BAC Information

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BAC

Clone NameB6Ng01-001N21
Chromosome5 (Build37)
Map Location 101,086,401 - 101,181,277
singlet/doubletdoublet
Overlap geneCoq2, Hpse
Upstream geneA930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8
Downstream geneHel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001N21.bB6Ng01-001N21.g
ACCDH840067DH840068
length1,1111,161
definitionDH840067|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N21, 5' end.DH840068|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,180,156 - 101,181,277)(101,086,401 - 101,087,577)
sequence
gaattccagcaaagctgagctttgccacagtcattttaagaggaggagct
gggtttatcctggaagtacaggttcgagccgttagaagctgggctgtctt
ttagtgaatgtcaaaatcattcaccacttttagaccgacgccgggagctc
ctgcccagagtctcgtcaagggagtctgctatggtccaatctgagtgctg
agttctgcttaggtcactttttaaagtgacatcactaagacacatgttga
gtcatcttctctctgtcataagccggggtatccatctcagggtctgctct
tctctcttgtacagtcacaggggagtgggggagtgtttgccagtcatgct
ggcagcaggcatagctctttggttccacttccaagagtctgcagcagcct
tcagaagccgggtgaccttgaaaatcatcctgcagctgtcgcttgggcct
gagcaggtgcagtttgtaacgacctcaagagggactgaacctttatagac
agcagcctgcatttagctggccctgcctgcacagacttactaaatcaaaa
ttaaatgttaatgatggcagtgtctgtgcccctctgctggggaaactgaa
atgtggagagaggagacgctagcagctgtcagtaatcgggtcactgcctt
cccctgagcccggggtttgaggattcacaccaacatctaataatcgtcca
gctctgtgaaatattcctctgtcaccatgtctgactggaggacatgttct
tcagaggctgacggccctcgagagaagcacagaggaggggatagatacga
gtaggaaacagatgttaacaagcagagtggtcctctgcccctcacaatag
tgtcactcccaggaagctgtggaagctgttccgcagctgctgtgaccaac
acatttcttcagagccggagagcttctccatggcctataatatgtgcttt
ggttgtcttttctataaatgaggatatcctacgacctacaaaatggtctt
gtcagctgaaccttgaagagactctgctctcattattctgatgatgatcg
ctgctaagacccttaagactcaggttcattcacgaacaatggtgctgaat
taaggccactg
gaattcaacacacaagcttcagctatagacatatcagaagtaattcagaa
aaatcaaaaaagggaaaaaaatccccatttaagtgtgtattctttttctc
tacattaacaaggataattttctttgttttgagacaaggtttctctatgg
agccccggctaccctggaattcactctgtagaccaggctggccttgaact
cacagagatgtgttctgatccgctgcctctgggatccaaggcctatgcca
cacacccggcaatgctaactttctgctgacaagctgaagctgagggagga
gcaattcaaagcacacaaacaatgcagttgtgttagttaagaagttcctt
gcctagtgaacaggggttgttttgttttaataatttccataatttacagt
agggaaaacggaggaagaacaaggctaaggtcgaacctggtgagccaggt
gggctcccaccgcagccacagcagcgtagtaggggacagtctgaccattg
ttggctcccgccaggctcagcgctgccaccatggcgaccccaaagccact
aagccactgccttgtgttctcctggaacagcagtgctgtggacttcaggc
cgatcagagcatcgtctttcttgtcctaataccaggaacagaaaagtgtg
tttcaatatttaattcagtactatgaagatcacatttcctaagtagtcaa
cttagccatttttaatatatttacaaggttatacaaccaacactgctctc
tctctaacctaagagtgcaaggttttaaagacgatgcatggagatacatc
acaagctatagaactgagaggtgcacgacaggtcacgataggcgggacat
cgctttcctcacaccagacaaccagcagtttcctttctctgtgcaccact
ctgctatttacaaccccatcaggatttgggattagactttacattaggac
taaaatcaactgttccctctttattcatatagtataattatgtaactaca
tactgtcattatatatatagtaacaaattatcttgtttttgagacagtct
cttcatgttccttgaacttgctggttagaccagctgaccttgcactacaa
aacctgtcagcctctgtttgcttggtgtctgcatctagaatgcatcacac
cacccagtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_101180156_101181277
seq2: B6Ng01-001N21.b_48_1158 (reverse)

seq1  CAGTGG-CTTATATCAGACACCATTGTTTGTGAATGGAACCTTGAGTCTT  49
      |||||| ||||  |||| |||||||||| |||||| ||||| |||||| |
seq2  CAGTGGCCTTAATTCAG-CACCATTGTTCGTGAAT-GAACC-TGAGTC-T  46

seq1  TAGGGGTCTTTAGCCTTCGATCATCCATTCAGAATAATGAGGGGCAGGAG  99
      || ||||| |||| |  ||||||||   |||||||||||| | ||| |||
seq2  TAAGGGTC-TTAG-CAGCGATCATC--ATCAGAATAATGA-GAGCA-GAG  90

seq1  TCTC-TCAAGGTTCAGCTGACAAGACCATTTTGTAGGTCGTTAGGATCTC  148
      |||| ||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TCTCTTCAAGGTTCAGCTGACAAGACCATTTTGTAGGTCG-TAGGATATC  139

seq1  CTCATTTTATAGGAAAAGACAACCAAAGCACATATTATAGGCCCATGGAG  198
      |||| |||||| ||||||||||||||||||||||||||||| ||||||||
seq2  CTCA-TTTATA-GAAAAGACAACCAAAGCACATATTATAGG-CCATGGAG  186

seq1  GAGCTCTCCGGCCCTGGAG-AATGTGTTGGTCACAGCAGCTGCGGGACAG  247
       ||||||||||| ||| || ||||||||||||||||||||||||| ||||
seq2  AAGCTCTCCGGCTCTGAAGAAATGTGTTGGTCACAGCAGCTGCGGAACAG  236

seq1  CTTCCACAGCTTCCTGGGAGTGACACTATTGTGAGGGGCAGAGGACCACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAGCTTCCTGGGAGTGACACTATTGTGAGGGGCAGAGGACCACT  286

seq1  CTGCTTGTTAACATCTGTTTCCTACTCGTATCTATCCCCTCCTCTGTGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTTAACATCTGTTTCCTACTCGTATCTATCCCCTCCTCTGTGCT  336

seq1  TCTCTCGAGGGCCGTCAGCCTCTGAAGAACATGTCCTCCAGTCAGACATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGAGGGCCGTCAGCCTCTGAAGAACATGTCCTCCAGTCAGACATG  386

seq1  GTGACAGAGGAATATTTCACAGAGCTGGACGATTATTAGATGTTGGTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAGGAATATTTCACAGAGCTGGACGATTATTAGATGTTGGTGTG  436

seq1  AATCCTCAAACCCCGGGCTCAGGGGAAGGCAGTGACCCGATTACTGACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAAACCCCGGGCTCAGGGGAAGGCAGTGACCCGATTACTGACAG  486

seq1  CTGCTAGCGTCTCCTCTCTCCACATTTCAGTTTCCCCAGCAGAGGGGCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCGTCTCCTCTCTCCACATTTCAGTTTCCCCAGCAGAGGGGCAC  536

seq1  AGACACTGCCATCATTAACATTTAATTTTGATTTAGTAAGTCTGTGCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGCCATCATTAACATTTAATTTTGATTTAGTAAGTCTGTGCAGG  586

seq1  CAGGGCCAGCTAAATGCAGGCTGCTGTCTATAAAGGTTCAGTCCCTCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGCTAAATGCAGGCTGCTGTCTATAAAGGTTCAGTCCCTCTTG  636

seq1  AGGTCGTTACAAACTGCACCTGCTCAGGCCCAAGCGACAGCTGCAGGATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGTTACAAACTGCACCTGCTCAGGCCCAAGCGACAGCTGCAGGATG  686

seq1  ATTTTCAAGGTCACCCGGCTTCTGAAGGCTGCTGCAGACTCTTGGAAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGGTCACCCGGCTTCTGAAGGCTGCTGCAGACTCTTGGAAGTG  736

seq1  GAACCAAAGAGCTATGCCTGCTGCCAGCATGACTGGCAAACACTCCCCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAGAGCTATGCCTGCTGCCAGCATGACTGGCAAACACTCCCCCA  786

seq1  CTCCCCTGTGACTGTACAAGAGAGAAGAGCAGACCCTGAGATGGATACCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGTGACTGTACAAGAGAGAAGAGCAGACCCTGAGATGGATACCC  836

seq1  CGGCTTATGACAGAGAGAAGATGACTCAACATGTGTCTTAGTGATGTCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTATGACAGAGAGAAGATGACTCAACATGTGTCTTAGTGATGTCAC  886

seq1  TTTAAAAAGTGACCTAAGCAGAACTCAGCACTCAGATTGGACCATAGCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGTGACCTAAGCAGAACTCAGCACTCAGATTGGACCATAGCAG  936

seq1  ACTCCCTTGACGAGACTCTGGGCAGGAGCTCCCGGCGTCGGTCTAAAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTTGACGAGACTCTGGGCAGGAGCTCCCGGCGTCGGTCTAAAAGT  986

seq1  GGTGAATGATTTTGACATTCACTAAAAGACAGCCCAGCTTCTAACGGCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGATTTTGACATTCACTAAAAGACAGCCCAGCTTCTAACGGCTC  1036

seq1  GAACCTGTACTTCCAGGATAAACCCAGCTCCTCCTCTTAAAATGACTGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTACTTCCAGGATAAACCCAGCTCCTCCTCTTAAAATGACTGTG  1086

seq1  GCAAAGCTCAGCTTTGCTGGAATTC  1122
      |||||||||||||||||||||||||
seq2  GCAAAGCTCAGCTTTGCTGGAATTC  1111

seq1: chr5_101086401_101087577
seq2: B6Ng01-001N21.g_68_1228

seq1  GAATTCAACACACAAGCTTCAGCTATAGACATATCAGAAGTAATTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACACAAGCTTCAGCTATAGACATATCAGAAGTAATTCAGAA  50

seq1  AAATCAAAAAAGGGAAAAAAATCCCCATTTAAGTGTGTATTCTTTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAAAGGGAAAAAAATCCCCATTTAAGTGTGTATTCTTTTTCTC  100

seq1  TACATTAACAAGGATAATTTTCTTTGTTTTGAGACAAGGTTTCTCTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAACAAGGATAATTTTCTTTGTTTTGAGACAAGGTTTCTCTATGG  150

seq1  AGCCCCGGCTACCCTGGAATTCACTCTGTAGACCAGGCTGGCCTTGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGGCTACCCTGGAATTCACTCTGTAGACCAGGCTGGCCTTGAACT  200

seq1  CACAGAGATGTGTTCTGATCCGCTGCCTCTGGGATCCAAGGCCTATGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATGTGTTCTGATCCGCTGCCTCTGGGATCCAAGGCCTATGCCA  250

seq1  CACACCCGGCAATGCTAACTTTCTGCTGACAAGCTGAAGCTGAGGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCGGCAATGCTAACTTTCTGCTGACAAGCTGAAGCTGAGGGAGGA  300

seq1  GCAATTCAAAGCACACAAACAATGCAGTTGTGTTAGTTAAGAAGTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCAAAGCACACAAACAATGCAGTTGTGTTAGTTAAGAAGTTCCTT  350

seq1  GCCTAGTGAACAGGGGTTGTTTTGTTTTAATAATTTCCATAATTTACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTGAACAGGGGTTGTTTTGTTTTAATAATTTCCATAATTTACAGT  400

seq1  AGGGAAAACGGAGGAAGAACAAGGCTAAGGTCGAACCTGGTGAGCCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAACGGAGGAAGAACAAGGCTAAGGTCGAACCTGGTGAGCCAGGT  450

seq1  GGGCTCCCACCGCAGCCACAGCAGCGTAGTAGGGGACAGTCTGACCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCACCGCAGCCACAGCAGCGTAGTAGGGGACAGTCTGACCATTG  500

seq1  TTGGCTCCCGCCAGGCTCAGCGCTGCCACCATGGCGACCCCAAAGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCCCGCCAGGCTCAGCGCTGCCACCATGGCGACCCCAAAGCCACT  550

seq1  AAGCCACTGCCTTGTGTTCTCCTGGAACAGCAGTGCTGTGGACTTCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTGCCTTGTGTTCTCCTGGAACAGCAGTGCTGTGGACTTCAGGC  600

seq1  CGATCAGAGCATCGTCTTTCTTGTCCTAATACCAGGAACAGAAAAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCAGAGCATCGTCTTTCTTGTCCTAATACCAGGAACAGAAAAGTGTG  650

seq1  TTTCAATATTTAATTCAGTACTATGAAGATCACATTTCCTAAGTAGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTTAATTCAGTACTATGAAGATCACATTTCCTAAGTAGTCAA  700

seq1  CTTAGCCATTTTTAATATATTTACAAGGTTATACAACCAACACTGCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCATTTTTAATATATTTACAAGGTTATACAACCAACACTGCTCTC  750

seq1  TCTCTAACCTAAGAGTGCAAGGTTTTAAAGACGATGCATGGAGATACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACCTAAGAGTGCAAGGTTTTAAAGACGATGCATGGAGATACATC  800

seq1  ACAAGCTATAGAACTGAGAGGTGCAGGACAGGTCACGATAGGCGGGACAT  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAAGCTATAGAACTGAGAGGTGCACGACAGGTCACGATAGGCGGGACAT  850

seq1  CGC-TTCCTCACACCAGACAACCAGCAG-TTCCCTTCTCTGTGCACCACT  898
      ||| |||||||||||||||||||||||| |||| ||||||||||||||||
seq2  CGCTTTCCTCACACCAGACAACCAGCAGTTTCCTTTCTCTGTGCACCACT  900

seq1  CTGCTATTTACAACCCCATCAGGATTTGGGATTAGACTTTTACATTAGGA  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGCTATTTACAACCCCATCAGGATTTGGGATTAGAC-TTTACATTAGGA  949

seq1  CTAAAATCAACTGTTTCCCTCTTTATTCAATATAAGTATTAATTATGTAA  998
      ||||||||||||| |||||||||||||| |||| |||| |||||||||||
seq2  CTAAAATCAACTG-TTCCCTCTTTATTC-ATAT-AGTA-TAATTATGTAA  995

seq1  CTACAATTACTGTCATTATATTATTATAGTTAACAAAATTTATCTTGTTT  1048
      |||||  ||||||||||||||   ||||| |||||||  |||||||||||
seq2  CTACA--TACTGTCATTATAT--ATATAG-TAACAAA--TTATCTTGTTT  1038

seq1  TTGAGACAGTCTCTCCATGTTCCCTGGAACTTGCTGTGTAGACCAGGCTG  1098
      |||||||||||||| |||||| ||| ||||||||||  ||||||| ||||
seq2  TTGAGACAGTCTCTTCATGTT-CCTTGAACTTGCTGGTTAGACCA-GCTG  1086

seq1  ACCTTGGCACTCACAGAGCTGTCAGCCTCTGTTTGCTGGGTGCTGGCATC  1148
      ||||| |||||   | | ||||||||||||||||||| ||||   |||||
seq2  ACCTT-GCACTACAAAACCTGTCAGCCTCTGTTTGCTTGGTGTCTGCATC  1135

seq1  TAAAGGTATGCACCACCACACCCAGTTTC  1177
      ||   | ||||| |||  |||||||||||
seq2  TA---GAATGCATCACACCACCCAGTTTC  1161