BAC Information

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BAC

Clone NameB6Ng01-002N20
Chromosome5 (Build37)10 (Build37)
Map Location 110,046,968 - 110,047,57021,708,515 - 21,709,588
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173
Downstream geneLOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002N20.bB6Ng01-002N20.g
ACCDH840762DH840763
length1,0191,070
definitionDH840762|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N20, 5' end.DH840763|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,046,968 - 110,047,570)(21,708,515 - 21,709,588)
sequence
gaattctttgattagatagatctgtacctcattttctaattggataattt
tgtttgttggtgtctgttcttgagttcttcatatattttggctattagta
ctctgtcagatgtagagtgtgtaaaaatctttcctcattctgtaggctgc
tattttgtcctgttgacaatgacttgtgtgctgcagaagattttcagttt
catgaggtcccagttcttaattgttgatctcagtacctgagctgttggtg
ttctgttcagaaagttgtttcttatgggaggactactgatttttttcaat
ttatcttgtatccagccacttcactgaatgtgtttactagctgtaggggt
gccatggtagagtgcttggggtcacttatgtatactatcttatcatctgc
aaatagagatattttggcttcttcctttccaattttcatctcctttatct
ccttcagtctttttattgctctagctagaacttcaagttctattgacaga
tatatagagagtgagcagccttgatttattcctgatttcagtgaaattgc
tttgaatttctccccatttaatttgatgttgactatcagcctgctataaa
ttgccttcattatgttttagtatgtcccttttatccttgatttctccaac
actttcagcatgaaggggctttggacttttttcaaagacttcttcagtat
ctaataagatgaccatgtggttttttttgcccttaacttcatttatgtga
tgtgttatattggcagacttttatatgttgaaacatccctacatctctgg
gatgaagcttacttgactatggtggatgatgtttttgatgtattcttgaa
ataaatttgaaagtatttttattgagtttttttgcatcaatgttcacaac
ggaaaattggtctgtaaagatactttgcatcatttaaaatgtttaataag
aactttatttattatattatagtgtactacagattttttccaactgaaaa
atatcaattaaagagagac
gaattcctaccacccaggctgttgaggatggagatatgcaaatggttaat
cccaacacacctgtgtactaactgggttcgaggcctttgttttctctaag
tagctctgactgtctgagctggagtctacctgtagaccaggctggcctgg
gcagacagaacttatagggggtctgcctgcctctgtcctcggagtgctgg
gttaaaagtgtgggccaccttgcctccttgtttgaggctttttatatgaa
gttgtaaggtgtgtgtatcaccaacagatatagtcatgttttccatatga
aagtccatcttgaaagaggcatataatttctttatgttcattatttttca
caatttatgggatgaaaatatcagtagccccactctacagagatgacaag
aaattcttgcagatagcaggcctcacttagagctaagtgtttgaccaggc
attcgttcaccatctgtattcactgtgtctcctgagcttgtgtgagggac
ataaaaaatatggtcaagatgaaagaccattaatgtacaagaaaagacac
caagcaattctccagcccctgccccccactactactatcacgttgtcttt
tctttctgtcatctgtgggcagggtttgtaggacactgtagcctaggggt
ggcctcaactgctctagcttcctcatagaacaattacagggtcaggatgg
gaaagatttcaggagagacttggaatgtgagccaaggaaggcttttagct
tttaccctagtttgacagatctgtcagaaattgggagttgttttcttttc
tatgagcactttgtaaaatagggagggttgaaagagagcgccttaaccgt
ctccatcttggatctattttcataatctcaagtcatggatctgcaaagaa
ataccaggttctgtggttaatgatgatcagacaaggatttgagatttctt
ggaatgtgggcttcatgagtagatcaccctgagcatggagctggaggagg
aagagtggggcttcttcatctagtcactgtactggattagcttgtaagta
atggtaagggacttttagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110046968_110047570
seq2: B6Ng01-002N20.b_465_1066

seq1  CTTCTTCCTTTCCAATTTTCATCTCCTTTATCTCCTTTAGTTTGCTTATT  50
      ||||||||||||||||||||||||||||||||||||| ||| |  |||||
seq2  CTTCTTCCTTTCCAATTTTCATCTCCTTTATCTCCTTCAGTCTTTTTATT  50

seq1  GCTCCAGCTAGAACTTCAAATTCTATTTGAACAGATATATAGAGAGTGAG  100
      |||| |||||||||||||| |||||||   ||||||||||||||||||||
seq2  GCTCTAGCTAGAACTTCAAGTTCTATT--GACAGATATATAGAGAGTGAG  98

seq1  TAGCCTTGATTTATTCCTGATTTCAGTGAAATTGCTTTGAGTTTCTCCCC  150
       ||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CAGCCTTGATTTATTCCTGATTTCAGTGAAATTGCTTTGAATTTCT-CCC  147

seq1  CATTTAATTTGATGTTGACTATCAGCTTGCTATAAATTGCTTTCATTATG  200
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  CATTTAATTTGATGTTGACTATCAGCCTGCTATAAATTGCCTTCATTATG  197

seq1  TTTTAGTATGTCCCTTTTATCCTTGATTTCTCCAACACTTTTAGTATGAA  250
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TTTTAGTATGTCCCTTTTATCCTTGATTTCTCCAACACTTTCAGCATGAA  247

seq1  GGGGCTTTGGA-TTTTGTCAAAGACTTCTTCAGTACCTAATAAGATGACC  299
      ||||||||||| |||| |||||||||||||||||| ||||||||||||||
seq2  GGGGCTTTGGACTTTTTTCAAAGACTTCTTCAGTATCTAATAAGATGACC  297

seq1  ATGTGG-GTTTTTTGCCCTTAACTTCATTTATGTGATGGGTTATATTAGC  348
      ||||||  |||||||||||||||||||||||||||||| |||||||| ||
seq2  ATGTGGTTTTTTTTGCCCTTAACTTCATTTATGTGATGTGTTATATTGGC  347

seq1  AGATTTTCATATGTTGAAATATCCCTACATCTCTGGGATGAAGCTTACTT  398
      ||| ||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  AGACTTTTATATGTTGAAACATCCCTACATCTCTGGGATGAAGCTTACTT  397

seq1  GACCATGATGGATGATGTTTTTGATGTATTCTTGAAATCAGTTTGAAAGT  448
      ||| ||| |||||||||||||||||||||||||||||| | |||||||||
seq2  GACTATGGTGGATGATGTTTTTGATGTATTCTTGAAATAAATTTGAAAGT  447

seq1  A-TTTTATTGAGTATTTTTACATCAATGTTCATGA-GGAAATTTGGTCTA  496
      | ||||||||||| ||||| ||||||||||||  | ||||| ||||||| 
seq2  ATTTTTATTGAGTTTTTTTGCATCAATGTTCACAACGGAAAATTGGTCTG  497

seq1  TAAAGATACTTTGTATCATTTAAA------AATAAGAACTTTATTTTATT  540
      ||||||||||||| ||||||||||      ||||||||||||| ||||||
seq2  TAAAGATACTTTGCATCATTTAAAATGTTTAATAAGAACTTTA-TTTATT  546

seq1  GTATTTATAGTTGTCCTAACAGATTTATTTCTAACTGAAAAATATCAAAA  590
       || |||||| ||| || |||||||| |||| ||||||||||||||||  
seq2  ATA-TTATAG-TGTACT-ACAGATTT-TTTCCAACTGAAAAATATCAA--  590

seq1  TATAAAGAGAGAC  603
        |||||||||||
seq2  -TTAAAGAGAGAC  602

seq1: chr10_21708515_21709588
seq2: B6Ng01-002N20.g_69_1138

seq1  GAATTCCTACCACCCAGGCTGTTGAGGATGGAGATATGCAAATGGTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCACCCAGGCTGTTGAGGATGGAGATATGCAAATGGTTAAT  50

seq1  CCCAACACACCTGTGTACTAACTGGGTTCGAGGCCTTTGTTTTCTCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACACCTGTGTACTAACTGGGTTCGAGGCCTTTGTTTTCTCTAAG  100

seq1  TAGCTCTGACTGTCTGAGCTGGAGTCTACCTGTAGACCAGGCTGGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGACTGTCTGAGCTGGAGTCTACCTGTAGACCAGGCTGGCCTGG  150

seq1  GCAGACAGAACTTATAGGGGGTCTGCCTGCCTCTGTCCTCGGAGTGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGAACTTATAGGGGGTCTGCCTGCCTCTGTCCTCGGAGTGCTGG  200

seq1  GTTAAAAGTGTGGGCCACCTTGCCTCCTTGTTTGAGGCTTTTTATATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGTGTGGGCCACCTTGCCTCCTTGTTTGAGGCTTTTTATATGAA  250

seq1  GTTGTAAGGTGTGTGTATCACCAACAGATATAGTCATGTTTTCCATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGGTGTGTGTATCACCAACAGATATAGTCATGTTTTCCATATGA  300

seq1  AAGTCCATCTTGAAAGAGGCATATAATTTCTTTATGTTCATTATTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATCTTGAAAGAGGCATATAATTTCTTTATGTTCATTATTTTTCA  350

seq1  CAATTTATGGGATGAAAATATCAGTAGCCCCACTCTACAGAGATGACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATGGGATGAAAATATCAGTAGCCCCACTCTACAGAGATGACAAG  400

seq1  AAATTCTTGCAGATAGCAGGCCTCACTTAGAGCTAAGTGTTTGACCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGCAGATAGCAGGCCTCACTTAGAGCTAAGTGTTTGACCAGGC  450

seq1  ATTCGTTCACCATCTGTATTCACTGTGTCTCCTGAGCTTGTGTGAGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCACCATCTGTATTCACTGTGTCTCCTGAGCTTGTGTGAGGGAC  500

seq1  ATAAAAAATATGGTCAAGATGAAAGACCATTAATGTACAAGAAAAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATATGGTCAAGATGAAAGACCATTAATGTACAAGAAAAGACAC  550

seq1  CAAGCAATTCTCCAGCCCCTGCCCCCCACTACTACTATCACGTTGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATTCTCCAGCCCCTGCCCCCCACTACTACTATCACGTTGTCTTT  600

seq1  TCTTTCTGTCATCTGTGGGCAGGGTTTGTAGGACACTGTAGCCTAGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTCATCTGTGGGCAGGGTTTGTAGGACACTGTAGCCTAGGGGT  650

seq1  GGCCTCAACTGCTCTAGCTTCCTCATAGAACAATTACAGGGTCAGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAACTGCTCTAGCTTCCTCATAGAACAATTACAGGGTCAGGATGG  700

seq1  GAAAGATTTCAGGAGAGACTTGGAATGTGAGCCAAGGAAGGCTTTTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTCAGGAGAGACTTGGAATGTGAGCCAAGGAAGGCTTTTAGCT  750

seq1  TTTACCCTAGTTTGACAGATCTGTCAGAAATTGGGAGTTGTTTTC-TTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTACCCTAGTTTGACAGATCTGTCAGAAATTGGGAGTTGTTTTCTTTTC  800

seq1  TATGAGCACTTTGTAAAATAGGGAGGGTTGAAAGAGAGCGCCTTAACCGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCACTTTGTAAAATAGGGAGGGTTGAAAGAGAGCGCCTTAACCGT  850

seq1  CTCCATCTTGGATCTAATTTTCATAATCTCAAGTCATGGATCTGCAAAGA  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTGGATCT-ATTTTCATAATCTCAAGTCATGGATCTGCAAAGA  899

seq1  AATACCAGGTTCTGT-GTTAATGATGATCAAGACAAGGATTTGAGATTTC  948
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  AATACCAGGTTCTGTGGTTAATGATGATC-AGACAAGGATTTGAGATTTC  948

seq1  CTGGAATGTGGGCTTCATGAGTAGATTCACCCTGGAGCAATTGAAGCTGG  998
       |||||||||||||||||||||||| ||||||| |||||  || ||||||
seq2  TTGGAATGTGGGCTTCATGAGTAGA-TCACCCT-GAGCA--TGGAGCTGG  994

seq1  AGGAGGAAGAGT-GGGCTCCTCAACCCAGTTCACTGT-CTGGATTAGTTT  1046
      |||||||||||| ||||| ||  | | || ||||||| ||||||||| ||
seq2  AGGAGGAAGAGTGGGGCTTCTTCATCTAG-TCACTGTACTGGATTAGCTT  1043

seq1  GTATGCAATGGTAAGGGGCCTTTTAGAA  1074
      ||| | |||||||| ||| |||||||||
seq2  GTAAGTAATGGTAA-GGGACTTTTAGAA  1070