BAC Information

Click to search

BAC

Clone NameB6Ng01-003B19
Chromosome5 (Build37)
Map Location 69,939,878 - 70,041,742
singlet/doubletdoublet
Overlap geneGuf1, Gnpda2
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003B19.bB6Ng01-003B19.g
ACCDH840925DH840926
length1,112490
definitionDH840925|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B19, 5' end.DH840926|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,040,606 - 70,041,742)(69,939,878 - 69,940,373)
sequence
gaattctatcgcctgacatcaaccaaacataaagagaaatgtaaagactt
catattaagaattatcttcacactggaaatcttcacaaaatgaagttact
caagtttatgtcactagaagttgaaaaggaaataaaaggaagtaaattga
ataatttagaagtttacaaaaaaaaaaagcccatggcctgtcaatcaatt
caaaacagaaaatctgaagttgttattaaaaatctccttaagggaacaag
gtgcattactcaatggtcaggatgattaatatctttaaatgttttactaa
tacgattaagttcgcagggtatttttctgtttataaaggataaacagaat
tagaaactatttgaagaacaaaggcctacaaagaaacgacagacctcata
ctgacagagtaaaatgtagtatgattaagaattcttttcttttgtttagc
ccagcatcaattatgagggattatgtgtccttgtcaatggatcatcttac
agtacttttagctgaaatgaaactcatattgtttaatattgtttagccat
aatagtcaacagaattacataatgccttatattgtataggatttctttct
ttctaagtttttaaactaaacatctcattcaaaaaagacaaaagcaaatc
tgtccaaatgaaacagaagagacattgataaaaatcaaacacaggtatgg
cccaccgattttaggaaatacaaaggcaggaaaagttacagaaagaagca
ctctttcttgcctcgtacaatgtgagggctctactaagtgatatacacat
gaaataatttgtgaaagaatattatttaaagtcataaatgggataatgaa
aaattattaaaattgaatctagaatggggagatactgaatgcatgatata
ttctttggagataggtagtaaatattggccaaagataggtccagacatat
aaataagaggatttaatgatagccaaatgatactgcatagactgacaaac
tgtcttcatgtagttgcagtgtaatctcagtgagggataacagaggatga
gagcattgcttgttcatcctcaagctctttgaggtgaagattctcagttg
gtggatctcagc
ttcatattcagaatccaatatgtaaacttatgaaacttcatgttaattta
tatttttgttgttacgaaccacttaaaaataagtacccaaggagctaaag
gggtatgcaaccctatagaaggaacaatgatatgaactaaccagtatccc
ccagagctgtgtctctagtcgaatatgtagcagaggatggcctaattggc
catcaatgggaggagaggcccttggtattgcgaagatcatatgccccagt
acaggggaatgccagggccaggaagcaggagtgggtgggttggggatcag
ggcaaggggaggctatagggggctttggggatagcatttgaaatgtaaat
gaagaaaatatctaataaaaatgtcaaaaaatttagtagcttgatcatca
gagaagcttcctcctgcagcaaatgggaacaaatacggagacccacagac
agacattacacagagaaaggaggtagggagggagggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_70040606_70041742
seq2: B6Ng01-003B19.b_43_1154 (reverse)

seq1  GCTGAGAAATCCACCAGAACTGGAGAATCTTCACCTCAAAGAGCTTTGAA  50
      ||||||  |||||||  |||| ||||||||||||||||||||||||    
seq2  GCTGAG--ATCCACC--AACT-GAGAATCTTCACCTCAAAGAGCTT----  41

seq1  GAGAATGAAACAAGCCAAATGCTTCTCCATCCCTCTGTTATCCCCTCACT  100
      ||| ||| |||||||  ||||| ||| ||| |||||||||| ||||||||
seq2  GAGGATG-AACAAGC--AATGC-TCT-CAT-CCTCTGTTAT-CCCTCACT  84

seq1  GAGATTTACACTTGCAACTACATGAAGACAGTTTGTTCAGTTCTTATGCA  150
      |||| |||||| ||||||||||||||||||||||| |||||   ||||||
seq2  GAGA-TTACAC-TGCAACTACATGAAGACAGTTTG-TCAGT--CTATGCA  129

seq1  GTTATCATTTTGGCTATCATTTAAATCCTCTTATTTATATGTCTGGACCT  200
      | ||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  G-TATCA-TTTGGCTATCA-TTAAATCCTCTTATTTATATGTCTGGACCT  176

seq1  ATCTTTTGGCCAATATTTACTACCTATCTCCAAAGAATATATCATGCATT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TTTGGCCAATATTTACTACCTATCTCCAAAGAATATATCATGCATT  225

seq1  CAGTATCTCCCCATTCTAGATTCAATTTTAATAATTTTTCATTATCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTCCCCATTCTAGATTCAATTTTAATAATTTTTCATTATCCCAT  275

seq1  TTATGACTTTAAATAATATTCTTTCACAAATTATTTCATGTGTATATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTTTAAATAATATTCTTTCACAAATTATTTCATGTGTATATCAC  325

seq1  TTAGTAGAGCCCTCACATTGTACGAGGCAAGAAAGAGTGCTTCTTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGAGCCCTCACATTGTACGAGGCAAGAAAGAGTGCTTCTTTCTGT  375

seq1  AACTTTTCCTGCCTTTGTATTTCCTAAAATCGGTGGGCCATACCTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCCTGCCTTTGTATTTCCTAAAATCGGTGGGCCATACCTGTGTT  425

seq1  TGATTTTTATCAATGTCTCTTCTGTTTCATTTGGACAGATTTGCTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTATCAATGTCTCTTCTGTTTCATTTGGACAGATTTGCTTTTGT  475

seq1  CTTTTTTGAATGAGATGTTTAGTTTAAAAACTTAGAAAGAAAGAAATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGAATGAGATGTTTAGTTTAAAAACTTAGAAAGAAAGAAATCCT  525

seq1  ATACAATATAAGGCATTATGTAATTCTGTTGACTATTATGGCTAAACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATATAAGGCATTATGTAATTCTGTTGACTATTATGGCTAAACAAT  575

seq1  ATTAAACAATATGAGTTTCATTTCAGCTAAAAGTACTGTAAGATGATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAATATGAGTTTCATTTCAGCTAAAAGTACTGTAAGATGATCCA  625

seq1  TTGACAAGGACACATAATCCCTCATAATTGATGCTGGGCTAAACAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGGACACATAATCCCTCATAATTGATGCTGGGCTAAACAAAAGA  675

seq1  AAAGAATTCTTAATCATACTACATTTTACTCTGTCAGTATGAGGTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCTTAATCATACTACATTTTACTCTGTCAGTATGAGGTCTGTC  725

seq1  GTTTCTTTGTAGGCCTTTGTTCTTCAAATAGTTTCTAATTCTGTTTATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGTAGGCCTTTGTTCTTCAAATAGTTTCTAATTCTGTTTATCC  775

seq1  TTTATAAACAGAAAAATACCCTGCGAACTTAATCGTATTAGTAAAACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACAGAAAAATACCCTGCGAACTTAATCGTATTAGTAAAACATT  825

seq1  TAAAGATATTAATCATCCTGACCATTGAGTAATGCACCTTGTTCCCTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATATTAATCATCCTGACCATTGAGTAATGCACCTTGTTCCCTTAA  875

seq1  GGAGATTTTTAATAACAACTTCAGATTTTCTGTTTTGAATTGATTGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTTTAATAACAACTTCAGATTTTCTGTTTTGAATTGATTGACAG  925

seq1  GCCATGGGCTTTTTTTTTTTGTAAACTTCTAAATTATTCAATTTACTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGCTTTTTTTTTTTGTAAACTTCTAAATTATTCAATTTACTTCC  975

seq1  TTTTATTTCCTTTTCAACTTCTAGTGACATAAACTTGAGTAACTTCATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCCTTTTCAACTTCTAGTGACATAAACTTGAGTAACTTCATTT  1025

seq1  TGTGAAGATTTCCAGTGTGAAGATAATTCTTAATATGAAGTCTTTACATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGATTTCCAGTGTGAAGATAATTCTTAATATGAAGTCTTTACATT  1075

seq1  TCTCTTTATGTTTGGTTGATGTCAGGCGATAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATGTTTGGTTGATGTCAGGCGATAGAATTC  1112

seq1: chr5_69939878_69940373
seq2: B6Ng01-003B19.g_68_563

seq1  GAATTCTTCATATTCAGAATCCAATATGTAAACTTATGAAACTTCATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATATTCAGAATCCAATATGTAAACTTATGAAACTTCATGTT  50

seq1  AATTTATATTTTTGTTGTTACGAACCACTTAAAAATAAGTACCCAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATTTTTGTTGTTACGAACCACTTAAAAATAAGTACCCAAGGAG  100

seq1  CTAAAGGGGTATGCAACCCTATAGAAGGAACAATGATATGAACTAACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGGTATGCAACCCTATAGAAGGAACAATGATATGAACTAACCAG  150

seq1  TATCCCCCAGAGCTGTGTCTCTAGTCGAATATGTAGCAGAGGATGGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCCAGAGCTGTGTCTCTAGTCGAATATGTAGCAGAGGATGGCCTA  200

seq1  ATTGGCCATCAATGGGAGGAGAGGCCCTTGGTATTGCGAAGATCATATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCATCAATGGGAGGAGAGGCCCTTGGTATTGCGAAGATCATATGC  250

seq1  CCCAGTACAGGGGAATGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACAGGGGAATGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTGGG  300

seq1  GATCAGGGCAAGGGGAGGCTATAGGGGGCTTTGGGGATAGCATTTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGCAAGGGGAGGCTATAGGGGGCTTTGGGGATAGCATTTGAAAT  350

seq1  GTAAATGAAGAAAATATCTAATAAAAATGTCAAAAAATTTAGTAGCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAAGAAAATATCTAATAAAAATGTCAAAAAATTTAGTAGCTTGA  400

seq1  TCATCAGAGAAGCTTCCTCCTGCAGCAAATGGGAACAAATACGGAGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAGAAGCTTCCTCCTGCAGCAAATGGGAACAAATACGGAGACCC  450

seq1  ACAGACAGACATTACACAGAGAAAGGAGGTAGGGAGGGAGGGAGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACATTACACAGAGAAAGGAGGTAGGGAGGGAGGGAGGG  496