BAC Information

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BAC

Clone NameB6Ng01-002I03
Chromosome5 (Build37)
Map Location 57,940,319 - 58,101,826
singlet/doubletdoublet
Overlap geneEG666465
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721
Downstream genePcdh7, LOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002I03.bB6Ng01-002I03.g
ACCDH840509DH840510
length432794
definitionDH840509|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I03, 5' end.DH840510|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,101,395 - 58,101,826)(57,940,319 - 57,941,109)
sequence
gaattccagttacaagagattaagaactaaaattccttccaatccaggct
cctccttgtcacacctatggtttaaagggtgtttaaaatgccacctgctt
tttaggtcactttttaaaggattctgcaaatggtagagttgagaaagcaa
tatatatggattgaatgtgttaagctgtactattgtggatccacacttgc
ttttgttcatggttaagtggcattgagcccataatgtaccagcttttaag
aatttccccagcaccaaatttgtgagcttagaaactatagaggcatagaa
tgtgtagtgccattggatgtgttatgctatgttctcgaaaagagggtcag
agcagaatcaacgtttaaggtccagactcagaaagcggacaaagacatgc
aaaattctggaggaagagggagaggaaggggg
gaattctttgtttagctctgagccccatttttaatagggttatttgattt
tctgaagtccaccttcttgataaaatgaaatgcactatattaataaatgt
ttgaaaaacaaacataatataaatagttcaggattattgacttagttttc
tcattataaactacataatatgcctaacttctctaaaattaatattatat
tttaccatttccccatttgtgatatttgaagcctgtgtttcagacatatt
tttaacagtgttgttttgtaaagaactaactcctgggttatctggtatct
tgtttgcatattatattccaacttttgcaaatcttaagatgtacggtgat
gggttttttgttgttgtttggttggttgggtttttccatccttattaaga
attgtgtgggatccctcaatattcaaggatgtgtgttcatatcagcaatt
ccttctagtaacatagctccatccccacagcctttgatttgccgttgctt
acattaaattttaaatgatagaattgtgttttatgaattcaaataatctg
ggaaatttccaactttgctcttgttgctgattttctttgctattccacta
tgtctgagcatcctgtataatttcactcatgttaatttgttgatacttac
tatatgcctcggcacatgttcaatttccgtaaattatctttgaacactac
aaagagatctttattcttcatttgttcagtgtagtgttgtttatatgata
atcagattatattttgttggcttatttggggggggggaagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58101395_58101826
seq2: B6Ng01-002I03.b_43_474 (reverse)

seq1  CCCCCTTCCTCTCCCTCTTCCTCCAGAATTTTGCATGTCTTTGTCCGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCCTCTCCCTCTTCCTCCAGAATTTTGCATGTCTTTGTCCGCTT  50

seq1  TCTGAGTCTGGACCTTAAACGTTGATTCTGCTCTGACCCTCTTTTCGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCTGGACCTTAAACGTTGATTCTGCTCTGACCCTCTTTTCGAGA  100

seq1  ACATAGCATAACACATCCAATGGCACTACACATTCTATGCCTCTATAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCATAACACATCCAATGGCACTACACATTCTATGCCTCTATAGTT  150

seq1  TCTAAGCTCACAAATTTGGTGCTGGGGAAATTCTTAAAAGCTGGTACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTCACAAATTTGGTGCTGGGGAAATTCTTAAAAGCTGGTACATT  200

seq1  ATGGGCTCAATGCCACTTAACCATGAACAAAAGCAAGTGTGGATCCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTCAATGCCACTTAACCATGAACAAAAGCAAGTGTGGATCCACAA  250

seq1  TAGTACAGCTTAACACATTCAATCCATATATATTGCTTTCTCAACTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAGCTTAACACATTCAATCCATATATATTGCTTTCTCAACTCTAC  300

seq1  CATTTGCAGAATCCTTTAAAAAGTGACCTAAAAAGCAGGTGGCATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCAGAATCCTTTAAAAAGTGACCTAAAAAGCAGGTGGCATTTTAA  350

seq1  ACACCCTTTAAACCATAGGTGTGACAAGGAGGAGCCTGGATTGGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTTAAACCATAGGTGTGACAAGGAGGAGCCTGGATTGGAAGGAA  400

seq1  TTTTAGTTCTTAATCTCTTGTAACTGGAATTC  432
      ||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCTTAATCTCTTGTAACTGGAATTC  432

seq1: chr5_57940319_57941109
seq2: B6Ng01-002I03.g_68_861

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATAGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATAGGGTTATTTGATTT  50

seq1  TCTGAAGTCCACCTTCTTGATAAAATGAAATGCACTATATTAATAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCCACCTTCTTGATAAAATGAAATGCACTATATTAATAAATGT  100

seq1  TTGAAAAACAAACATAATATAAATAGTTCAGGATTATTGACTTAGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAACAAACATAATATAAATAGTTCAGGATTATTGACTTAGTTTTC  150

seq1  TCATTATAAACTACATAATATGCCTAACTTCTCTAAAATTAATATTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATAAACTACATAATATGCCTAACTTCTCTAAAATTAATATTATAT  200

seq1  TTTACCATTTCCCCATTTGTGATATTTGAAGCCTGTGTTTCAGACATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATTTCCCCATTTGTGATATTTGAAGCCTGTGTTTCAGACATATT  250

seq1  TTTAACAGTGTTGTTTTGTAAAGAACTAACTCCTGGGTTATCTGGTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGTGTTGTTTTGTAAAGAACTAACTCCTGGGTTATCTGGTATCT  300

seq1  TGTTTGCATATTATATTCCAACTTTTGCAAATCTTAAGATGTACGGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCATATTATATTCCAACTTTTGCAAATCTTAAGATGTACGGTGAT  350

seq1  GGGTTTTTTGTTGTTGTTTGGTTGGTTGGGTTTTTCCATCCTTATTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTGTTGTTGTTTGGTTGGTTGGGTTTTTCCATCCTTATTAAGA  400

seq1  ATTGTGTGGGATCCCTCAATATTCAAGGATGTGTGTTCATATCAGCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGGGATCCCTCAATATTCAAGGATGTGTGTTCATATCAGCAATT  450

seq1  CCTTCTAGTAACATAGCTCCATCCCCACAGCCTTTGATTTGCCGTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGTAACATAGCTCCATCCCCACAGCCTTTGATTTGCCGTTGCTT  500

seq1  ACATTAAATTTTAAATGATAGAATTGTGTTTTATGAATTCAAATAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAATTTTAAATGATAGAATTGTGTTTTATGAATTCAAATAATCTG  550

seq1  GGAAATTTCCAACTTTGCTCTTGTTGCTGATTTTCTTTGCTATTCCACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTCCAACTTTGCTCTTGTTGCTGATTTTCTTTGCTATTCCACTA  600

seq1  TGTCTGAGCATCCTGTATAATTTCACTCATGTTAATTTGTTGATACTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGCATCCTGTATAATTTCACTCATGTTAATTTGTTGATACTTAC  650

seq1  TATATGCCTCGGCACATGTTCAATTTCCGTAAATTATCTTTGAACACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCTCGGCACATGTTCAATTTCCGTAAATTATCTTTGAACACTAC  700

seq1  AAAGAGATCTTTATTCTTCATTTGTTCAGTGTAGTGTTGTTTATATGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATCTTTATTCTTCATTTGTTCAGTGTAGTGTTGTTTATATGATA  750

seq1  ATCAGATTATA-TTTGTTGGCTTATTTGGGGGGGGG--AGTAAA  791
      ||||||||||| ||||||||||||||||||||||||  ||||||
seq2  ATCAGATTATATTTTGTTGGCTTATTTGGGGGGGGGGAAGTAAA  794