BAC Information

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BAC

Clone NameB6Ng01-002J17
Chromosome5 (Build37)
Map Location 17,953,131 - 17,953,474
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002J17.bB6Ng01-002J17.g
ACCDH840580DH840581
length1,243898
definitionDH840580|Mus musculus domesticus DNA, BAC clone: B6Ng01-002J17, 5' end.DH840581|Mus musculus domesticus DNA, BAC clone: B6Ng01-002J17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagattgcaagctttaaaaagactcaacgaacttactagactta
agagatttataacagtgctgatgaattactgccttaattgcaattttaac
ttcctttacattatctaccacagccttagttcagcaactgcataccgctc
attttgttaatgatatgcataagaatatttctgtagccttgtcagagttg
tatattatagataaaacattagaagcaaaggttaacaccctagaagtagt
agtgctggcaattgggcaagatattactaatattaagaccaggttagcta
ctaaatgtcatgcttctttccaatatatttgtgtcacccccttaccttat
aatacaaccactgactgggaaaagactaaagctcattaacagggaatatg
gagagatactgatatttctcatgacttagaacagttaaaggcaaaatttt
cagatattagtaaaagccatgtggacacttggaacattgatgtattggct
agagatttgaaaaacaacctaagtgcattgaaccccctggattgggttca
atatataatcctacttgctattattttttggcattgttttattagtaatc
attgtgtatccactcatcattagagtgctcctgaggtctgtagctacaac
gaggcgggacatcctggaacttcggctgaaaataaaaaaaaaaaaagaaa
gggagaaatgccacgcactccggtcgagtcagtttgacaagccgagaggc
ttagaagctgctcatgaggaaaaagggagtttcacgccacgcccgccatc
ctggagtctggtgttccctctaatccatacattaattttccattcccgtg
ttagtctagtgtatggatccatgtgctctctgttagtattaccctattat
aagtgccttttaagattgaattctgacatagctaaacccagtgttccaag
atcccagaagcagcaaggaagtttaacttattcagtaactaattaagcat
tacatagacagggtcagtgctcactggtctgaagaagagctgggatctca
ctgaaatagaatcttagtacaggctacatttcatacttatagcagttgaa
atacctctccttgacatgcaattttcagaaaagaataggaatagcaagct
tgaaaataaggttccatgaccctacattattcttgagctgcaggatataa
aacctgtgtcctattacactaaagtgtgaaattctttgtccgt
gaattcctatttttctctccaagtgtgatttctccaataaacagaaccag
ttcagcatagtctgtgtcctgatcaacaatgatgtttgttttccaatcac
tgcctctgtttcccagatgaagtcctttcctggaagacagacagagtcat
tacaaaaggatctacacagttagaggcaattctgcttaacctcacaaaga
gcacaaccatctcagctgcactggatgagcaagtatgaaggtcagatgtg
acatttgtttagggactgtggtagtttgaatatccttggcccatggaaag
tggcacttgtaggagctgtagccttattggaaaaggtgtgtccttgttgg
aggaagtgtgttactgggcagatggtcttatagggctcctagtgttcaag
ttctgtttagggcagaagggagttccatcctggtttccttaggattaaaa
tgtagtactattggcctccaggatcatgtctgcctgcatgctgctatctt
tttttttttccttttttattttttctcttttttttattacgtattttcct
caattacatttccaatgctatctcaaaagtcccccacagcctccccccca
ctcccctacccacccattcccattttttggccctgcgttcccctgtactg
gggcatataaagtttgcctgaccaatgggcctctctttccagtgatggcc
gactaggccatcttttgatacatatgcagctagagtcaagagctctgggg
tactggttagttcataatgttgttccaccgatagggttgcagatctcttt
agctccttggatacttttctctagctcctccattgggggaccctgtgatc
catccatagctgactgtgagcatccaccttcttgtgtttgctaggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17953131_17953474
seq2: B6Ng01-002J17.g_567_921

seq1  TTTTTTTTCC-TTTTTATTTTT----TTTTTTTTATTACGTATTTTCCTC  45
      |||||||||| |||||||||||    ||||||||||||||||||||||||
seq2  TTTTTTTTCCTTTTTTATTTTTTCTCTTTTTTTTATTACGTATTTTCCTC  50

seq1  AATTACATTTCCAATGCTATCCCAAAAGTCTCCCACA-----CCCCCCAC  90
      ||||||||||||||||||||| |||||||| ||||||     ||||||||
seq2  AATTACATTTCCAATGCTATCTCAAAAGTCCCCCACAGCCTCCCCCCCAC  100

seq1  TCCCTTACCCACCCATTCCCATTTTTTGGCCCTGACGTTCCCCTGTACTG  140
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCCCTACCCACCCATTCCCATTTTTTGGCCCTG-CGTTCCCCTGTACTG  149

seq1  GGGCATATAAAGTTTGCCTGTCCAGTGGGCCTCTCTTTCCAGTGATGGCC  190
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  GGGCATATAAAGTTTGCCTGACCAATGGGCCTCTCTTTCCAGTGATGGCC  199

seq1  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGG  249

seq1  TACTGGTTAGTTCATAATGTTGTTCCACCGATAGGGTTGCAGATCTCTTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTAGTTCATAATGTTGTTCCACCGATAGGGTTGCAGATCTCTTT  299

seq1  AGCTCCTTGTATAC-TTTCTCTAGCTCCTCCATTGGGGG-CCCTGTGATC  338
      ||||||||| |||| |||||||||||||||||||||||| ||||||||||
seq2  AGCTCCTTGGATACTTTTCTCTAGCTCCTCCATTGGGGGACCCTGTGATC  349

seq1  CATCCA  344
      ||||||
seq2  CATCCA  355