BAC Information

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BAC

Clone NameB6Ng01-003B15
Chromosome5 (Build37)
Map Location 64,987,496 - 65,090,869
singlet/doubletdoublet
Overlap geneLOC100042198
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894
Downstream geneKlf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003B15.bB6Ng01-003B15.g
ACCDH840920DH840921
length1,035976
definitionDH840920|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B15, 5' end.DH840921|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,987,496 - 64,988,534)(65,089,899 - 65,090,869)
sequence
gaattctttcaggatcctctcatattttccgtgcatttctgcagcaaaag
agcttgaggcgagctcactgaaacagaagaaataacacttagaaagtttg
ctaaaatacaacttggatccctcttttgctcatatgcagcacatccaggg
atgctatgctcccatcttccatctcctggaatctgcatcttgctcttgca
agttgtgtgtgtgtgtgtttgtgtgtgtgcatgtgttgcgtgttaaggtg
tctgggtcacacagagaaaactgtctgagaggggggagaggtcaaggtta
caatgaatatttaatacttgtgcatgcctatgcaaattacgtagtcatta
atgcttacctgatgtaaaatcaaagctagtggctggcttaaatcactggc
aaatcaggattttccttctctctcctgacagaatactagctttgacctgg
gaagttattcactgcttgtaaaagttgttagtaacacatggcccttgtgg
ctcgtcccatctaacaccctgtgtactcgtaactgttgtctagggggtaa
tcagatgaatgtttttttggttttgttttgttttttgttttgtttgtttg
tttagtttctcacttctactctaataacttcataaggttcttctattctc
aatttctataattcttacatttgctgcttacctttaaaaacaaaacacca
agcaacaacaaaagccagtcacacacaattgtgtattcaaggaatgacag
ctacgtttcaatttccagtttagttttagagccgtacagccagtgaggtt
tcaggaggcagaggatttgcaagccaggtgaccagtaagacatgggttta
aaaagtctctgtcccatagaaccctctgtgaaatggtgtgtgctgcagac
attggtgatataccgctgggggatgattgatggctgcctgtcagggagag
actgaattttcaaccgaattttacgcctaagtctccttggttaatgactg
ccgatgggacatcgagggaatttccgacttcagct
gaattcaagccatggagagatgctgctttctggcttgcttcccatggctt
gctccacctgctttcttacagaatccaggaccacgtgctcagggatggta
caacccccaatggactggatcctctcccactgatcactaattgagaaatt
gccttatagctggatctcatggaggcctttcctcaactgaagttcctttc
tctctgatgactaggtagtgtcaagttgacacacaaaaccagtcagtatg
ccatttatccagcttgataagttctcaaagcacaaagaagtatcatgtgc
acatttcttctaatcactggggtatctcacacaggcctggagctggggtt
gctgatggtggtctattagggcagacagaagatgatggaatggagagctt
gatctcttccatccaatgactgtgtgtgtgtgtgtgtgtttgtttgtgta
aaactgttagagattatttacattgtgaatttctaagtcatatcctgcta
cggttccacccagagggatagggcttaaatctgaactttgctaagaagat
tggcaaaaaatgcataggtagtccttagagaaactgtgtgttcaccctcg
tcagtcacacagctgtccacctttgtcctttcatttctgtctccagctag
aacatcaggctcggctcaactctgcctccacaggacctagtgtagctctc
tgtgagagttcaggtaagtatatcagggcctcctggcaaagcccatatct
ttgaggccatggtgaggccaggaacagtcatggggccaggtagtcagcac
aagaatttggctggggccagagtgcagaagttcagggccaaatcatgtgg
gagatggacgttgcatcgagggagtggtcaatagcacttttggtctcagg
acacaaatgttgaaagaggatcttgttccatcaagtagtggggaaggaag
gtgaacaccagtctatctagggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64987496_64988534
seq2: B6Ng01-003B15.b_45_1079

seq1  GAATTCTTTCAGGATCCTCTCATATTTTCCGTGCATTTCTGCAGCAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGGATCCTCTCATATTTTCCGTGCATTTCTGCAGCAAAAG  50

seq1  AGCTTGAGGCGAGCTCACTGAAACAGAAGAAATAACACTTAGAAAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAGGCGAGCTCACTGAAACAGAAGAAATAACACTTAGAAAGTTTG  100

seq1  CTAAAATACAACTTGGATCCCTCTTTTGCTCATATGCAGCACATCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATACAACTTGGATCCCTCTTTTGCTCATATGCAGCACATCCAGGG  150

seq1  ATGCTATGCTCCCATCTTCCATCTCCTGGAATCTGCATCTTGCTCTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGCTCCCATCTTCCATCTCCTGGAATCTGCATCTTGCTCTTGCA  200

seq1  AGTTGTGTGTGTGTGTGTTTGTGTGTGTGCATGTGTTGCGTGTTAAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTGTGTGTGTGTTTGTGTGTGTGCATGTGTTGCGTGTTAAGGTG  250

seq1  TCTGGGTCACACAGAGAAAACTGTCTGAGAGGGGGGAGAGGTCAAGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCACACAGAGAAAACTGTCTGAGAGGGGGGAGAGGTCAAGGTTA  300

seq1  CAATGAATATTTAATACTTGTGCATGCCTATGCAAATTACGTAGTCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATATTTAATACTTGTGCATGCCTATGCAAATTACGTAGTCATTA  350

seq1  ATGCTTACCTGATGTAAAATCAAAGCTAGTGGCTGGCTTAAATCACTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACCTGATGTAAAATCAAAGCTAGTGGCTGGCTTAAATCACTGGC  400

seq1  AAATCAGGATTTTCCTTCTCTCTCCTGACAGAATACTAGCTTTGACCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGATTTTCCTTCTCTCTCCTGACAGAATACTAGCTTTGACCTGG  450

seq1  GAAGTTATTCACTGCTTGTAAAAGTTGTTAGTAACACATGGCCCTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATTCACTGCTTGTAAAAGTTGTTAGTAACACATGGCCCTTGTGG  500

seq1  CTCGTCCCATCTAACACCCTGTGTACTCGTAACTGTTGTCTAGGGGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCCCATCTAACACCCTGTGTACTCGTAACTGTTGTCTAGGGGGTAA  550

seq1  TCAGATGAATGTTTTTTTGGTTTTGTTTTGTTTTTTGTTTTGTTTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAATGTTTTTTTGGTTTTGTTTTGTTTTTTGTTTTGTTTGTTTG  600

seq1  TTTAGTTTCTCACTTCTACTCTAATAACTTCATAAGGTTCTTCTATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTCTCACTTCTACTCTAATAACTTCATAAGGTTCTTCTATTCTC  650

seq1  AATTTCTATAATTCTTACA-TTGCTGCTTACCTTTAAAAACAAAACACCA  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATTTCTATAATTCTTACATTTGCTGCTTACCTTTAAAAACAAAACACCA  700

seq1  AGCAACAACAAAAGCCAGTCACACACAATTGTGTATTCAAGGAATGACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAACAAAAGCCAGTCACACACAATTGTGTATTCAAGGAATGACAG  750

seq1  CTACGTTTCAATTCCAAGTTTAGTTTTAGAGCCGTACAGCCAGTGAGGTT  799
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  CTACGTTTCAATTTCCAGTTTAGTTTTAGAGCCGTACAGCCAGTGAGGTT  800

seq1  CCAGGAGGCAGAGGATTTGCAAGCCAGGGTGACCAGTAAGAGCATGGGTC  849
       ||||||||||||||||||||||||| |||||||||||||| ||||||| 
seq2  TCAGGAGGCAGAGGATTTGCAAGCCA-GGTGACCAGTAAGA-CATGGGTT  848

seq1  TAAAAAGTCTCTGTCCAATAGAACCCTCTGTGATAATGGTGTGTGCTGCA  899
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  TAAAAAGTCTCTGTCCCATAGAACCCTCTGTGA-AATGGTGTGTGCTGCA  897

seq1  GACATTGGTGATATACCGCTGTGGGATGATTGATGGCTG-CTGTCAAGGG  948
      ||||||||||||||||||||| ||||||||||||||||| ||||| ||||
seq2  GACATTGGTGATATACCGCTGGGGGATGATTGATGGCTGCCTGTC-AGGG  946

seq1  AGAGACTGAATTTTCAACGGAATTTTAACGCAAAAG-CTCACTGTGTTAG  997
      |||||||||||||||||| ||||||| ||||  ||| ||| ||  |||| 
seq2  AGAGACTGAATTTTCAACCGAATTTT-ACGCCTAAGTCTC-CTTGGTTAA  994

seq1  TGACTGCCGAATGGGACATCGAGGGATATTCAGACTTCAGCT  1039
      ||||||||| ||||||||||||||||  ||| ||||||||||
seq2  TGACTGCCG-ATGGGACATCGAGGGAATTTCCGACTTCAGCT  1035

seq1: chr5_65089899_65090869
seq2: B6Ng01-003B15.g_68_1043 (reverse)

seq1  CCCTCCCTAGATGGGCCTGCTGTTCACCTTCC-TCCCCACTGCTTTGATG  49
      ||||||||||||  | ||| |||||||||||| |||||||| | ||||||
seq2  CCCTCCCTAGAT-AGACTGGTGTTCACCTTCCTTCCCCACTAC-TTGATG  48

seq1  GAACAAGATCCTCTTTCAACA-TTGTGTCCTGAGACC-AAAGTGCTATTG  97
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GAACAAGATCCTCTTTCAACATTTGTGTCCTGAGACCAAAAGTGCTATTG  98

seq1  ACCACTCCCTCGATGCAACGTCCATCTCCAACATGATTTGGCCCTGAACT  147
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCACTCCCTCGATGCAACGTCCATCTCCCACATGATTTGGCCCTGAACT  148

seq1  TCTGCACTCTGG-CCCAGCC-AATTCTTGTGCTGACTACCTGG-CCCATG  194
      |||||||||||| ||||||| |||||||||||||||||||||| ||||||
seq2  TCTGCACTCTGGCCCCAGCCAAATTCTTGTGCTGACTACCTGGCCCCATG  198

seq1  ACTGTTCCTGGCCTCACCATGGCCTC-AAGATATGGGCTTTGCCAGGAGG  243
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTGTTCCTGGCCTCACCATGGCCTCAAAGATATGGGCTTTGCCAGGAGG  248

seq1  CCCTGATATACTTACCTGAACTCTCACAGAGAGCTACACTAGGTCCTGTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATATACTTACCTGAACTCTCACAGAGAGCTACACTAGGTCCTGTG  298

seq1  GAGGCAGAGTTGAGCCGAGCCTGATGTTCTAGCTGGAGACAGAAATGAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGTTGAGCCGAGCCTGATGTTCTAGCTGGAGACAGAAATGAAA  348

seq1  GGACAAAGGTGGACAGCTGTGTGACTGACGAGGGTGAACACACAGTTTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGGTGGACAGCTGTGTGACTGACGAGGGTGAACACACAGTTTCT  398

seq1  CTAAGGACTACCTATGCATTTTTTGCCAATCTTCTTAGCAAAGTTCAGAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGACTACCTATGCATTTTTTGCCAATCTTCTTAGCAAAGTTCAGAT  448

seq1  TTAAGCCCTATCCCTCTGGGTGGAACCGTAGCAGGATATGACTTAGAAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCCTATCCCTCTGGGTGGAACCGTAGCAGGATATGACTTAGAAAT  498

seq1  TCACAATGTAAATAATCTCTAACAGTTTTACACAAACAAACACACACACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGTAAATAATCTCTAACAGTTTTACACAAACAAACACACACACA  548

seq1  CACACACAGTCATTGGATGGAAGAGATCAAGCTCTCCATTCCATCATCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGTCATTGGATGGAAGAGATCAAGCTCTCCATTCCATCATCTT  598

seq1  CTGTCTGCCCTAATAGACCACCATCAGCAACCCCAGCTCCAGGCCTGTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCCTAATAGACCACCATCAGCAACCCCAGCTCCAGGCCTGTGT  648

seq1  GAGATACCCCAGTGATTAGAAGAAATGTGCACATGATACTTCTTTGTGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACCCCAGTGATTAGAAGAAATGTGCACATGATACTTCTTTGTGCT  698

seq1  TTGAGAACTTATCAAGCTGGATAAATGGCATACTGACTGGTTTTGTGTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACTTATCAAGCTGGATAAATGGCATACTGACTGGTTTTGTGTGT  748

seq1  CAACTTGACACTACCTAGTCATCAGAGAGAAAGGAACTTCAGTTGAGGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACACTACCTAGTCATCAGAGAGAAAGGAACTTCAGTTGAGGAA  798

seq1  AGGCCTCCATGAGATCCAGCTATAAGGCAATTTCTCAATTAGTGATCAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCATGAGATCCAGCTATAAGGCAATTTCTCAATTAGTGATCAGT  848

seq1  GGGAGAGGATCCAGTCCATTGGGGGTTGTACCATCCCTGAGCACGTGGTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGATCCAGTCCATTGGGGGTTGTACCATCCCTGAGCACGTGGTC  898

seq1  CTGGATTCTGTAAGAAAGCAGGTGGAGCAAGCCATGGGAAGCAAGCCAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTCTGTAAGAAAGCAGGTGGAGCAAGCCATGGGAAGCAAGCCAGA  948

seq1  AAGCAGCATCTCTCCATGGCTTGAATTC  971
      ||||||||||||||||||||||||||||
seq2  AAGCAGCATCTCTCCATGGCTTGAATTC  976