BAC Information

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BAC

Clone NameB6Ng01-002M21
Chromosome5 (Build37)
Map Location 21,646,500 - 21,750,759
singlet/doubletdoublet
Overlap geneReln
Upstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002M21.bB6Ng01-002M21.g
ACCDH840718DH840719
length1,2201,066
definitionDH840718|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M21, 5' end.DH840719|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,646,500 - 21,647,726)(21,749,682 - 21,750,759)
sequence
gaattctctctctacctaatggcaaaactatggaatgtttctctaatcta
agaaaccctttctcctttctcctatttccccagcttggaaaagttgaaca
taagaatttaacagacaccatcatgcactatgtgaacgaactgttcacat
caaaatatattctaccacgaacaacaggattaaaacacattttaatggaa
atgcatataattttcaaagatatggtgagactggaattcattaaaccttt
tctcagactatttattgcatgcttaggttccacaggagtctcttttatta
ctggagtgcacagatgatacccttaaagagggcctgcatcatcattgaat
ctcatcaccctgcatttgataaacaacaaaacaggactagaatttgggtt
gccacagtgggccctgaacctggtgagcaagagacaagacttccagttct
gtaaaaggaatgtatgttgcaaagaatgcttgccatttttactggcaggg
tttattttgaaattctgtagtgatttttcttaaagttattttttcatttg
taaggtaaagagatttggtttcactaataaaatcctataaaaataaggca
atgaaatggatttcatggaaaaacaccgagttaattacaagaactggtgg
gtgtaagaatgaagttctatgtggcgcctttggctgctaaatatccttgg
ataactaatcaaaacctgttttaggcttacactttcactccctcctctcc
actcccccttctatcttttgctatcaaaaataaaaacaatcagtaaatat
gaaaggctatccaacaaaaccatgcaggcttgagctgtgattatgagaga
tgaagacactctttgattgggttttgctttcactgtaatcaattctgagg
cacattctaaactggagactgcctgcctgcctgtctgcctgcctgccttt
ctttaaaataaagcaaaaaacaaaagtaatatttagctgttgatgtttca
tctgaacaaaaattataatagtgtacattgggtgtagtgcaacttctaaa
ggtataattaatatcattattctgacttaaaatttttaagcacgaataat
ttcagcttagttcagcatgcaggagaagtcagactaccacgtgcatcagg
aaacagaagactcatgactgattgaactggaatctttgtaacaagaaaga
gaaggggtactaatgagaga
gaattcaactatgcttgagagagacaggagaataaaatgaagtagtgtga
gtacacacaaaccccacacgcacacaccgtacataccacaccacacacat
acatacaaaccccacccaactgtctggaggagtaaactctgtagcaaaca
cattacatttcaataaagttatttaagaacaaaaagagatccagtcagat
ggccagtgagcaaagtacctggtaccaaggctgatgaccagagttcaatc
ccaggaacccctcagctagaggagagactgagtcttgcttaccgtggtat
acaggacacacacgtgcatgaataaataaaggtcaagatattttaaagac
aggcagtagaaacacggaggaaagacattttgaattttagggatgtctat
ggtatgttagcacctcagctttcattttagttgacatgtttggttgaatt
cagttcactgcatgttctgtaatattcgtaggaagttggccagtaatata
gatcagaagtagagtacaggccctgtccttgtaacatgacatgagatatt
tattcacagcactacatcatatggcccatgtttgcttggcattatctatt
gttggatctttgagcagttctagtttgttgtctttttttctgtaagtaaa
tggtatttataaagcagctagtaaatttatcaaaacaggctgttgaactg
cagcctccacttctggtccagtgaatattaggtgtaaccatctctgtctc
tagtggcagacactgagagcagagcttgaagatccagatttctaatgggg
aaaaaagccctgctctgcagtgtgtgccagtttctgtggtgtgagtcttc
ctattacggtcaaattgctgctgccaatgcgatgccactaattcagactt
ggagagagatgtgtgcttggccctcaggactggcctgccctacagcccgg
gggggggggctgattcataaagtgttacgagattatttggggggtggggg
caagataggtcacgggataactgcaaactgatggtcttactgattgattc
actggtctcccccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21646500_21647726
seq2: B6Ng01-002M21.b_51_1270

seq1  GAATTCTCTCTCTACCTAATGGCAAAACTATGGAATGTTTCTCTAATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTACCTAATGGCAAAACTATGGAATGTTTCTCTAATCTA  50

seq1  AGAAACCCTTTCTCCTTTCTCCTATTTCCCCAGCTTGGAAAAGTTGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTTTCTCCTTTCTCCTATTTCCCCAGCTTGGAAAAGTTGAACA  100

seq1  TAAGAATTTAACAGACACCATCATGCACTATGTGAACGAACTGTTCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTTAACAGACACCATCATGCACTATGTGAACGAACTGTTCACAT  150

seq1  CAAAATATATTCTACCACGAACAACAGGATTAAAACACATTTTAATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATTCTACCACGAACAACAGGATTAAAACACATTTTAATGGAA  200

seq1  ATGCATATAATTTTCAAAGATATGGTGAGACTGGAATTCATTAAACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAATTTTCAAAGATATGGTGAGACTGGAATTCATTAAACCTTT  250

seq1  TCTCAGACTATTTATTGCATGCTTAGGTTCCACAGGAGTCTCTTTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACTATTTATTGCATGCTTAGGTTCCACAGGAGTCTCTTTTATTA  300

seq1  CTGGAGTGCACAGATGATACCCTTAAAGAGGGCCTGCATCATCATTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGCACAGATGATACCCTTAAAGAGGGCCTGCATCATCATTGAAT  350

seq1  CTCATCACCCTGCATTTGATAAACAACAAAACAGGACTAGAATTTGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACCCTGCATTTGATAAACAACAAAACAGGACTAGAATTTGGGTT  400

seq1  GCCACAGTGGGCCCTGAACCTGGTGAGCAAGAGACAAGACTTCCAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTGGGCCCTGAACCTGGTGAGCAAGAGACAAGACTTCCAGTTCT  450

seq1  GTAAAAGGAATGTATGTTGCAAAGAATGCTTGCCATTTTTACTGGCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGGAATGTATGTTGCAAAGAATGCTTGCCATTTTTACTGGCAGGG  500

seq1  TTTATTTTGAAATTCTGTAGTGATTTTTCTTAAAGTTATTTTTTCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGAAATTCTGTAGTGATTTTTCTTAAAGTTATTTTTTCATTTG  550

seq1  TAAGGTAAAGAGATTTGGTTTCACTAATAAAATCCTATAAAAATAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAAAGAGATTTGGTTTCACTAATAAAATCCTATAAAAATAAGGCA  600

seq1  ATGAAATGGATTTCATGGAAAAACACCGAGTTAATTACAAGAACTGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGGATTTCATGGAAAAACACCGAGTTAATTACAAGAACTGGTGG  650

seq1  GTGTAAGAATGAAGTTCTATGTGGCGCCTTTGGCTGCTAAATATCCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGAATGAAGTTCTATGTGGCGCCTTTGGCTGCTAAATATCCTTGG  700

seq1  ATAACTAATCAAAACCTGTTTTAGGCTTACACTTTCACTCCCTCCTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAATCAAAACCTGTTTTAGGCTTACACTTTCACTCCCTCCTCTCC  750

seq1  ACTCCCCCTTCTATCTTTTGCTATCAAAAATAAAAACAATCAGTAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCCTTCTATCTTTTGCTATCAAAAATAAAAACAATCAGTAAATAT  800

seq1  G-AAGGCTATCCAACAAAACCATGCAGGCTTGAGCTGTGATTATGAGAGA  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTATCCAACAAAACCATGCAGGCTTGAGCTGTGATTATGAGAGA  850

seq1  TGAAGACACTCTTTGATTGGGTTTTGCTTTCACTGTAATCAATTCTGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACTCTTTGATTGGGTTTTGCTTTCACTGTAATCAATTCTGAGG  900

seq1  CACATTCTAAACTGGAGACTGCCTGCCTGCCTGTCTGCCTGCCTGCCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTAAACTGGAGACTGCCTGCCTGCCTGTCTGCCTGCCTGCCTTT  950

seq1  CTTTAAAATAAAGCAAAAAACAAAAGTAATATTTAGCTGTTGATGTTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTAAAATAAAGCAAAAAACAAAAGTAATATTTAGCTGTTGATG-TTTC  999

seq1  ATCTTGAAACAAAAAATTTATATAGTGTACATTTGGGTGTAGTGCAAACT  1049
      ||||   |||||||| | || |||||||||| ||||||||||||| ||||
seq2  ATCT--GAACAAAAATTATA-ATAGTGTACA-TTGGGTGTAGTGC-AACT  1044

seq1  TCTAAAGGTATAATT-ATATCATTTATTCTGACTTAAAAATTTTTAGGCA  1098
      ||||||||||||||| |||||| |||||||||||| |||||||||| |||
seq2  TCTAAAGGTATAATTAATATCA-TTATTCTGACTT-AAAATTTTTAAGCA  1092

seq1  CG-ATATATTCAGCCTAGGTCAGCATGCAGGAG-AGTCAGGACTACCACG  1146
      || |||  |||||| ||| |||||||||||||| ||||| ||||||||||
seq2  CGAATAATTTCAGCTTAGTTCAGCATGCAGGAGAAGTCA-GACTACCACG  1141

seq1  TGCATCAGGAGACAG-AGACCCATGCACTGTAGTG-ACTGAGAGGCCTTT  1194
      |||||||||| |||| |||| |||| |||| | || |||| ||  |  ||
seq2  TGCATCAGGAAACAGAAGACTCATG-ACTG-ATTGAACTG-GAATC--TT  1186

seq1  GGGAACAAGAAAGAG-AGGGGTACTAATGAGAGA  1227
       | |||||||||||| ||||||||||||||||||
seq2  TGTAACAAGAAAGAGAAGGGGTACTAATGAGAGA  1220

seq1: chr5_21749682_21750759
seq2: B6Ng01-002M21.g_68_1133 (reverse)

seq1  GAGGGGGGAGACACAGAGAAATAAAATCAGTAAAGACAACCAGTTTTGCA  50
      |||||||||||| ||| |||    ||||||| ||||| | ||| ||||||
seq2  GAGGGGGGAGAC-CAGTGAA--TCAATCAGT-AAGACCATCAG-TTTGCA  45

seq1  GTTTATTCCGTGACCTATACTTTGCCCCCCACCCCCAAATAAATCTTCGT  100
      | |||| |||||||||||   ||||||||  ||||||||| |||| ||||
seq2  G-TTATCCCGTGACCTAT--CTTGCCCCCACCCCCCAAAT-AATC-TCGT  90

seq1  AACAACTTTATGAATCAGCCCCCCCCCCCCGGGCTGTAGGGCAGGCCAGT  150
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAC-ACTTTATGAATCAG-CCCCCCCCCCCGGGCTGTAGGGCAGGCCAGT  138

seq1  CCTGAGGGCCAAGCACACATCTCTCTCCAAGTCTGAATTAGTGGCATCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGCCAAGCACACATCTCTCTCCAAGTCTGAATTAGTGGCATCGC  188

seq1  ATTGGCAGCAGCAATTTGACCGTAATAGGAAGACTCACACCACAGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAGCAGCAATTTGACCGTAATAGGAAGACTCACACCACAGAAACT  238

seq1  GGCACACACTGCAGAGCAGGGCTTTTTTCCCCATTAGAAATCTGGATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACTGCAGAGCAGGGCTTTTTTCCCCATTAGAAATCTGGATCTT  288

seq1  CAAGCTCTGCTCTCAGTGTCTGCCACTAGAGACAGAGATGGTTACACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTGCTCTCAGTGTCTGCCACTAGAGACAGAGATGGTTACACCTA  338

seq1  ATATTCACTGGACCAGAAGTGGAGGCTGCAGTTCAACAGCCTGTTTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACTGGACCAGAAGTGGAGGCTGCAGTTCAACAGCCTGTTTTGAT  388

seq1  AAATTTACTAGCTGCTTTATAAATACCATTTACTTACAGAAAAAAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTAGCTGCTTTATAAATACCATTTACTTACAGAAAAAAAGACA  438

seq1  ACAAACTAGAACTGCTCAAAGATCCAACAATAGATAATGCCAAGCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTAGAACTGCTCAAAGATCCAACAATAGATAATGCCAAGCAAACA  488

seq1  TGGGCCATATGATGTAGTGCTGTGAATAAATATCTCATGTCATGTTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATATGATGTAGTGCTGTGAATAAATATCTCATGTCATGTTACAA  538

seq1  GGACAGGGCCTGTACTCTACTTCTGATCTATATTACTGGCCAACTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGCCTGTACTCTACTTCTGATCTATATTACTGGCCAACTTCCTA  588

seq1  CGAATATTACAGAACATGCAGTGAACTGAATTCAACCAAACATGTCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATATTACAGAACATGCAGTGAACTGAATTCAACCAAACATGTCAACT  638

seq1  AAAATGAAAGCTGAGGTGCTAACATACCATAGACATCCCTAAAATTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGCTGAGGTGCTAACATACCATAGACATCCCTAAAATTCAAA  688

seq1  ATGTCTTTCCTCCGTGTTTCTACTGCCTGTCTTTAAAATATCTTGACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTCCTCCGTGTTTCTACTGCCTGTCTTTAAAATATCTTGACCTT  738

seq1  TATTTATTCATGCACGTGTGTGTCCTGTATACCACGGTAAGCAAGACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTCATGCACGTGTGTGTCCTGTATACCACGGTAAGCAAGACTCA  788

seq1  GTCTCTCCTCTAGCTGAGGGGTTCCTGGGATTGAACTCTGGTCATCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTCTAGCTGAGGGGTTCCTGGGATTGAACTCTGGTCATCAGCC  838

seq1  TTGGTACCAGGTACTTTGCTCACTGGCCATCTGACTGGATCTCTTTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACCAGGTACTTTGCTCACTGGCCATCTGACTGGATCTCTTTTTGT  888

seq1  TCTTAAATAACTTTATTGAAATGTAATGTGTTTGCTACAGAGTTTACTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATAACTTTATTGAAATGTAATGTGTTTGCTACAGAGTTTACTCC  938

seq1  TCCAGACAGTTGGGTGGGGTTTGTATGTATGTGTGTGGTGTGGTATGTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACAGTTGGGTGGGGTTTGTATGTATGTGTGTGGTGTGGTATGTAC  988

seq1  GGTGTGTGCGTGTGGGGTTTGTGTGTACTCACACTACTTCATTTTATTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCGTGTGGGGTTTGTGTGTACTCACACTACTTCATTTTATTCT  1038

seq1  CCTGTCTCTCTCAAGCATAGTTGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  CCTGTCTCTCTCAAGCATAGTTGAATTC  1066