BAC Information

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BAC

Clone NameB6Ng01-003B23
Chromosome5 (Build37)
Map Location 134,109,937 - 134,253,575
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039731
Downstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003B23.bB6Ng01-003B23.g
ACCDH840931DH840932
length1,0241,055
definitionDH840931|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B23, 5' end.DH840932|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,252,566 - 134,253,575)(134,109,937 - 134,111,005)
sequence
gaattcaatctctgtaatccatgttaaaaagccagacttgacagtgtgta
actgtaacccagcattgggaaggcttgctggtcattgcgtagccaaataa
tgagttccaggccagcgagacactgtctcaaaaccaaattggatggcatc
ctgataaatgatatcaaaggaaacacacacacacacacacacacacacac
acacacacacagagagagagagagagagacagagagagagagagagacag
agagagagagagagagagagagagagagagagagagagagagagagagaa
tattaacatctcactagtaagaacactgataacattaattcctaccagga
agtactgaactaaagagcagcagaaatgacccaaggatgagtccagtgtt
tggactgtagcaatgctagcaagcatgatcagggttgaataaacactggc
tatcttacagagacttctgagcaggaatgaaaatgggagactgtttttct
tccagggagaggatgtatggacagccacaggactggatatggatattctg
gacaacttctgggatgtggatacttgcaccaaggctgatacattttagcc
tacatgctccttgccttgtgccccacattgaacatccatggttgagggaa
acctttacagctgactgtgagagatgcatagaaacatactttgcttctga
aaaatgagtccagctcaattttcaagtcagaagtacatgaatcttttcca
tattttttccatatcttttccatgagcaaaagtggctgcccagagtccag
aaagagcatcttcaagaattttcctccaactactgcatctgcagaaggag
tcatgttttttatagaagctggtattcctcaggagaggactcattttcta
tgccatggaatactattttggagctctgccaaagcctccttgaactgcca
tgatagcaagtgttctgcatctctgtgtctcactttatgttctgagactt
cattagtggcagaattgaatcaat
gaattcttggtatcctgacaaacagagattggaatggccccaaagaactg
tttctgaacaggtccacatcctctcctcctatttaccatcttttgggggt
caaagaatttaagagcccttattaaaatgggctttaaaaaattttagtcc
tacggggaattattctcagttacatgggaagttcaaggccagcctcaaat
gcaatgacaccctgtctcaaattttttaagtcctaatacaatataaaaga
aaaccataatgaaagaagtgcatatttttttctaaaacaaaacaaaaaac
aaaacaaaacaaacaaaaaaaaacagagctaatattcagagaaatacaga
acttataacaattcagagaggaaagagcagcttgccagaaaacggcaaaa
attagaagcagatatctcacaggaaaacaacacagcatgagcagcccacg
aagccacagaaagattctaaacaataatcagagagatgtcatactgtcaa
aacatttgatgtgacgctgcaccaactcttggcagtgatgggaagcctcc
ggaaattcttaagcaccgtctgtgggcatttaaatggtcacagggaatct
ggaatgctcttgcttgaccctgcttggcacaaacagctagctgtccttca
agcccccttctccctcttcccagtactgtgatgctcctgagaagtgcctg
ccactattatcacaaataattagggagttgattaatgaatgaatcaatta
acaagtgtgactgaagatttggagagacgggaaccccagtgccctctcag
tgaggatgtaaacccggagcagctgctgtggaaaacagtgaaatcgttac
tcaaaagactaaaaagaactatcgtaggactatcccacccaacttgggat
ttggggatttttaccctaataatttaaatcagatcaacatgtcctttaaa
tgtagtctaaagaattggagagatgtagaaagcatctttaaaaaatggtc
taaaagaaatagtcaatacaatctcagtattgcagcaaacagttcactct
gcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134252566_134253575
seq2: B6Ng01-003B23.b_44_1067 (reverse)

seq1  ATTG-TTCAATTCTGCCACTAATGAAGTCTCAGAACATAAAGTGAGACAC  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCAATTCTGCCACTAATGAAGTCTCAGAACATAAAGTGAGACAC  50

seq1  AGAGATGCAGAACACTTGCTACCATGGCAGTTCAAGGAGGCTTTGGCAGA  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGATGCAGAACACTTGCTATCATGGCAGTTCAAGGAGGCTTTGGCAGA  100

seq1  GCTCC-AAATAGTA-TCCATGGCATAG-AAATGAGTCCTCTCCTGGGGAA  146
      ||||| |||||||| |||||||||||| ||||||||||||||||| ||||
seq2  GCTCCAAAATAGTATTCCATGGCATAGAAAATGAGTCCTCTCCTGAGGAA  150

seq1  TACCAGCTTCTAT-AGAAACATGACTCCTTCTGCAGATGCAGTAGTTGGA  195
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  TACCAGCTTCTATAAAAAACATGACTCCTTCTGCAGATGCAGTAGTTGGA  200

seq1  GG-AAATTCTTGAAGATGCTCTTTCTGGACTCTGGGCAGCCACTTTTGCT  244
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTCTTGAAGATGCTCTTTCTGGACTCTGGGCAGCCACTTTTGCT  250

seq1  CATGG-AAAGATATGG-AAAAATATGG-AAAGATTCATGTACTTCTGACT  291
      ||||| |||||||||| |||||||||| ||||||||||||||||||||||
seq2  CATGGAAAAGATATGGAAAAAATATGGAAAAGATTCATGTACTTCTGACT  300

seq1  TGAAAATTGAGCTGGACTCA-TTTTCAGAAGC-AAGTATGTTTCTATGCA  339
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  TGAAAATTGAGCTGGACTCATTTTTCAGAAGCAAAGTATGTTTCTATGCA  350

seq1  TCTCTCACAGTCAGCTGTAAAGGTTTCCCTCAACCATGGATGTTCAATGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACAGTCAGCTGTAAAGGTTTCCCTCAACCATGGATGTTCAATGT  400

seq1  GGGGCACAAGGCAAGGAGCATGTAGGCT-AAATGTATCAGCCTTGGTGCA  438
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGGCACAAGGCAAGGAGCATGTAGGCTAAAATGTATCAGCCTTGGTGCA  450

seq1  AGTATCCACATCCCAGAAGTTGTCCAGAATATCCATATCCAGTCCTGTGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCACATCCCAGAAGTTGTCCAGAATATCCATATCCAGTCCTGTGG  500

seq1  CTGTCCATACATCCTCTCCCTGGAAGAAAAACAGTCTCCCATTTTCATTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATACATCCTCTCCCTGGAAGAAAAACAGTCTCCCATTTTCATTC  550

seq1  CTGCTCAGAAGTCTCTGTAAGATAGCCAGTGTTTATTCAACCCTGATCAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGAAGTCTCTGTAAGATAGCCAGTGTTTATTCAACCCTGATCAT  600

seq1  GCTTGCTAGCATTGCTACAGTCCAAACACTGGACTCATCCTTGGGTCATT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTAGCATTGCTACAGTCCAAACACTGGACTCATCCTTGGGTCATT  650

seq1  TCTGCTGCTCTTTAGTTCAGTACTTCCTGGTAGGAATTAATGTTATCAGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTCTTTAGTTCAGTACTTCCTGGTAGGAATTAATGTTATCAGT  700

seq1  GTTCTTACTAGTGAGATGTTAATAT--TCTCTCTCTCTCTCTCTCTCTCT  736
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  GTTCTTACTAGTGAGATGTTAATATTCTCTCTCTCTCTCTCTCTCTCTCT  750

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTGTCTCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTGTCTCT  800

seq1  CTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  850

seq1  GTTTCCTTTGATATCATTTATCAGGATGCCATCCAATTTGGTTTTGAGAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTGATATCATTTATCAGGATGCCATCCAATTTGGTTTTGAGAC  900

seq1  AGTGTCTCGCTGGCCTGGAACTCATTATTTGGCTACGCAATGACCAGCAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCGCTGGCCTGGAACTCATTATTTGGCTACGCAATGACCAGCAA  950

seq1  GCCTTCCCAATGCTGGGTTACAGTTACACACTGTCAAGTCTGGCTTTTTA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCAATGCTGGGTTACAGTTACACACTGTCAAGTCTGGCTTTTTA  1000

seq1  ACATGGATTACAGAGATTGAATTC  1010
      ||||||||||||||||||||||||
seq2  ACATGGATTACAGAGATTGAATTC  1024

seq1: chr5_134109937_134111005
seq2: B6Ng01-003B23.g_68_1122

seq1  GAATTCTTGGTATCCTGACAAACAGAGATTGGAATGGCCCCAAAGAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTATCCTGACAAACAGAGATTGGAATGGCCCCAAAGAACTG  50

seq1  TTTCTGAACAGGTCCACATCCTCTCCTCCTATTTACCATCTTTTGGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAACAGGTCCACATCCTCTCCTCCTATTTACCATCTTTTGGGGGT  100

seq1  CAAAGAATTTAAGAGCCCTTATTAAAATGGGCTTTAAAAAATTTTAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATTTAAGAGCCCTTATTAAAATGGGCTTTAAAAAATTTTAGTCC  150

seq1  TACGGGGAATTATTCTCAGTTACATGGGAAGTTCAAGGCCAGCCTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGGAATTATTCTCAGTTACATGGGAAGTTCAAGGCCAGCCTCAAAT  200

seq1  GCAATGACACCCTGTCTCAAATTTTTTAAGTCCTAATACAATATAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGACACCCTGTCTCAAATTTTTTAAGTCCTAATACAATATAAAAGA  250

seq1  AAACCATAATGAAAGAAGTGCATATTTTTTTCTAAAACAAAACAAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATAATGAAAGAAGTGCATATTTTTTTCTAAAACAAAACAAAAAAC  300

seq1  AAAACAAAACAAACAAAAAAAAACAGAGCTAATATTCAGAGAAATACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAACAAAAAAAAACAGAGCTAATATTCAGAGAAATACAGA  350

seq1  ACTTATAACAATTCAGAGAGGAAAGAGCAGCTTGCCAGAAAACGGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAACAATTCAGAGAGGAAAGAGCAGCTTGCCAGAAAACGGCAAAA  400

seq1  ATTAGAAGCAGATATCTCACAGGAAAACAACACAGCATGAGCAGCCCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGCAGATATCTCACAGGAAAACAACACAGCATGAGCAGCCCACG  450

seq1  AAGCCACAGAAAGATTCTAAACAATAATCAGAGAGATGTCATACTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGAAAGATTCTAAACAATAATCAGAGAGATGTCATACTGTCAA  500

seq1  AACATTTGATGTGACGCTGCACCAACTCTTGGCAGTGATGGGAAGCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGATGTGACGCTGCACCAACTCTTGGCAGTGATGGGAAGCCTCC  550

seq1  GGAAATTCTTAAGCACCGTCTGTGGGCATTTAAATGGTCACAGGGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCTTAAGCACCGTCTGTGGGCATTTAAATGGTCACAGGGAATCT  600

seq1  GGAATGCTCTTGCTTGACCCTGCTTGGCACAAACAGCTAGCTGTCCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTCTTGCTTGACCCTGCTTGGCACAAACAGCTAGCTGTCCTTCA  650

seq1  AGCCCCCTTCTCCCTCTTCCCAGTACTGTGATGCTCCTGAGAAGTGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTTCTCCCTCTTCCCAGTACTGTGATGCTCCTGAGAAGTGCCTG  700

seq1  CCACTATTATCACAAATAATTAGGGAGTTGATTAATGAATGAATCAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATTATCACAAATAATTAGGGAGTTGATTAATGAATGAATCAATTA  750

seq1  ACAAGTGTGACTGAAGATTTGGAGAGACGGGAACCCCAGTGCCCTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGACTGAAGATTTGGAGAGACGGGAACCCCAGTGCCCTCTCAG  800

seq1  TGAGGATGTAAA-CCGGAGCAGCTGCTGTGGAAAACAGTGAAATCGTTAC  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGTAAACCCGGAGCAGCTGCTGTGGAAAACAGTGAAATCGTTAC  850

seq1  TCAAAAGACTAAAAAGAACTATCGTAGGACTATCCCACCCAACTTTGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAAAAGACTAAAAAGAACTATCGTAGGACTATCCCACCCAAC-TTGGGA  899

seq1  TTTGGGGATTTTTACCCTAAATAATTTAAATCAGGATCAACATGTCCCTT  949
      |||||||||||||||||| |||||||||||||| ||||||||||| ||||
seq2  TTTGGGGATTTTTACCCT-AATAATTTAAATCA-GATCAACATGT-CCTT  946

seq1  AAAATGTAGGTCTAAAGAATTGGAGAGATGTAAGAAAAGCATCTTTTAAA  999
       ||||||| |||||||||||||||||||||||   |||||||| ||||||
seq2  TAAATGTA-GTCTAAAGAATTGGAGAGATGTA--GAAAGCATC-TTTAAA  992

seq1  AAATGGTCTAAAAGAAATAG-CCATACAATCCCAAGTATTTTGGCAAGGC  1048
      |||||||||||||||||||| | |||||||| | ||||||   |||  ||
seq2  AAATGGTCTAAAAGAAATAGTCAATACAATCTC-AGTATT---GCA--GC  1036

seq1  AAACAGTTTCACTCCTGCAGA  1069
      |||||| |||||| |||||||
seq2  AAACAG-TTCACT-CTGCAGA  1055