BAC Information

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BAC

Clone NameB6Ng01-003D08
Chromosome5 (Build37)8 (Build37)
Map Location 41,532,841 - 41,533,31668,540,422 - 68,541,644
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003D08.bB6Ng01-003D08.g
ACCDH840990DH840991
length1,1231,208
definitionDH840990|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D08, 5' end.DH840991|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,532,841 - 41,533,316)(68,540,422 - 68,541,644)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgagaacactt
tattaccgtgacccgcagttctggttccggaatgagggatcttccttgcg
ccggtgatggtaaactctcgtcccgagttttttttcccaggtttcctctt
cccggattttctcgtccccgaatttttcgtcccgggtttcggcaccaatt
ctttttttttttttttttttttttttaaatttttttttccattttttatt
aggtatttaactcatttacatttccaatgctatatcaaaagtcccccata
tccacccacccccactcccctgcccacccactccccctttttggccctgg
aattcccctgtactggggcatataaagtttgcaagtccaatgggcctctc
tttccagtgatggccgactaggccatcttttgatatatatgcagctagag
tcaagagctccggggtactggttagctcataatgttgttccacctatagg
gttgcagatccctttagctccttggctactttctctagctcctccattgg
gagccctatgatccatccattagctgactgtgagcatccacttctgtgtt
tgctgggccccggcatagtctcacaagagacagctacatctgcgtccttt
caataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctgat
tatggggtggatccctggctatggcagtctctacatggtccatcctttca
tctcagctccaaactccgtctctgtaactccttccatgggtgttttgttc
ccaaatctaagaggggcatagtgtccacacttcagtcttcattctccttg
agtttcatgtgtttagcaattatatcttatatcttgggtatcctaggttt
ggggctaatatccacttatcagtgatacatatgggtggagttccttgtga
tgtgttacctcacctcaggatgatgccctccaggtccatccatttgctag
atttcataatcattcttttaatagctgcgcgcctgcaggagaacacacaa
ctaatcttctgcgtccactttattgcttactcttcgaccggagcgcactc
tctcagccagcagtccccaattc
gaattcttctgtaagcctctctggcagctgattgactttatgctatatat
gttgacaagccagagcccttgtgaactagagctgacgaaatacacgaatt
attctagggggacaaagaattaaaagttagtgtttgaaggtggcgggatg
tttcttttccatgttcaatgttactgtttaattttctttgataatgccac
ttctgttaatgtgcactgatggtatagtacactctgatgggaaaatttaa
ccctccaaatagtgttgcaaacaaggtccttgtttcatttttcccctttg
cataaaggtttactagaagcaatccattctcttttagataagactgtttc
ataaaaaattcagccttataagatatatacacaaacaggaaaaacagact
cagcaggttgtgtttatatatttgtttatatatccatacatatgtgtata
taaaaatagtaatcagaacagaggttattaacttgaaagcgaaggaagac
atgaaagggttagaagcagagtacctgggaaaaatggaggaggatagtat
agggaggaaaattatattttaataaaatcttttgcctatttatgtgttga
aataattatctttcaatttagtacttctcccctctttctcattaattacc
gtatgtttcattccatcagccattttattattttttaaagtgtgaaacaa
catcattgataacaaatctttccttgagagaaaaaaatgaatacactcat
ctttttagcattcttgcctcaaacatcaagacataggacatttatatttg
tttaaatatcatcatataacagtatctttgtcagccattgaaagcaaatt
acctaactaaaataataataataacatgcattgaaataatattacatagc
ttatagagtcaaagcaaaaattaaatagctcattctcaagtagaccaggg
caggggaaactctgacactgtcagcagaataaaaccagcctcgggtattt
gattcttactcttgtcatttattccaaaagatcaaattctagccaaatgt
atcatcttgctggaatagctttagttaagtacttctcagcctagaaacca
gcaagcacctgttctctataaagtttccgacagaaattcctctctgttga
aaagaacactcttattattttgaaggagggaattggattgatgacaatcc
ataagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41532841_41533316
seq2: B6Ng01-003D08.b_654_1169

seq1  CCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAA  50
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  CCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTCAATAAA  50

seq1  ATCTTGTTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGG  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGG  100

seq1  TGGATCCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTGTGTCTCAGC  150
      ||||||||||| |||||||||||||| |||||||||||||   |||||||
seq2  TGGATCCCTGGCTATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGC  150

seq1  TCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCACTTC  200
      ||||||||  ||||||||||||||||||||||||||||||||||||  ||
seq2  TCCAAACTCCGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATC  200

seq1  TAAGGAGGGGCATAGTATCCACACTTCAGTCTTCATTTTTCTTGAGTTTC  250
      ||| |||||||||||| |||||||||||||||||||| | ||||||||||
seq2  TAA-GAGGGGCATAGTGTCCACACTTCAGTCTTCATTCTCCTTGAGTTTC  249

seq1  ATGTGTTTAGGAAATTGTATCTTATATCTTGGGTATCCTAGGTTTTGGGC  300
      ||||||||| | |||| |||||||||||||||||||||||||||| ||||
seq2  ATGTGTTTA-GCAATTATATCTTATATCTTGGGTATCCTAGGTTTGGGGC  298

seq1  TAATATCCACTTGTC-----------TGGTTTTAAGT--TTGTAATGTAT  337
      |||||||||||| ||           ||| |  |  |  |||| |||| |
seq2  TAATATCCACTTATCAGTGATACATATGGGTGGAGTTCCTTGTGATGTGT  348

seq1  T--CT-ATGGTAGGATTTTATGCC--------AAAACCATTTGC-----C  371
      |  || |    ||||  | |||||          | ||||||||      
seq2  TACCTCACCTCAGGA--TGATGCCCTCCAGGTCCATCCATTTGCTAGATT  396

seq1  TCATGAACAGGACATGAA----AGAGAGCATGAGAGGGGCCAGCGCACTA  417
      |||| | ||     | ||     | | || ||  ||| |  | | ||| |
seq2  TCATAATCATTCTTTTAATAGCTGCGCGCCTG-CAGGAG--AACACACAA  443

seq1  -TAAACCACT---TCCACTAGATGCTACTGATAATCTACAAATGCCG---  460
       ||| |  ||   ||||||  ||  | ||  || ||| | |  |  |   
seq2  CTAATCTTCTGCGTCCACTTTAT--TGCT--TACTCTTCGACCGGAGCGC  489

seq1  -----------CAGCAGTCCCCAATTC  476
                 ||||||||||||||||
seq2  ACTCTCTCAGCCAGCAGTCCCCAATTC  516

seq1: chr8_68540422_68541644
seq2: B6Ng01-003D08.g_67_1274 (reverse)

seq1  GCTCTCTATGGATTTTGTTCATCTAATTTCCAATTCCCTTCCTTCCAAAA  50
      ||||| ||||||||    ||||| |   |||||||||| ||||| |||||
seq2  GCTCT-TATGGATT---GTCATCAA---TCCAATTCCC-TCCTT-CAAAA  41

seq1  TAAT-AGAGTTGTTTCTTTCTAACAGAGATGTATTTTCTGTTAGAAAACT  99
      |||| |||||   ||||||  |||||||| | | |||||||  ||||   
seq2  TAATAAGAGT--GTTCTTTTCAACAGAGA-GGAATTTCTGTCGGAAA--C  86

seq1  TTTATAAGAG-ACAGGTGCTTTGCTGTGTTCTA-GCTGAGAGGTACTTAA  147
      ||||| |||| |||||||| ||||||  ||||| ||||||| ||||||||
seq2  TTTAT-AGAGAACAGGTGC-TTGCTGGTTTCTAGGCTGAGAAGTACTTAA  134

seq1  CTAAAGCTAATCCAGCAAGATGATACATTTGGCTTAGAATTTGATCTTTT  197
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  CTAAAGCTATTCCAGCAAGATGATACATTTGGC-TAGAATTTGATCTTTT  183

seq1  GGAATAAATGACAAGAGTAAGAATCAAATACCCGAGGCTGGTTTTATTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAATGACAAGAGTAAGAATCAAATACCCGAGGCTGGTTTTATTCT  233

seq1  GCTGGACAGTGTCAGAGTTTCCCCTGCCCTGGTCTACTTGAGAATGAGCT  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCT-GACAGTGTCAGAGTTTCCCCTGCCCTGGTCTACTTGAGAATGAGCT  282

seq1  ATTTAATTTTTGCTTTGACTCTATAAGCTATGTAATATTATTTCAATGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTTGCTTTGACTCTATAAGCTATGTAATATTATTTCAATGCA  332

seq1  TGTTATTATTATTATTTTAGTTAGGTAATTTGCTTTCAATGGCTGACAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTATTATTATTTTAGTTAGGTAATTTGCTTTCAATGGCTGACAAA  382

seq1  GATACTGTTATATGATGATATTTAAACAAATATAAATGTCCTATGTCTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTTATATGATGATATTTAAACAAATATAAATGTCCTATGTCTTG  432

seq1  ATGTTTGAGGCAAGAATGCTAAAAAGATGAGTGTATTCATTTTTTTCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAGGCAAGAATGCTAAAAAGATGAGTGTATTCATTTTTTTCTCT  482

seq1  CAAGGAAAGATTTGTTATCAATGATGTTGTTTCACACTTTAAAAAATAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGATTTGTTATCAATGATGTTGTTTCACACTTTAAAAAATAAT  532

seq1  AAAATGGCTGATGGAATGAAACATACGGTAATTAATGAGAAAGAGGGGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCTGATGGAATGAAACATACGGTAATTAATGAGAAAGAGGGGAG  582

seq1  AAGTACTAAATTGAAAGATAATTATTTCAACACATAAATAGGCAAAAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTAAATTGAAAGATAATTATTTCAACACATAAATAGGCAAAAGAT  632

seq1  TTTATTAAAATATAATTTTCCTCCCTATACTATCCTCCTCCATTTTTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAAATATAATTTTCCTCCCTATACTATCCTCCTCCATTTTTCCC  682

seq1  AGGTACTCTGCTTCTAACCCTTTCATGTCTTCCTTCGCTTTCAAGTTAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTCTGCTTCTAACCCTTTCATGTCTTCCTTCGCTTTCAAGTTAAT  732

seq1  AACCTCTGTTCTGATTACTATTTTTATATACACATATGTATGGATATATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGTTCTGATTACTATTTTTATATACACATATGTATGGATATATA  782

seq1  AACAAATATATAAACACAACCTGCTGAGTCTGTTTTTCCTGTTTGTGTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATATATAAACACAACCTGCTGAGTCTGTTTTTCCTGTTTGTGTAT  832

seq1  ATATCTTATAAGGCTGAATTTTTTATGAAACAGTCTTATCTAAAAGAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATAAGGCTGAATTTTTTATGAAACAGTCTTATCTAAAAGAGAA  882

seq1  TGGATTGCTTCTAGTAAACCTTTATGCAAAGGGGAAAAATGAAACAAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCTTCTAGTAAACCTTTATGCAAAGGGGAAAAATGAAACAAGGA  932

seq1  CCTTGTTTGCAACACTATTTGGAGGGTTAAATTTTCCCATCAGAGTGTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTGCAACACTATTTGGAGGGTTAAATTTTCCCATCAGAGTGTAC  982

seq1  TATACCATCAGTGCACATTAACAGAAGTGGCATTATCAAAGAAAATTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCATCAGTGCACATTAACAGAAGTGGCATTATCAAAGAAAATTAAA  1032

seq1  CAGTAACATTGAACATGGAAAAGAAACATCCCGCCACCTTCAAACACTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACATTGAACATGGAAAAGAAACATCCCGCCACCTTCAAACACTAA  1082

seq1  CTTTTAATTCTTTGTCCCCCTAGAATAATTCGTGTATTTCGTCAGCTCTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTCTTTGTCCCCCTAGAATAATTCGTGTATTTCGTCAGCTCTA  1132

seq1  GTTCACAAGGGCTCTGGCTTGTCAACATATATAGCATAAAGTCAATCAGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAGGGCTCTGGCTTGTCAACATATATAGCATAAAGTCAATCAGC  1182

seq1  TGCCAGAGAGGCTTACAGAAGAATTC  1223
      ||||||||||||||||||||||||||
seq2  TGCCAGAGAGGCTTACAGAAGAATTC  1208