BAC Information

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BAC

Clone NameB6Ng01-001L18
Chromosome5 (Build37)
Map Location 150,356,076 - 150,529,355
singlet/doubletdoublet
Overlap gene4930434E21Rik, Hsp110, EG433968, B3galtl
Upstream geneUbl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062
Downstream geneLOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001L18.bB6Ng01-001L18.g
ACCDH839970DH839971
length997698
definitionDH839970|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L18, 5' end.DH839971|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,356,076 - 150,357,071)(150,528,658 - 150,529,355)
sequence
gaattccaagttaggtcaatccatgtaaagaagcacagatgggcaagaga
gggcgttcccaaggaaacagtctgagtctataggcggaagccatcatgcc
ctgaacttctccgccgcttcccagtactgctgcactgagaattaaagttc
ttaacacgtgaacctgtgggtgacacagtccagtgttgtgtgtagttttt
aaaacgggctaccaccttatcccgggagctgcgaccgagctaccagccgc
tcctggctcccttttgctccgcttagctccaggatcgatcacaaccaacc
cccaaccccggcttctttctaaccccctttgctcaagcttggctccggga
tcggctgctgccaacctcaacccagcttctccctctctacttgtctttgc
tccgggagaggttgagttaccagcccactcctgagaccctagaatccttg
gataaaggacacacagacagctttattattttagaacttgcccgctaggc
agaatcgctgggagcagaatctcctgtctggaaaggcgtgccctcatcaa
ttattatctgtttttcctcctgccctaaactgagtagcttgtatcagcta
gcccctgcctgtagcagaggctgcaggttctagctgccctgaggccttac
atgactgctgtgtcctctttcctccaaagcatggcagaaaaaaacccttt
ccttccctgcgtttccctttcctcttgggacctggaagtcccacctataa
cttctgtccagcaattagcctcccctccctcccttctttattgacaagtc
aagagccaaattggggaccaagaccttagtgacagaacctccctttacag
tccagccatagtcctcaatcccgctttgcttctctgcttcttgcgttaaa
cggatctgttagaaatagcggctctcttctaaacacagtacaccaaccca
aagcagttccatgtgtagaggtttattgggagagaggggggcaggtg
gaattcttgctgtatgttacagaaaagctgatgggaagaagtgggttatg
gtatacggattgacggtacatattctatacaagacaggagaggagtttgc
agtaaagtttaagccagcatctaggggctggtggacggtaagctgaaggc
aaggtgtctgctgtgcacactccacatactctcactatgaatctcagctc
gactgagaagaaagccagggactaccagtctctagatggtgagagttctc
ataattccttcttctcatagtaacaacagtttagaagaacaatttcaagt
gtaagtttgaagcatttggtcatttaagaaagaaacacactaggctggag
agatggctcagtggttaagagtactgactgctctacccaaggtcctgagt
tcaaatcccagcaaccacatggtggttcacaaccatccataatgagatct
gacaacttcttctgtgatatgtctgaggacatctacagtatacttacata
taataataaataaatctttgggctggagggagcaggggctggagcaagtg
gggcccggagcgagcagaggtcctgagttcaatttccagcaaccacatca
tggctcacaaccatctgtacagccacagtatactcatatatatatatata
tatatatatatatatatatatatataatatatgatatatatataataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150356076_150357071
seq2: B6Ng01-001L18.b_49_1045

seq1  GAATTCCAAGTTAGGTCAATCCATG-AAAGAAGCACAGATGGGCAAGAGA  49
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATTCCAAGTTAGGTCAATCCATGTAAAGAAGCACAGATGGGCAAGAGA  50

seq1  GGGCGTTCCCAAGGAAACAGTCTGAGTCTATAGGCGGAAGCCATCATGCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTTCCCAAGGAAACAGTCTGAGTCTATAGGCGGAAGCCATCATGCC  100

seq1  CTGAACTTCTCCGCCGCTTCCCAGTACTGCTGCACTGAGAATTAAAGTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTCTCCGCCGCTTCCCAGTACTGCTGCACTGAGAATTAAAGTTC  150

seq1  TTAACACGTGAACCTGTGGGTGACACAGTCCAGTGTTGTGTGTAGTTTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACGTGAACCTGTGGGTGACACAGTCCAGTGTTGTGTGTAGTTTTT  200

seq1  AAAACGGGCTACCACCTTATCCCGGGAGCTGCGACCGAGCTACCAGCCGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGGCTACCACCTTATCCCGGGAGCTGCGACCGAGCTACCAGCCGC  250

seq1  TCCTGGCTCCCTTTTGCTCCGCTTAGCTCCAGGATCGATCACAACCAACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTCCCTTTTGCTCCGCTTAGCTCCAGGATCGATCACAACCAACC  300

seq1  CCCAACCCCGGCTTCTTTCTAACCCCCTTTGCTCAAGCTTGGCTCCGGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCCGGCTTCTTTCTAACCCCCTTTGCTCAAGCTTGGCTCCGGGA  350

seq1  TCGGCTGCTGCCAACCTCAACCCAGCTTCTCCCTCTCTACTTGTCTTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGCTGCCAACCTCAACCCAGCTTCTCCCTCTCTACTTGTCTTTGC  400

seq1  TCCGGGAGAGGTTGAGTTACCAGCCCACTCCTGAGACCCTAGAATCCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGAGAGGTTGAGTTACCAGCCCACTCCTGAGACCCTAGAATCCTTG  450

seq1  GATAAAGGACACACAGACAGCTTTATTATTTTAGAACTTGCCCGCTAGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGACACACAGACAGCTTTATTATTTTAGAACTTGCCCGCTAGGC  500

seq1  AGAATCGCTGGGAGCAGAATCTCCTGTCTGGAAAGGCGTGCCCTCATCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGCTGGGAGCAGAATCTCCTGTCTGGAAAGGCGTGCCCTCATCAA  550

seq1  TTATTATCTGTTTTTCCTCCTGCCCTAAACTGAGTAGCTTGTATCAGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCTGTTTTTCCTCCTGCCCTAAACTGAGTAGCTTGTATCAGCTA  600

seq1  GCCCCTGCCTGTAGCAGAGGCTGCAGGTTCTAGCTGCCCTGAGGCCTTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCCTGTAGCAGAGGCTGCAGGTTCTAGCTGCCCTGAGGCCTTAC  650

seq1  ATGACTGCTGTGTCCTCTTTCCTCCAAAGCATGGCAGAAAAAAACCCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCTGTGTCCTCTTTCCTCCAAAGCATGGCAGAAAAAAACCCTTT  700

seq1  CCTTCCCTGCGTTTCCCTTTCCTCTTGGGACCTGGAAGTCCCACCTATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGCGTTTCCCTTTCCTCTTGGGACCTGGAAGTCCCACCTATAA  750

seq1  CTTCTGTCCAGCAATTAGCCTCCCCTCCCTCCCTTCTTTATTGACAAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCCAGCAATTAGCCTCCCCTCCCTCCCTTCTTTATTGACAAGTC  800

seq1  AAGAGCCAAATTGGGGACCAAGACCTTAGTGACAGAACCTCCCTTTACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAAATTGGGGACCAAGACCTTAGTGACAGAACCTCCCTTTACAG  850

seq1  TCCAGCCATAGTCCTCAATCCCGCTTTGCTTCTCTGC-TCCTGCGTTAAA  898
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  TCCAGCCATAGTCCTCAATCCCGCTTTGCTTCTCTGCTTCTTGCGTTAAA  900

seq1  CGGATCTGTTAG-AATAGCGGCTCTCCTCTAAACACAGTACACCAACCCA  947
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  CGGATCTGTTAGAAATAGCGGCTCTCTTCTAAACACAGTACACCAACCCA  950

seq1  AAGCAGTTCCATGTGTAAGAGGTTTATTGGGAGAGAGGGGGGCAAGGTG  996
      |||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  AAGCAGTTCCATGTGT-AGAGGTTTATTGGGAGAGAGGGGGGC-AGGTG  997

seq1: chr5_150528658_150529355
seq2: B6Ng01-001L18.g_69_766 (reverse)

seq1  TTATTATATATATATCATATATTATATATATATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATATATATCATATATTATATATATATATATATATATATATATA  50

seq1  TATATATATATATGAGTATACTGTGGCTGTACAGATGGTTGTGAGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATGAGTATACTGTGGCTGTACAGATGGTTGTGAGCCATG  100

seq1  ATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGCTCGCTCCGGGCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGCTCGCTCCGGGCCCCA  150

seq1  CTTGCTCCAGCCCCTGCTCCCTCCAGCCCAAAGATTTATTTATTATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCAGCCCCTGCTCCCTCCAGCCCAAAGATTTATTTATTATTATA  200

seq1  TGTAAGTATACTGTAGATGTCCTCAGACATATCACAGAAGAAGTTGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTATACTGTAGATGTCCTCAGACATATCACAGAAGAAGTTGTCAG  250

seq1  ATCTCATTATGGATGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTATGGATGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAAC  300

seq1  TCAGGACCTTGGGTAGAGCAGTCAGTACTCTTAACCACTGAGCCATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTTGGGTAGAGCAGTCAGTACTCTTAACCACTGAGCCATCTCT  350

seq1  CCAGCCTAGTGTGTTTCTTTCTTAAATGACCAAATGCTTCAAACTTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGTGTGTTTCTTTCTTAAATGACCAAATGCTTCAAACTTACAC  400

seq1  TTGAAATTGTTCTTCTAAACTGTTGTTACTATGAGAAGAAGGAATTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTGTTCTTCTAAACTGTTGTTACTATGAGAAGAAGGAATTATGA  450

seq1  GAACTCTCACCATCTAGAGACTGGTAGTCCCTGGCTTTCTTCTCAGTCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCACCATCTAGAGACTGGTAGTCCCTGGCTTTCTTCTCAGTCGA  500

seq1  GCTGAGATTCATAGTGAGAGTATGTGGAGTGTGCACAGCAGACACCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATTCATAGTGAGAGTATGTGGAGTGTGCACAGCAGACACCTTGC  550

seq1  CTTCAGCTTACCGTCCACCAGCCCCTAGATGCTGGCTTAAACTTTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTACCGTCCACCAGCCCCTAGATGCTGGCTTAAACTTTACTGC  600

seq1  AAACTCCTCTCCTGTCTTGTATAGAATATGTACCGTCAATCCGTATACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTCTCCTGTCTTGTATAGAATATGTACCGTCAATCCGTATACCA  650

seq1  TAACCCACTTCTTCCCATCAGCTTTTCTGTAACATACAGCAAGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACTTCTTCCCATCAGCTTTTCTGTAACATACAGCAAGAATTC  698