BAC Information

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BAC

Clone NameB6Ng01-002I09
Chromosome5 (Build37)
Map Location 45,688,300 - 45,688,776
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002I09.b
ACCDH840519
length471
definitionDH840519|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I09, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
acagaaagcttctgcatgagatcttttccccagggctccaatatctttgg
accatagtgtgggcttttaaagtgcatccccataataccactaccaactc
tatggcaaacaccattttaaatatcttacgtagatttaccaatttaaact
tcataataaccttgtgatgtgggaattttatttctttcaatcaaagtaat
ggatgaataaatagcttaaggaatcgcataccccttgaaggtgacagaga
ttctggcatcagatctcttaactaggacggtgacttgccttcaaagttca
gtattcacaatggaacttgaaatagtaccgtggttatggtttggggctaa
aaattctaactgaagtgactctgcttagtttaagttggtgcttcagagca
tgtcagactctactaggcacttttttcttttttcttttctaatcttatct
tttctttttttttggtggggt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_45688300_45688776
seq2: B6Ng01-002I09.b_43_519 (reverse)

seq1  ACCCCACCAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAAGAAAAA  50
      |||||||||||||||||||||||| ||||  |||||||||||||||||||
seq2  ACCCCACCAAAAAAAAAGAAAAGATAAGATTAGAAAAGAAAAAAGAAAAA  50

seq1  AGTGCCTAGTAGAGTCTGACATGCTCTGAAGCACCAACTTTAACTAAGCA  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTGCCTAGTAGAGTCTGACATGCTCTGAAGCACCAACTTAAACTAAGCA  100

seq1  GAGTCACTTCAGTTGGAATTTTTAGCCCCAAACCATAACCACGGTACTAT  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGTCACTTCAGTTAGAATTTTTAGCCCCAAACCATAACCACGGTACTAT  150

seq1  TTCAAGTTCCATTGTGAATACTGAACTTTGAAGGCAAGTCACCGTCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCCATTGTGAATACTGAACTTTGAAGGCAAGTCACCGTCCTAG  200

seq1  TTAAGAGATCTGATGCCAGAATCTCTGTCACCTTCAAGGGGTATGCGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGATCTGATGCCAGAATCTCTGTCACCTTCAAGGGGTATGCGATT  250

seq1  CCTTAAGCTATTTATTCATCCATTACTTTGATTGAAAGAAATAAAATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGCTATTTATTCATCCATTACTTTGATTGAAAGAAATAAAATTCC  300

seq1  CACATCACAAGGTTATTATGAAGTTTAAATTGGTAAATCTACGTAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACAAGGTTATTATGAAGTTTAAATTGGTAAATCTACGTAAGATA  350

seq1  TTTAAAATGGTGTTTGCCATAGAGTTGGTAGTGGTATTATGGGGATGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGGTGTTTGCCATAGAGTTGGTAGTGGTATTATGGGGATGCAC  400

seq1  TTTAAAAGCCCACACTATGGTCCAAAGATATTGGAGCCCTGGGGAGTAGA  450
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TTTAAAAGCCCACACTATGGTCCAAAGATATTGGAGCCCTGGGGAAAAGA  450

seq1  TCTCATGCAGAAGCTTTCTGTGAATTC  477
      |||||||||||||||||||||||||||
seq2  TCTCATGCAGAAGCTTTCTGTGAATTC  477