BAC Information

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BAC

Clone NameB6Ng01-003N22
Chromosome5 (Build37)
Map Location 16,458,925 - 16,460,069
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N22.bB6Ng01-003N22.g
ACCDH841448DH841449
length1,2141,121
definitionDH841448|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N22, 5' end.DH841449|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaattgaggaataccaaatggctgagaaccagctaaaaaaatt
ttcaacatccttaatcatcagggaaatgcaaaccaaaacaacactgagat
tccacctcacaccaatcagaatggctaagataaagaactcaggtgacagc
agataatggtgaggatgtgggaaaagaggaacactcctccattgctggtg
ggattgcatgctggtacaaccactctggaaatcagtttggcggttcctca
gaaaattgggcataatgctactggaagatccagcaataccactcctgggc
ttatagtcagaagatgttccaacttgtaataagaacacatgctccactat
gttcatagcacccttatttataatagtcagaagcttgaaagaaccctgat
gtccctcaacagagaaatggatacagaaaatgtggtatgtttacataatg
gagtactactcagctattaaaaacaaggaatttatgaaattcttagaaaa
atggatggatacggaggttatcatcctaagtgaggtaacccaatcacaaa
agaacacccatgatattcactcactaatgagtggatattagcccaggagc
tcagaatacccaagatacaatttgaaaaacacatgaaactcaagaagaag
gaagaccaaagtgtggatacttcgatccttcttaaaatggggaacaaaat
acccatggaaggagttatagagacaaagttcggagcagagaatgaaggaa
aggccatccagagactgccccacctgaggatccatcccataaacaaccac
caaaatcaaacactattgcagatgccaacaagagcttgctgacaggagcc
tgataaagctgtctcgtgaggggctttcccagtgcctgacaaatacagaa
gtggaagctcacacagccatccattggattgagcacatggtccccaaatg
aaaaagctagagaaggacccaaggatctgaaggggtttgcagccctatag
gaggacacaatatgactattcagtatcctccgagcttctctgggactaat
catcaatcaagaaacactttggactcatgattaactgctaggtaagcgaa
ggatgtctagtcttgtcatcaatggagggagggaccttgtatctgtaaag
tcttattcccagtagggaatgtctcggtcaggtagcagtaatgtgatgtg
ttgtgcgagaaacg
gaattctatttatctgatgttgagtccagagacaaggcaggcacaataga
tcaataaaagaccataatcatggcagagagagggagagacctctactgaa
aaagtgaatgtttaagagaacagaaacacaccaacattcaatagctagct
agatgctgtgttcaaagaacgaaacttgatcaacgctaagaagggggagc
tatcttcagaactgagaaagtgccaagaggaagggaggagaagcacacag
aggacatgaggacaacttgaccttgttaaggtgcaggaagagagctcctg
tggttagactggggaataaggaggggaaccaaggagatttcaacagtgtt
ctttcaaattgtttgtttgggagtcttcactttgcatgaaggaaaacaaa
acaatccaaaatactttatttgtatgactacacattttaaaagtatattt
gcagtcattatgaagccaagacataatcaatgctttctagtgatgattct
tatttttgacatatgtttttgttcattgctgaaataaaatggcctctttc
aactttgtttttcctaaggtagatttactttcctgaggctaaatgttcta
cttatttgatattttttagtcaaacatagtgagaaagccaatcctctgct
gcacataactattttttttcctgaggtttccaaagaagacattattctcg
tataccctgaatatttatttataaaggttctacaaggaaggaaggaaaac
cacagaaaattgtgaatcaagagatgaaaggtaaacacagtagcttgttg
aaacatgggtaacaaatgatgaggctgactgcagaaaaagcactgagagt
tctcattggacatggaaagttgttgaattgagaccacaactgataaatca
ggagaggatgtttaagttaaagtaccatactacctttcagagaaagagaa
ttgtgattctattccatcttttgatatcaggatcagacggacttttgctc
ttttaagtatactcaaataaacatttagaatacatttacaatgctattag
cttcaatagtattaatttatcagataatcaaatgctcaatatttctgatg
tcattaattttctagcatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16458925_16460069
seq2: B6Ng01-003N22.g_66_1186 (reverse)

seq1  ATCATTCCTAGAAAATTAATGAACATCAAGAAAATATTTGAAGCATTTGA  50
      |||| | |||||||||||||| ||||||   |||||||   |||||||||
seq2  ATCA-TGCTAGAAAATTAATG-ACATCA--GAAATATT--GAGCATTTGA  44

seq1  TTATCTTGTATAATTTAATACTATTGAAGGCTAAATAGCATTTGTAAATG  100
      ||||||   |||| |||||||||||||| ||| ||||||| |||||||||
seq2  TTATCT--GATAAATTAATACTATTGAA-GCT-AATAGCA-TTGTAAATG  89

seq1  TATTTCTAAATGTTTAATTTGAGTTATACTTTAAAAGAGCAAAAAGTTCC  150
      || |||||||||||| ||||||| ||||| ||||||||||||||   |||
seq2  TA-TTCTAAATGTTT-ATTTGAG-TATAC-TTAAAAGAGCAAAA--GTCC  133

seq1  GTCTGATCCTGATATTCAAAGATGGAATAGAATCACAATTTCTCTTTTCT  200
      |||||||||||||||  ||||||||||||||||||||| ||||| |||||
seq2  GTCTGATCCTGATATCAAAAGATGGAATAGAATCACAA-TTCTC-TTTCT  181

seq1  CTTGAAAGGTAGTTATGGTACTTTAACTTAAACATCCTCTCCCTGATTTA  250
      | |||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  C-TGAAAGGTAG-TATGGTACTTTAACTTAAACATCCTCT-CCTGATTTA  228

seq1  TCAGTTTGTGGTCTCAATTTCAACAACTTTCCATGTCCAATGAGAACTCT  300
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAG-TTGTGGTCTCAA-TTCAACAACTTTCCATGTCCAATGAGAACTCT  276

seq1  CAGTGCTTTTTCTGCAGTCAGCCTCATCATTTGTTACCCATGTTTCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTTTCTGCAGTCAGCCTCATCATTTGTTACCCATGTTTCAACA  326

seq1  AGCTACTGTGTTTACCTTTCATCTCTTGATTCACAATTTTCTGTGGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTGTGTTTACCTTTCATCTCTTGATTCACAATTTTCTGTGGTTTT  376

seq1  CCTTCCTTCCTTGTAGAACCTTTATAAATAAATATTCAGGGTATACGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTGTAGAACCTTTATAAATAAATATTCAGGGTATACGAGA  426

seq1  ATAATGTCTTCTTTGGAAACCTCAGGAAAAAAAATAGTTATGTGCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCTTCTTTGGAAACCTCAGGAAAAAAAATAGTTATGTGCAGCAG  476

seq1  AGGATTGGCTTTCTCACTATGTTTGACTAAAAAATATCAAATAAGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGGCTTTCTCACTATGTTTGACTAAAAAATATCAAATAAGTAGAA  526

seq1  CATTTAGCCTCAGGAAAGTAAATCTACCTTAGGAAAAACAAAGTTGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCCTCAGGAAAGTAAATCTACCTTAGGAAAAACAAAGTTGAAAG  576

seq1  AGGCCATTTTATTTCAGCAATGAACAAAAACATATGTCAAAAATAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTTTATTTCAGCAATGAACAAAAACATATGTCAAAAATAAGAAT  626

seq1  CATCACTAGAAAGCATTGATTATGTCTTGGCTTCATAATGACTGCAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTAGAAAGCATTGATTATGTCTTGGCTTCATAATGACTGCAAATA  676

seq1  TACTTTTAAAATGTGTAGTCATACAAATAAAGTATTTTGGATTGTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAAAATGTGTAGTCATACAAATAAAGTATTTTGGATTGTTTTGT  726

seq1  TTTCCTTCATGCAAAGTGAAGACTCCCAAACAAACAATTTGAAAGAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCATGCAAAGTGAAGACTCCCAAACAAACAATTTGAAAGAACAC  776

seq1  TGTTGAAATCTCCTTGGTTCCCCTCCTTATTCCCCAGTCTAACCACAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAATCTCCTTGGTTCCCCTCCTTATTCCCCAGTCTAACCACAGGA  826

seq1  GCTCTCTTCCTGCACCTTAACAAGGTCAAGTTGTCCTCATGTCCTCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTCCTGCACCTTAACAAGGTCAAGTTGTCCTCATGTCCTCTGTG  876

seq1  TGCTTCTCCTCCCTTCCTCTTGGCACTTTCTCAGTTCTGAAGATAGCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCCTCCCTTCCTCTTGGCACTTTCTCAGTTCTGAAGATAGCTCC  926

seq1  CCCTTCTTAGCGTTGATCAAGTTTCGTTCTTTGAACACAGCATCTAGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTAGCGTTGATCAAGTTTCGTTCTTTGAACACAGCATCTAGCTA  976

seq1  GCTATTGAATGTTGGTGTGTTTCTGTTCTCTTAAACATTCACTTTTTCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGAATGTTGGTGTGTTTCTGTTCTCTTAAACATTCACTTTTTCAG  1026

seq1  TAGAGGTCTCTCCCTCTCTCTGCCATGATTATGGTCTTTTATTGATCTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTCTCTCCCTCTCTCTGCCATGATTATGGTCTTTTATTGATCTAT  1076

seq1  TGTGCCTGCCTTGTCTCTGGACTCAACATCAGATAAATAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGCCTTGTCTCTGGACTCAACATCAGATAAATAGAATTC  1121