtgggagatgactgcaaactaatagtgttaaaaa
gaattcaagaagttagactccacagaatgatataaccctattaaaaatta
ggaacagagctaaatagagaattctcaattgaggaatctggaagggctca
gaaacacctaaagaactgttcagtatcctcagtcatcaggaaaatgcaaa
ccaaaatgaccttgagattccacctcacacaagtcataatggctaagata
aaaaactcaggtgatagcagatgctggcaagtatgtggagaaagaggaac
gtgcctcctccattgctggtgggaatacaagctggaacaaccactctgga
aatcagtctggtgttttttcagaaaattggacatagtaccacctgaggac
ccagctataccactcctgggcatatatccagaagatgttccaacatgtaa
taaggacacatgctccactatttcatagcagccatatttataaaacccag
gagctagaagcagcccagatatccctcaacagagaaatggataccgaaaa
tgttgtatatttacacaatggagtactattctcaatcactcttaactata
gaattaatgtgtttctcatggtaaacaatataatcaactatcatattcat
atggtcacattttaaactttttaaaatttgtctttttaaatgagaagtta
aaatatttctcatgctgccaaatatatatatatatatatatatatatata
tttataatatatctgttgttatatatataatacacaattacatacatata
tgtatgatatatattatatatacatatatgtgtatatataatatgtgtaa
tatatacatatatgtataaataatatttctgtctctaaaaagaaaatatc
ccctgtttgcttcttctgcttccacaaatggtttttgtctttctttgatc
tcatcctttaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109544573_109545514
seq2: B6Ng01-001J12.b_47_990 (reverse)

seq1  TAAGTACAAACTGCAGCC-AATAGAACTCTGGCAGTTTAACTAGAATTTT  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAGTACAAACTGCAGCCAAATAGAACTCTGGCAGTTTAACTAGAATTTT  50

seq1  TAAGTTTGTATTGCAA--TATTAGAACATAACCGTAGTTTTGTTTTGAAA  97
      ||||||||||||||||   ||||||||||||||||||||||| |||||||
seq2  TAAGTTTGTATTGCAAATAATTAGAACATAACCGTAGTTTTG-TTTGAAA  99

seq1  ACAAAACCCAGTTTTTAACAGTGTTAGCCTTGAGCTCACTATATAGTTTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCCAGTTTTTAACAGTGTTAGCCTTGAGCTCACTATATAGTTTA  149

seq1  GGATTCTTTTAAGGCTTTTGCCTCTCAAGTGGCTTAGCTATGGGGTTTCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTTTAAGGCTTTTGCCTCTCAAGTGGCTTAGCTATGGGGTTTCT  199

seq1  TTCTTTGCACAATTCTGTGTGGTGTGCACTTGTGTGCATATGTGGTAATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCACAATTCTGTGTGGTGTGCACTTGTGTGCATATGTGGTAATC  249

seq1  TGAATGAGTATGGCTCCCATAAACTTGGCCACTAGTTAGTGGAACTATGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGTATGGCTCCCATAAACTTGGCCACTAGTTAGTGGAACTATGT  299

seq1  TGGAAGGATTAGGAGGTGTGGCTCTGTTGGAGGGGTTGTGTCACTGTAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGATTAGGAGGTGTGGCTCTGTTGGAGGGGTTGTGTCACTGTAGA  349

seq1  CAGTCTTTCAAGTTTAAAAAGACTTTCATTCCCATGTTGTCTCTTTGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCAAGTTTAAAAAGACTTTCATTCCCATGTTGTCTCTTTGCTT  399

seq1  CCTATGTTCAGGTCAAGATGTGCACTCTTCACTGTTCCTGCCTCCATGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTCAGGTCAAGATGTGCACTCTTCACTGTTCCTGCCTCCATGCC  449

seq1  TTTTCTCCACCCTATTGACTCTAATCCCTTTAAACCATAAGCTCAATTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCACCCTATTGACTCTAATCCCTTTAAACCATAAGCTCAATTAA  499

seq1  CTTTAATATTCTATGTTATGGTTTTTCAAGATAGGGTTTCTATGTATACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATATTCTATGTTATGGTTTTTCAAGATAGGGTTTCTATGTATACA  549

seq1  TATATGCACATAACCCTGACTGTCCTGGAAGTCACTCTGTAAACCAGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCACATAACCCTGACTGTCCTGGAAGTCACTCTGTAAACCAGGCT  599

seq1  GGCTTGTACTCATTTCTGGCTGACTCTGTCTCCCAACAGGTGGGATTAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTACTCATTTCTGGCTGACTCTGTCTCCCAACAGGTGGGATTAAA  649

seq1  AGTGTGCTCTGTCACCACGTCTGACTATTAACAATTATTTTTTCTTTGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTCTGTCACCACGTCTGACTATTAACAATTATTTTTTCTTTGCT  699

seq1  TCTTTTTGTTCTTTTTAAAAATGATTTTTATATGTTTTGCTGTTTTGTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTTCTTTTTAAAAATGATTTTTATATGTTTTGCTGTTTTGTCT  749

seq1  ATATGTATATCTCTGAGAAGGGTAAATATTCTCTGGAATGGATTACAGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATCTCTGAGAAGGGTAAATATTCTCTGGAATGGATTACAGAC  799

seq1  AGTTGTTAGCTGTTATCTGTCTGCAAGCAATTGAATCCAGGCCCTCTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTAGCTGTTATCTGTCTGCAAGCAATTGAATCCAGGCCCTCTGGA  849

seq1  AGAGCAGCCAGTGGTCTTCACTGCTAAGCTATCTCGCCAGCCCATATACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCCAGTGGTCTTCACTGCTAAGCTATCTCGCCAGCCCATATACC  899

seq1  CTTGACTTAAAAAGTGGTTGGGGAGAAAAATGAGGTCAAGAATTC  942
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTAAAAAGTGGTTGGGGAGAAAAATGAGGTCAAGAATTC  944

seq1: chr5_18084521_18084577
seq2: B6Ng01-001J12.g_454_509 (reverse)

seq1  TTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCA  50
      ||||||||| |||||||||||| |||||||||||||||||||| ||||  
seq2  TTATAAATATGGCTGCTATGAA-ATAGTGGAGCATGTGTCCTTATTACAT  49

seq1  GTTGGAA  57
      |||||||
seq2  GTTGGAA  56