BAC Information

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BAC

Clone NameB6Ng01-003C02
Chromosome5 (Build37)
Map Location 150,838,833 - 150,972,687
singlet/doubletdoublet
Overlap geneRxfp2
Upstream geneHmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089
Downstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003C02.bB6Ng01-003C02.g
ACCDH840937DH840938
length1,136994
definitionDH840937|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C02, 5' end.DH840938|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,838,833 - 150,839,981)(150,971,692 - 150,972,687)
sequence
gaattccaggcataggaaataacaggctccaaggctgactggaataaact
ggaaaagccacgtgacttaagcctaagaagtgtgagaaggtcacccagtt
cattacccaagacccccaggccaagctgagggctatgtgctgagaccata
catctcggctgatctaatctgcctatttgcccatgaggagaactgatggc
tggtcaaggttgacagctgaagtccatcacagtcaatgctgagacccagc
ccttcccaatctgcacatgaggccagctctcctcagtgctggccaactag
catctgagcggggcggccgcaccctggagtgccgagcggctgtgtgtaac
ttgttgtctcacccctgggtactcggaagcacccttcccttggatggaaa
actactctgccaacctcagcccacccctgttcctccttcacactcagttc
agaggtgggggacatggttcaggggaagaattttgcctaagcatgcagca
ggcactaagatcaatccctaatatctaagacagacaaaaacactcagttc
aatgaccctctccttctgggcatgcccatgggtaaatctccagccacgta
gagtcatgtgtgttacgttgtcacctcttggcagatgcaagcacctaaga
aaagaatcttctttgctttgttaccaccagaatgtaggatagtagggtac
acaggaggcactcaatctgtgctcagtagggtacacagtaagcacttaac
ctgtgctcagatcagatgtacttctctgattatcagtgaacaagccaaca
agatttcttctttgctacgagggagtcaaaggccacatctgtttatctac
ccaccaccaggacgttttgaacacagactgaacaaagcacgtggaatagc
tgataatacagttaaaggcaccacagcagcacaattcagatatgaaaaag
aatagggggctggtgagatgctcagttgggaagagcacctgactgctctt
cgaagtcagagttcaaatcccagcacacatgtggctcacaacatctgtac
gagatcttgactcccttctctggtgtgtctgaggaagctaaggtacttaa
atgtaagatatagattaattcttttaaaaaatgaaa
gaattcagggataagctgggcagtggtggcacatggctttaatcccagca
cttgggaggcagaggcaggtgtatctctgagtttgaggccagcctggtct
acagagtgagttccaggacagccagggctacacagagaaaccctgtcttg
aaaaaaatggaaaaaaaaaaaagaattcagggataaaatgggacaatgga
tccatataagccagaggagggacccaagtcatatgaccatgcattcagac
tgactcttttgaggcctgtgactgcatccgggttggtggtagggaagaaa
caagaagggagagaaagtggaaggactcaacggttgtttcaattcagttc
attttctttttaattctttagatttactgattttatgtctatgatttttc
ttgcatgtgtccatgcatcatgtgcgtgtagtatctacagattccagaag
agggtgtcggatctcctggaattagagtgacagctggttgtgagctgtca
tgtgggtgccgggaattgaacctgggttctctgctagagcagccagtgct
tttaattactgagcaatctctccagtctcagttcattttatgaaattttc
attttgaggttttaagatcacaacatttgcaataagaaagtttcttctat
cagtattgagcctggattttaatttttgtattaacacacatacacacgca
cacacacaaaatctgtgttgctatttacacagatttattgacttcacctt
atgatgcaaaccacctgatgatatttatttacaggatcataatgagaaat
tacatgtataaggctggtttgtttgcatatgatactcaaacttccctaaa
tgatgcttaagattcaaacccgagtcattcacattcaaacgttgctaaaa
accaaattccaaaatgctggcacagatagtcacatattatcggtttattc
ctatccttcaaaatatttgctcaggacagatagcatttcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150838833_150839981
seq2: B6Ng01-003C02.b_44_1179

seq1  GAATTCCAGGCATAGGAAATAACAGGCTCCAAGGCTGACTGGAATAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCATAGGAAATAACAGGCTCCAAGGCTGACTGGAATAAACT  50

seq1  GGAAAAGCCACGTGACTTAAGCCTAAGAAGTGTGAGAAGGTCACCCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCCACGTGACTTAAGCCTAAGAAGTGTGAGAAGGTCACCCAGTT  100

seq1  CATTACCCAAGACCCCCAGGCCAAGCTGAGGGCTATGTGCTGAGACCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCAAGACCCCCAGGCCAAGCTGAGGGCTATGTGCTGAGACCATA  150

seq1  CATCTCGGCTGATCTAATCTGCCTATTTGCCCATGAGGAGAACTGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCGGCTGATCTAATCTGCCTATTTGCCCATGAGGAGAACTGATGGC  200

seq1  TGGTCAAGGTTGACAGCTGAAGTCCATCACAGTCAATGCTGAGACCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGGTTGACAGCTGAAGTCCATCACAGTCAATGCTGAGACCCAGC  250

seq1  CCTTCCCAATCTGCACATGAGGCCAGCTCTCCTCAGTGCTGGCCAACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAATCTGCACATGAGGCCAGCTCTCCTCAGTGCTGGCCAACTAG  300

seq1  CATCTGAGCGGGGCGGCCGCACCCTGGAGTGCCGAGCGGCTGTGTGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGCGGGGCGGCCGCACCCTGGAGTGCCGAGCGGCTGTGTGTAAC  350

seq1  TTGTTGTCTCACCCCTGGGTACTCGGAAGCACCCTTCCCTTGGATGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCTCACCCCTGGGTACTCGGAAGCACCCTTCCCTTGGATGGAAA  400

seq1  ACTACTCTGCCAACCTCAGCCCACCCCTGTTCCTCCTTCACACTCAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTGCCAACCTCAGCCCACCCCTGTTCCTCCTTCACACTCAGTTC  450

seq1  AGAGGTGGGGGACATGGTTCAGGGGAAGAATTTTGCCTAAGCATGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGGGACATGGTTCAGGGGAAGAATTTTGCCTAAGCATGCAGCA  500

seq1  GGCACTAAGATCAATCCCTAATATCTAAGACAGACAAAAACACTCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAAGATCAATCCCTAATATCTAAGACAGACAAAAACACTCAGTTC  550

seq1  AATGACCCTCTCCTTCTGGGCATGCCCATGGGTAAATCTCCAGCCACGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCCTCTCCTTCTGGGCATGCCCATGGGTAAATCTCCAGCCACGTA  600

seq1  GAGTCATGTGTGTTACGTTGTCACCTCTTGGCAGATGCAAGCACCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGTGTGTTACGTTGTCACCTCTTGGCAGATGCAAGCACCTAAGA  650

seq1  AAAGAATCTTCTTTGCTTTGTTACCACCAGAATGTAGGATAGTAGGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCTTCTTTGCTTTGTTACCACCAGAATGTAGGATAGTAGGGTAC  700

seq1  ACAGGAGGCACTCAATCTGTGCTCAGTAGGGTACACAGTAAGCACTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGCACTCAATCTGTGCTCAGTAGGGTACACAGTAAGCACTTAAC  750

seq1  CTGTGCTCAGATCAGATGTACTTCTCTGATTATCAGTGAACAAGCCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCAGATCAGATGTACTTCTCTGATTATCAGTGAACAAGCCAACA  800

seq1  AGATTTCTTCTTTGCTACGAGGGAGTCAAAGGCCACATCTGTTTATCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTCTTTGCTACGAGGGAGTCAAAGGCCACATCTGTTTATCTAC  850

seq1  CCACCACCAGGACGTTCTGAACACAGACTGAACAAAGCACGTGGAATAGC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCACCACCAGGACGTTTTGAACACAGACTGAACAAAGCACGTGGAATAGC  900

seq1  TGATAATACAGTTAAAGGCACCACAGCAGCACAATTCAGGATATGAAAAA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGATAATACAGTTAAAGGCACCACAGCAGCACAATTCA-GATATGAAAAA  949

seq1  GGAATAGGGGGCTGGTGAGATGGCTCAGTGGGGAAGAGCACCTGACTGCT  1000
       |||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  -GAATAGGGGGCTGGTGAGAT-GCTCAGTTGGGAAGAGCACCTGACTGCT  997

seq1  CTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA  1050
      ||| |||||   |||||||||||||||||||  ||||| |||||||||||
seq2  CTT-CGAAG--TCAGAGTTCAAATCCCAGCA--CACAT-GTGGCTCACAA  1041

seq1  CCATCTGTAACGAGATC-TGACTCCCTCTTCTGGTGTGTCTGAGGACAGC  1099
       ||||||| |||||||| |||||||||  ||||||||||||||||| |||
seq2  -CATCTGT-ACGAGATCTTGACTCCCTTCTCTGGTGTGTCTGAGGA-AGC  1088

seq1  TACAGTGTACTTACATGTAGTAAATAGATAAATCTTTTTAAAAAATGAAA  1149
      || || ||||||| |||||  | |||||| |||  |||||||||||||||
seq2  TA-AG-GTACTTAAATGTAAGATATAGATTAATTCTTTTAAAAAATGAAA  1136

seq1: chr5_150971692_150972687
seq2: B6Ng01-003C02.g_64_1057 (reverse)

seq1  AAAAAAAAATGCTATCTTGTCCTGAGCAGATATTTTTGAAGGGATA-GAA  49
      ||||| |||||||||| ||||||||||| ||| ||||||| ||||| |||
seq2  AAAAAGAAATGCTATC-TGTCCTGAGCAAATA-TTTTGAA-GGATAGGAA  47

seq1  TATAACGTTAATATGTGACCTATCTTTTCCAGCA-TCTGGAATTTGGTTT  98
      || | || |||||||||| |||||| | |||||| | |||||||||| ||
seq2  TAAACCGATAATATGTGA-CTATCTGTGCCAGCATTTTGGAATTTGG-TT  95

seq1  TTTAGCAAACGTTTGAATGTGAATGACTCGAGTTTGAATCTTAAGCATCA  148
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTAGC-AACGTTTGAATGTGAATGACTCGGGTTTGAATCTTAAGCATCA  144

seq1  TTTAGGG-AGTCTGAGTATCATATGCAAACAAACCAGCCTTATACATGTA  197
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAAGTTTGAGTATCATATGCAAACAAACCAGCCTTATACATGTA  194

seq1  ATTTCTCATTATGATCCTGTAAATAAATATCATCAGGTGGTTTGCATCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATTATGATCCTGTAAATAAATATCATCAGGTGGTTTGCATCAT  244

seq1  AAGGTGAAGTCAATAAATCTGTGTAAATAGCAACACAGA-TTTGTGTGTG  296
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGTGAAGTCAATAAATCTGTGTAAATAGCAACACAGATTTTGTGTGTG  294

seq1  TGCGTGTGTATGTGTGTTAATACAAAAATTAAAATCCAGGCTCAATACTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTGTATGTGTGTTAATACAAAAATTAAAATCCAGGCTCAATACTG  344

seq1  ATAGAAGAAACTTTCTTATTGCAAATGTTGTGATCTTAAAACCTCAAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAAACTTTCTTATTGCAAATGTTGTGATCTTAAAACCTCAAAAT  394

seq1  GAAAATTTCATAAAATGAACTGAGACTGGAGAGATTGCTCAGTAATTAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTCATAAAATGAACTGAGACTGGAGAGATTGCTCAGTAATTAAA  444

seq1  AGCACTGGCTGCTCTAGCAGAGAACCCAGGTTCAATTCCCGGCACCCACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCTGCTCTAGCAGAGAACCCAGGTTCAATTCCCGGCACCCACA  494

seq1  TGACAGCTCACAACCAGCTGTCACTCTAATTCCAGGAGATCCGACACCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTCACAACCAGCTGTCACTCTAATTCCAGGAGATCCGACACCCT  544

seq1  CTTCTGGAATCTGTAGATACTACACGCACATGATGCATGGACACATGCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAATCTGTAGATACTACACGCACATGATGCATGGACACATGCAA  594

seq1  GAAAAATCATAGACATAAAATCAGTAAATCTAAAGAATTAAAAAGAAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCATAGACATAAAATCAGTAAATCTAAAGAATTAAAAAGAAAAT  644

seq1  GAACTGAATTGAAACAACCGTTGAGTCCTTCCACTTTCTCTCCCTTCTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAATTGAAACAACCGTTGAGTCCTTCCACTTTCTCTCCCTTCTTG  694

seq1  TTTCTTCCCTACCACCAACCCGGATGCAGTCACAGGCCTCAAAAGAGTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCTACCACCAACCCGGATGCAGTCACAGGCCTCAAAAGAGTCA  744

seq1  GTCTGAATGCATGGTCATATGACTTGGGTCCCTCCTCTGGCTTATATGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATGCATGGTCATATGACTTGGGTCCCTCCTCTGGCTTATATGGA  794

seq1  TCCATTGTCCCATTTTATCCCTGAATTCTTTTTTTTTTTTCCATTTTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTCCCATTTTATCCCTGAATTCTTTTTTTTTTTTCCATTTTTTT  844

seq1  CAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGT  894

seq1  AGACCAGGCTGGCCTCAAACTCAGAGATACACCTGCCTCTGCCTCCCAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCAAACTCAGAGATACACCTGCCTCTGCCTCCCAAG  944

seq1  TGCTGGGATTAAAGCCATGTGCCACCACTGCCCAGCTTATCCCTGAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGCCATGTGCCACCACTGCCCAGCTTATCCCTGAATTC  994