BAC Information

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BAC

Clone NameB6Ng01-002N13
Chromosome5 (Build37)
Map Location 87,716,916 - 87,853,103
singlet/doubletdoublet
Overlap geneLOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38
Upstream geneTmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37
Downstream geneUgt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002N13.bB6Ng01-002N13.g
ACCDH840750DH840751
length1,0951,108
definitionDH840750|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N13, 5' end.DH840751|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,716,916 - 87,718,014)(87,851,973 - 87,853,103)
sequence
gaattctattgtctaaatttgcattttattgctgtgaagagataccatga
tcaaggcaactcttataaagtaaaatatttaattggggctgacctacaga
atcaggcctttaataatttatcatcatggaaagaagcatggaggcatgca
agcagacatagtgttagagcaggagctgagagtacttcattttgatccaa
aggctaccagagcagactggaattccactctaggcagagcttaaagctag
aaacctccagcctatccccacagtgtttcaccctatccaacaaggccaca
tttactcttaaaaggccataactcctaatagtgccatcctgtgttggtca
atcattcaaacacatgagtctatgggggccaaacctattcaaaccaccac
agctatagaagtcatttcccagctgttagttctttaatccacagataaaa
taagttacactgatgaatgtggcttgtatcatcagggattttatgcagtc
tcacttgacttttgataacactcaggtaagagagaagcagaagaaaacag
cagaagagggagaaaacttcagtgagaagggtattaagtggccgaagtgg
tgttcagccccagtttcctacacagtggcatggctagtccactacttctc
aatgtataattaccatactttgatctcagctggcaaaaaaatgaagtgaa
aagaataggaagcaatcatgaagtcaacacaaaaagccctttttaaaacg
taaatgaagataaaccaaaatacattaatataagtcatttggtgcccccc
ccccccacatttaccaaatgcttttaatgttcacaaaattatagtaattt
atgtgcacctttagctacgcacatatacaagaatattatatagttatttc
ttacgtcatccaccagtgttgttcctttggatagctcatttgctcactga
agagctgattttcctaataaggagcacagccaactagtactatggtggtg
gtcacactgccctgctaattgaagctgctccttggagggatggtctcttc
ttggaatgagaatggtctaattgctgattgtaatcagagttgtct
gaattcagtcattggatgaacataaaaataatactggatgaactggtaca
gagaggccatgaagtcactgttctgagaccttcagcttactatgttcttg
atcccaaaaaatcacctggccttaagtttgaaacttttcctacatctgtc
agtaaagacaatctggaaaattttttcattaagtttgtggatgtgtggac
ttatgaaatgccaagggatacatgtttgtcatattctcctttactgcaaa
atatgattgatgaattttctgattattttctaagtctttgtaaagatgtt
gtttcaaacaaagagctcatgacaaagctacaggaatccaagtttgatgt
gcttttgtcagatcctgttgcttcctgtggggagctcatagctgaactgc
tccagattccttttctgtacagtatccgcttctctccaggctaccaaatt
gaaaagtccagcgggagatttctactccctccctcttatgtacctgtaat
tctgtcaggattaggtggacaaatgacattcatagagagagtaaaaaata
tgatatgcaggctttattttgacttttggttccagatgtttaatgataag
aaatgggactcattttacagtgaatatttgggtaagttaaatttttttct
aagttgcttgaatacctaagtttcacaagtatggaaatctttatgtccat
gaaatagaaagtgtaagagtcttttataagtgatcaaatgtataatgata
taaactatcaaactcacaagctcttgtaaaaactcatatatttgatcaaa
taggagaaaggtatcggtatcagtgctgatagaagacttttgggttagct
atacaattacatagagatgaaattagatggtccctaagtgattctttact
catttaatgacatatttataatatatatatatggaaggagttatttctct
gctcggctggtctttattaaaatgaaaatgtagggtcagaaacatgccca
agagtcagattgtttctgtatagtatagtacagagcattcttcaggcacc
actcaagtacagtggctcaatgctgtatctcagctcagaactgctgcata
tcatctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87716916_87718014
seq2: B6Ng01-002N13.b_48_1142

seq1  GAATTCTATTGTCTAAATTTGCATTTTATTGCTGTGAAGAGATACCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGTCTAAATTTGCATTTTATTGCTGTGAAGAGATACCATGA  50

seq1  TCAAGGCAACTCTTATAAAGTAAAATATTTAATTGGGGCTGACCTACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCAACTCTTATAAAGTAAAATATTTAATTGGGGCTGACCTACAGA  100

seq1  ATCAGGCCTTTAATAATTTATCATCATGGAAAGAAGCATGGAGGCATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCCTTTAATAATTTATCATCATGGAAAGAAGCATGGAGGCATGCA  150

seq1  AGCAGACATAGTGTTAGAGCAGGAGCTGAGAGTACTTCATTTTGATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACATAGTGTTAGAGCAGGAGCTGAGAGTACTTCATTTTGATCCAA  200

seq1  AGGCTACCAGAGCAGACTGGAATTCCACTCTAGGCAGAGCTTAAAGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACCAGAGCAGACTGGAATTCCACTCTAGGCAGAGCTTAAAGCTAG  250

seq1  AAACCTCCAGCCTATCCCCACAGTGTTTCACCCTATCCAACAAGGCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCAGCCTATCCCCACAGTGTTTCACCCTATCCAACAAGGCCACA  300

seq1  TTTACTCTTAAAAGGCCATAACTCCTAATAGTGCCATCCTGTGTTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTTAAAAGGCCATAACTCCTAATAGTGCCATCCTGTGTTGGTCA  350

seq1  ATCATTCAAACACATGAGTCTATGGGGGCCAAACCTATTCAAACCACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCAAACACATGAGTCTATGGGGGCCAAACCTATTCAAACCACCAC  400

seq1  AGCTATAGAAGTCATTTCCCAGCTGTTAGTTCTTTAATCCACAGATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGAAGTCATTTCCCAGCTGTTAGTTCTTTAATCCACAGATAAAA  450

seq1  TAAGTTACACTGATGAATGTGGCTTGTATCATCAGGGATTTTATGCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACACTGATGAATGTGGCTTGTATCATCAGGGATTTTATGCAGTC  500

seq1  TCACTTGACTTTTGATAACACTCAGGTAAGAGAGAAGCAGAAGAAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGACTTTTGATAACACTCAGGTAAGAGAGAAGCAGAAGAAAACAG  550

seq1  CAGAAGAGGGAGAAAACTTCAGTGAGAAGGGTATTAAGTGGCCGAAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGAGAAAACTTCAGTGAGAAGGGTATTAAGTGGCCGAAGTGG  600

seq1  TGTTCAGCCCCAGTTTCCTACACAGTGGCATGGCTAGTCCACTACTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCCCCAGTTTCCTACACAGTGGCATGGCTAGTCCACTACTTCTC  650

seq1  AATGTATAATTACCATACTTTGATCTCAGCTGGCAAAAAAATGAAGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAATTACCATACTTTGATCTCAGCTGGCAAAAAAATGAAGTGAA  700

seq1  AAGAATAGGAAGCAATCATGAAGTCAACACAAAAAGCCCTTTTTAAAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGGAAGCAATCATGAAGTCAACACAAAAAGCCCTTTTTAAAACG  750

seq1  TAAATGAAGATAAACCAAAATACATTAATATAAGTCATTTGGTGATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||      
seq2  TAAATGAAGATAAACCAAAATACATTAATATAAGTCATTTGGTGCCCCCC  800

seq1  TTGGTAACATTTACCAAATGCTTTTAATGTTCACAAAATTATAGTAATTT  850
            ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACATTTACCAAATGCTTTTAATGTTCACAAAATTATAGTAATTT  850

seq1  ATGTGCACCTTTAGCTACGCACATATACAAGAATATTATATAGTTATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACCTTTAGCTACGCACATATACAAGAATATTATATAGTTATTTC  900

seq1  TTACGTCATCCACCAGTGTTGTTCCTTTGGATAGCTCATTTGCTCACTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTACGTCATCCACCAGTGTTGTTCCTTTGGATAGCTCATTTGCTCAC-TG  949

seq1  AAGAGCTGATTTTCCTAATAA-GAGCACAGCCAACTAGTACTTATTGGTG  999
      ||||||||||||||||||||| ||||||||||||||||||||   |||||
seq2  AAGAGCTGATTTTCCTAATAAGGAGCACAGCCAACTAGTACT--ATGGTG  997

seq1  GTGGTCACACTGCCCTGCTAATTTGAGCTGCCCCTTGGAGGGATGGTCTC  1049
      |||||||||||||||||||||||  |||||| ||||||||||||||||||
seq2  GTGGTCACACTGCCCTGCTAATTGAAGCTGCTCCTTGGAGGGATGGTCTC  1047

seq1  TTCTTGGAATGAGAATGGGCCTAATTGCTGATTGTAAATCAGAGTTGTCT  1099
      |||||||||||||||| || ||||||||||||||| ||||||||||||||
seq2  TTCTTGGAATGAGAAT-GGTCTAATTGCTGATTGT-AATCAGAGTTGTCT  1095

seq1: chr5_87851973_87853103
seq2: B6Ng01-002N13.g_68_1175 (reverse)

seq1  GGAGATGATAAATGGCAGCAGTTTCCTTGAAGCTGAAGATACAGGCAATT  50
      ||||||||||    |||||||||  ||   ||||| ||||||| |||   
seq2  GGAGATGATA---TGCAGCAGTT--CT--GAGCTG-AGATACA-GCA---  38

seq1  TTGAGCCACTGTACATGAGTGGTGCCTGGAAGAGTGCTCTGGTACTATAC  100
      |||||||||||||| |||||||||||| ||||| |||||| |||||||||
seq2  TTGAGCCACTGTACTTGAGTGGTGCCT-GAAGAATGCTCT-GTACTATAC  86

seq1  TATACAGAAACAATCTTAACTCTTTGGGCATGTTTTCTGACCCTACATTT  150
      ||||||||||||||| | |||| ||||||||| |||||||||||||||||
seq2  TATACAGAAACAATC-TGACTC-TTGGGCATG-TTTCTGACCCTACATTT  133

seq1  TCATTTTAAATAAAGACCCAGGCCGAGGCAAGAGAAAATAACTCCTTCCA  200
      ||||||| ||||||||||   ||||||   |||| |||||||||||||||
seq2  TCATTTT-AATAAAGACC--AGCCGAG--CAGAG-AAATAACTCCTTCCA  177

seq1  TATATATATATTATAAAATATGTCATTAAATGAGTAAAGAATCACTTAGG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATATATATATTAT-AAATATGTCATTAAATGAGTAAAGAATCACTTAGG  226

seq1  GACCATCTAATTTCATCTCTATGTAATTGTATAGCTAACCAAAATGTCTT  300
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  GACCATCTAATTTCATCTCTATGTAATTGTATAGCTAACCCAAAAGTCTT  276

seq1  CTATCAGCACTGATACCGATACC-TTCTCCTATTTGATCAAATATATGAG  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTATCAGCACTGATACCGATACCTTTCTCCTATTTGATCAAATATATGAG  326

seq1  TTTTTACAAGAGCTTGTGAGTTTGATAGTTTATATCATTATACATTTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAAGAGCTTGTGAGTTTGATAGTTTATATCATTATACATTTGAT  376

seq1  CACTTATAAAAGACTCTTACACTTTCTATTTCATGGACATAAAGATTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATAAAAGACTCTTACACTTTCTATTTCATGGACATAAAGATTTCC  426

seq1  ATACTTGTGAAACTTAGGTATTCAAGCAACTTAGAAAAAAATTTAACTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTGAAACTTAGGTATTCAAGCAACTTAGAAAAAAATTTAACTTA  476

seq1  CCCAAATATTCACTGTAAAATGAGTCCCATTTCTTATCATTAAACATCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATATTCACTGTAAAATGAGTCCCATTTCTTATCATTAAACATCTG  526

seq1  GAACCAAAAGTCAAAATAAAGCCTGCATATCATATTTTTTACTCTCTCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAAGTCAAAATAAAGCCTGCATATCATATTTTTTACTCTCTCTA  576

seq1  TGAATGTCATTTGTCCACCTAATCCTGACAGAATTACAGGTACATAAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCATTTGTCCACCTAATCCTGACAGAATTACAGGTACATAAGAG  626

seq1  GGAGGGAGTAGAAATCTCCCGCTGGACTTTTCAATTTGGTAGCCTGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGTAGAAATCTCCCGCTGGACTTTTCAATTTGGTAGCCTGGAGA  676

seq1  GAAGCGGATACTGTACAGAAAAGGAATCTGGAGCAGTTCAGCTATGAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGGATACTGTACAGAAAAGGAATCTGGAGCAGTTCAGCTATGAGCT  726

seq1  CCCCACAGGAAGCAACAGGATCTGACAAAAGCACATCAAACTTGGATTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGGAAGCAACAGGATCTGACAAAAGCACATCAAACTTGGATTCC  776

seq1  TGTAGCTTTGTCATGAGCTCTTTGTTTGAAACAACATCTTTACAAAGACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTTGTCATGAGCTCTTTGTTTGAAACAACATCTTTACAAAGACT  826

seq1  TAGAAAATAATCAGAAAATTCATCAATCATATTTTGCAGTAAAGGAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATAATCAGAAAATTCATCAATCATATTTTGCAGTAAAGGAGAAT  876

seq1  ATGACAAACATGTATCCCTTGGCATTTCATAAGTCCACACATCCACAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAACATGTATCCCTTGGCATTTCATAAGTCCACACATCCACAAAC  926

seq1  TTAATGAAAAAATTTTCCAGATTGTCTTTACTGACAGATGTAGGAAAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAAAAATTTTCCAGATTGTCTTTACTGACAGATGTAGGAAAAGT  976

seq1  TTCAAACTTAAGGCCAGGTGATTTTTTGGGATCAAGAACATAGTAAGCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTTAAGGCCAGGTGATTTTTTGGGATCAAGAACATAGTAAGCTG  1026

seq1  AAGGTCTCAGAACAGTGACTTCATGGCCTCTCTGTACCAGTTCATCCAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCAGAACAGTGACTTCATGGCCTCTCTGTACCAGTTCATCCAGT  1076

seq1  ATTATTTTTATGTTCATCCAATGACTGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  ATTATTTTTATGTTCATCCAATGACTGAATTC  1108