BAC Information

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BAC

Clone NameB6Ng01-002K16
Chromosome5 (Build37)
Map Location 113,260,802 - 113,409,218
singlet/doubletdoublet
Overlap geneMyo18b, Adrbk2
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
Downstream geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K16.bB6Ng01-002K16.g
ACCDH840622DH840623
length1,1481,093
definitionDH840622|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K16, 5' end.DH840623|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,408,083 - 113,409,218)(113,260,802 - 113,261,892)
sequence
gaattcccaaatgtggaatttcagcttagctcagggctgagtgttcagga
ggtgtcttggctcaaatatcttcagctctggacttgcaagctgaatcttc
atatcttattaaaaaaaaaaaaaccaaacacaattgcccactttattaaa
attattccccacaggccttttggcagttggatgcctccagcaaacgagat
actgtccagctgataaatatcgaatgtggttttcctgcaaatgggtctct
cggttgctggatgtggcagctctaacggcacgttggagaccctgtggtgt
ggcggttggtgtggcagatcagcccttccaccctccaattccctacaggg
acttgctcttctgagctgaagtcacagttcaatctcagtggaaagtcctg
tgtcagatccttcactgttctctctgtggcctgtacacatgtccaggcct
gactggcacgtccctttccctagaatccttcatggctgttcatggccaca
ctgatttttccatagctctgacttagacagccctaaccaggggaaaaaga
ggagaagaagcgcaagccactgtcctcacatgaatatcacctggtgatag
gcaaagggaagcaaattggcgggtgggggctgtttacccaatgaggcgtg
gcaactccctgaacatggccctagctgtcagctccaaagcctgtgacatg
tggtctagtatggtcaccctagcacgccaggaatgtgggaaggagcagag
atagaccacaaacatcaaccacactgagccaggactcacacaatagtccc
ctctgtcatggtaacctcacgtgacagaccgctatgcttgctgtgggact
ccctgagggctccccggtcatatgtgcaatgtgacacaatgcgtgggaca
ctcccatagcccctccatagctgggcgtaaagactcccaactctggtgtg
gggggtgcatgctcacagtccctgcactcgggcaagggaaagcagaaaga
tacgaagacagctcgggatctttggttctttccctgctgctgtggataaa
acactttgaaagaggcacttctgggggaggatgattggctcaaggctcag
ttcggtcttggggccagaaactcagggcagcaaaagcttgaagcagct
gaattcttcttagccacaatgaggaatgaagtcaggccacttgcacaaga
gtagccggcactggaaataatcgcattagaagaccctgggtccatctcag
gaagacagaaccattgctttctcttgtctgtggatcctggactagataca
gacataagatcatgtgtgtgctgattgcaagacagtagtagactcaaatc
cctctgggagcaaagagggataatggtgggggaggggcagcaaggtaaaa
aaaaaagaatgagaacagacccaaagctcgttacatgctaccccgtggac
actatccaacccatcagatagagcgatccacaagggagctgggaaagagg
ctccacataatccttcgccataattcttagtaatacatcaatgtttcttt
cttcagaaagagaaaaggcagctgctgttccagtgggtggagctgcaaac
ccggggcctggtacctgcccaatgccaccagctctatctccccatgaagc
attcagagacctttcttcactatcaaaaagctcagggtccacttcagcta
cagccttaaaggtttgtgatccagactgatgcctgctggctcctgggagc
ctgagatgctaggatgaactaaaagcatgagcccatggcaggatcaatag
aggcatagcacacagtgtgatcagagcaaggactgactggggtgtagagt
atcagcactaagagccatgagcctagggtggagaaggcaggtgcttccaa
ccccagccccaacctgacgtgtgggatccgtctactgcggtagatggtgg
gatggagatctctgcttttccacttctcatatgaccttgggcaagttcca
tgtcctctccagactataccttgaggaacacacagcttttcagaaagctc
tttgagtctgtcgatggagtcctagagacctcgtttcacagtcttggtgg
gctcactgaggccctggactacaaagcctcactctagatcaagcggggaa
ttgttctttcgtcacaagaattagactctggaggtggacagctgcacaag
ttcaaatggtcttttagatttgttagtgggtggtttttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_113408083_113409218
seq2: B6Ng01-002K16.b_43_1190 (reverse)

seq1  AGCTGCTTCAGGCTTCTGCTGCCCTGAG-TTCT-GCGCCAGGA-CGGACT  47
      |||||||||| |||| |||||||||||| |||| || ||| || || |||
seq2  AGCTGCTTCAAGCTTTTGCTGCCCTGAGTTTCTGGCCCCAAGACCGAACT  50

seq1  GAGCCTTGAGCAAATCATTCCTCCCCAG-AGTGCTTCTGTCAAAGTGTTT  96
      ||||||||||| |||||| |  |||||| ||||| ||| |||||||||||
seq2  GAGCCTTGAGCCAATCATCCTCCCCCAGAAGTGCCTCTTTCAAAGTGTTT  100

seq1  TTATCACAGCAGCAGGGAAAGGAACAAAGAT-CCGGGCTGTCTTCGTATC  145
      |   ||||||||||||||||| | ||||||| ||| ||||||||||||||
seq2  TATCCACAGCAGCAGGGAAAGAACCAAAGATCCCGAGCTGTCTTCGTATC  150

seq1  TTTCTGCTTTCCCTTG-CCGAGTGCAGGGACTGTGGGCATGCA-CCACCA  193
      |||||||||||||||| |||||||||||||||||| ||||||| || |||
seq2  TTTCTGCTTTCCCTTGCCCGAGTGCAGGGACTGTGAGCATGCACCCCCCA  200

seq1  CA-CAGAGTTGGGAGTCTTTATG-CCAGCTATGGA-GAGCTATGTGAGTG  240
      || |||||||||||||||||| | ||||||||||| | |||||| |||||
seq2  CACCAGAGTTGGGAGTCTTTACGCCCAGCTATGGAGGGGCTATGGGAGTG  250

seq1  TCCCACGCA-TGTGTCACATTGCACATATGACCGGGGAGCCCTCAGGGAG  289
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACGCATTGTGTCACATTGCACATATGACCGGGGAGCCCTCAGGGAG  300

seq1  TCCCACAGC-AGCATAGCGGTCTGTCACGTGAGGTTACCATGACAGAGGG  338
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGCAAGCATAGCGGTCTGTCACGTGAGGTTACCATGACAGAGGG  350

seq1  GACTATTGTGTGAGTCCTGGCTCAGTGTGGTTGATGTTTGTGGTCTATCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTGTGTGAGTCCTGGCTCAGTGTGGTTGATGTTTGTGGTCTATCT  400

seq1  CTGCTCCTTCCCACATTCCTGGCGTGCTAGGGTGACCATACTAGACCACA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTTCCCACATTCCTGGCGTGCTAGGGTGACCATACTAGACCACA  450

seq1  TGTCACAGGCTTTGGAGCTGACAGCTAGGGCCATGTTCAGGGAGTTGCCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGGCTTTGGAGCTGACAGCTAGGGCCATGTTCAGGGAGTTGCCA  500

seq1  CGCCTCATTGGGTAAACAGCCCCCACCCGCCAATTTGCTTCCCTTTGCCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCATTGGGTAAACAGCCCCCACCCGCCAATTTGCTTCCCTTTGCCT  550

seq1  ATCACCAGGTGATATTCATGTGAGGACAGTGGCTTGCGCTTCTTCTCCTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGGTGATATTCATGTGAGGACAGTGGCTTGCGCTTCTTCTCCTC  600

seq1  TTTTTCCCCTGGTTAGGGCTGTCTAAGTCAGAGCTATGGAAAAATCAGTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCTGGTTAGGGCTGTCTAAGTCAGAGCTATGGAAAAATCAGTG  650

seq1  TGGCCATGAACAGCCATGAAGGATTCTAGGGAAAGGGACGTGCCAGTCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGAACAGCCATGAAGGATTCTAGGGAAAGGGACGTGCCAGTCAG  700

seq1  GCCTGGACATGTGTACAGGCCACAGAGAGAACAGTGAAGGATCTGACACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGACATGTGTACAGGCCACAGAGAGAACAGTGAAGGATCTGACACA  750

seq1  GGACTTTCCACTGAGATTGAACTGTGACTTCAGCTCAGAAGAGCAAGTCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTCCACTGAGATTGAACTGTGACTTCAGCTCAGAAGAGCAAGTCC  800

seq1  CTGTAGGGAATTGGAGGGTGGAAGGGCTGATCTGCCACACCAACCGCCAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGAATTGGAGGGTGGAAGGGCTGATCTGCCACACCAACCGCCAC  850

seq1  ACCACAGGGTCTCCAACGTGCCGTTAGAGCTGCCACATCCAGCAACCGAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGGTCTCCAACGTGCCGTTAGAGCTGCCACATCCAGCAACCGAG  900

seq1  AGACCCATTTGCAGGAAAACCACATTCGATATTTATCAGCTGGACAGTAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATTTGCAGGAAAACCACATTCGATATTTATCAGCTGGACAGTAT  950

seq1  CTCGTTTGCTGGAGGCATCCAACTGCCAAAAGGCCTGTGGGGAATAATTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTGCTGGAGGCATCCAACTGCCAAAAGGCCTGTGGGGAATAATTT  1000

seq1  TAATAAAGTGGGCAATTGTGTTTGGTTTTTTTTTTTTTAATAAGATATGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGTGGGCAATTGTGTTTGGTTTTTTTTTTTTTAATAAGATATGA  1050

seq1  AGATTCAGCTTGCAAGTCCAGAGCTGAAGATATTTGAGCCAAGACACCTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGCTTGCAAGTCCAGAGCTGAAGATATTTGAGCCAAGACACCTC  1100

seq1  CTGAACACTCAGCCCTGAGCTAAGCTGAAATTCCACATTTGGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTCAGCCCTGAGCTAAGCTGAAATTCCACATTTGGGAATTC  1148

seq1: chr5_113260802_113261892
seq2: B6Ng01-002K16.g_69_1161

seq1  GAATTCTTCTTAGCCACAATGAGGAATGAAGTCAGGCCACTTGCACAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTAGCCACAATGAGGAATGAAGTCAGGCCACTTGCACAAGA  50

seq1  GTAGCCGGCACTGGAAATAATCGCATTAGAAGACCCTGGGTCCATCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCGGCACTGGAAATAATCGCATTAGAAGACCCTGGGTCCATCTCAG  100

seq1  GAAGACAGAACCATTGCTTTCTCTTGTCTGTGGATCCTGGACTAGATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAACCATTGCTTTCTCTTGTCTGTGGATCCTGGACTAGATACA  150

seq1  GACATAAGATCATGTGTGTGCTGATTGCAAGACAGTAGTAGACTCAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAGATCATGTGTGTGCTGATTGCAAGACAGTAGTAGACTCAAATC  200

seq1  CCTCTGGGAGCAAAGAGGGATAATGGTGGGGGAGGGGCAGCAAGGTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGAGCAAAGAGGGATAATGGTGGGGGAGGGGCAGCAAGGTAAAA  250

seq1  AAAAAAGAATGAGAACAGACCCAAAGCTCGTTACATGCTACCCCGTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATGAGAACAGACCCAAAGCTCGTTACATGCTACCCCGTGGAC  300

seq1  ACTATCCAACCCATCAGATAGAGCGATCCACAAGGGAGCTGGGAAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAACCCATCAGATAGAGCGATCCACAAGGGAGCTGGGAAAGAGG  350

seq1  CTCCACATAATCCTTCGCCATAATTCTTAGTAATACATCAATGTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATAATCCTTCGCCATAATTCTTAGTAATACATCAATGTTTCTTT  400

seq1  CTTCAGAAAGAGAAAAGGCAGCTGCTGTTCCAGTGGGTGGAGCTGCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAAGAGAAAAGGCAGCTGCTGTTCCAGTGGGTGGAGCTGCAAAC  450

seq1  CCGGGGCCTGGTACCTGCCCAATGCCACCAGCTCTATCTCCCCATGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGCCTGGTACCTGCCCAATGCCACCAGCTCTATCTCCCCATGAAGC  500

seq1  ATTCAGAGACCTTTCTTCACTATCAAAAAGCTCAGGGTCCACTTCAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGACCTTTCTTCACTATCAAAAAGCTCAGGGTCCACTTCAGCTA  550

seq1  CAGCCTTAAAGGTTTGTGATCCAGACTGATGCCTGCTGGCTCCTGGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTAAAGGTTTGTGATCCAGACTGATGCCTGCTGGCTCCTGGGAGC  600

seq1  CTGAGATGCTAGGATGAACTAAAAGCATGAGCCCATGGCAGGATCAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCTAGGATGAACTAAAAGCATGAGCCCATGGCAGGATCAATAG  650

seq1  AGGCATAGCACACAGTGTGATCAGAGCAAGGACTGACTGGGGTGTAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGCACACAGTGTGATCAGAGCAAGGACTGACTGGGGTGTAGAGT  700

seq1  ATCAGCACTAAGAGCCATGAGCCTAGGGTGGAGAAGGCAGGTGCTTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACTAAGAGCCATGAGCCTAGGGTGGAGAAGGCAGGTGCTTCCAA  750

seq1  CCCCAGCCCCAACCTGACGTGTGGGATCCGTCTACTGCGGTAGATGGT-G  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCCAGCCCCAACCTGACGTGTGGGATCCGTCTACTGCGGTAGATGGTGG  800

seq1  GATGGAGATCTCTGCTTTTCCACTTCTCATATGACCTTGGGCAAGTTCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGATCTCTGCTTTTCCACTTCTCATATGACCTTGGGCAAGTTCCA  850

seq1  TGTCCTCTCCAGACTATACCTTGAGGAACACACAGC-TTTCAGAAAGC-C  897
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  TGTCCTCTCCAGACTATACCTTGAGGAACACACAGCTTTTCAGAAAGCTC  900

seq1  CTTGAGTCTGTCGATGGAGTCCTAGAGACC-CG-TTCACAGTCCTGGTGG  945
       ||||||||||||||||||||||||||||| || ||||||||| ||||||
seq2  TTTGAGTCTGTCGATGGAGTCCTAGAGACCTCGTTTCACAGTCTTGGTGG  950

seq1  GCTCACTGAGGCCCT-GACTACAAAGCCTCACCCTAAGATCAAGCGGGG-  993
      ||||||||||||||| |||||||||||||||| || ||||||||||||| 
seq2  GCTCACTGAGGCCCTGGACTACAAAGCCTCACTCT-AGATCAAGCGGGGA  999

seq1  ATTGTTCTTTCGGTCACCAGGATTAGACTCTGGAGGTGACCAGCTGCAAC  1043
      ||||||||||| ||||| || |||||||||||||||||  ||||||| ||
seq2  ATTGTTCTTTC-GTCACAAGAATTAGACTCTGGAGGTGGACAGCTGC-AC  1047

seq1  AAGGTCAAAATGGTCTTTTAGATTTGTTTAGGTGGTGGTTTTTGTTTT  1091
      ||| || ||||||||||||||||||| ||||  |||||||||||||||
seq2  AAGTTC-AAATGGTCTTTTAGATTTG-TTAGTGGGTGGTTTTTGTTTT  1093