BAC Information

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BAC

Clone NameB6Ng01-004B13
Chromosome5 (Build37)
Map Location 82,725,586 - 82,896,558
singlet/doubletdoublet
Overlap geneEG433912
Upstream geneLphn3
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004B13.bB6Ng01-004B13.g
ACCDH841600DH841601
length1,0461,178
definitionDH841600|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B13, 5' end.DH841601|Mus musculus domesticus DNA, BAC clone: B6Ng01-004B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,725,586 - 82,726,646)(82,895,345 - 82,896,558)
sequence
gaattctcctctctctgttttccagtgctagattgcacataggtagacca
gcatgggaggctttttaattttttttaacatggttttgagcctctgaact
tgggtcctcatgtttgatcagcaagcactttgcctcctaatttatctctc
cagcctatattactgatttttaaagtaatggctttaggaactattgacaa
aatcttatagtcatccaacacaattgaagtaaatattatttttaacttaa
atatactattataaaggcaaaattaattgttttcattaaaccatatttag
taaagctaaatacttttttaaatgatgcaagaacttaaagatactttgta
tagtccacgaagaaggtaagatacctagttacacaataggcactataaaa
caatttatgaaaagatggtagtaaaagacataattatgaaataaatttct
ggtgttattatctgactattatctctttttaatgtatttctcttggttta
ctgagttgacagccacttttggctatatgatgtactgcagaaatacttga
agaaaagggctgtctgagattctatcttacttctgtcagtatggttaaga
aaaaaaaaaatctcatgtgatagcacatgctagtgagggtgtggagcaaa
acacttccccattgctagtggcagtgcaaactagtagagtcactctgaaa
attaatttggtggtttctcaagaaattgggaatagttcccaaaacccagc
atatacccgggcatataccccaaaattgcccgactatatcacaagatact
tgctcaaatatgttcatagcaactttactcataaaaagaaaaatctgtca
ataacctagatgtccctcaactgaggaatggatgaagaaaatatggtaca
tctttacatggaatactacaagctattaaaaggacatcatgaaatttgca
agcaatggatggactagaaattatctactaagtgagcacccagacccaga
aagaatgtatatacacattacattgacgttagcacaagtacagaat
gaattcctctacactggtgcccttcacaggaccaagaccctctcatccca
ttgatgccgttttcaataaatattgtcctttctttctttactgaaaatga
gaactttcaatttgctatagataaagtacttaaaacaactattaacatat
atatcttatgaaaaagaaaataatattactccaaaacattgcactgacag
aatacaagaagtcaaatttcccatacttgggattattataagctgcattc
tgccaagaaaattggaatttctagccaaaataataattttaaatgtgtaa
ctattttattctactttcttgctattgctgttgtatagctaatcaacttg
ttgaaagatcaaatcaactcactatagccacaaaagtagaaatatgtaac
agggaactgaattttttaattgtgtaagaacattctcttttaatataaaa
ttcaatttctaaataactattctgtatgtggaatattcaaggtgcataat
ttaatgcataataaaatccctcatgtgaaatacaatccatttctcaccta
tggataaaatgttccatggtgggaatgcttgataacaatataaagataga
gatttaggggatagaaagatgtctcaatgtttaagaacacttactactat
tgcagtgaatccatgttctgtttccaaaaccatatatgaatcatggattc
ttgtaactctcgctccatgaattccaacacttctggctttcacaggctct
tgaacataggtggtgcacataaactcacccatgaacacacacacaatcat
aaattaatcatactttttaaaatatagccattcatccaaagaggtacatc
ctaaaacaatagtgacttaaaatgaaatatttcttattttcaaaagcaca
aatggctgtacataattctgtgttccagtaactttctttctgtttgtaaa
tccattcaggaaatgggcctggtcaagttaaatgtttcctgttcatttct
gctagacataggaaatttaaatttctcctcagatcaacatgctgcaataa
atttaatatataaaactgaaattttatccacgcgatgatttattgaataa
acacaatcgagtatttgctactccgaattcatagtttccaaataagctgt
tagcctggggtattcctaagttgttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82725586_82726646
seq2: B6Ng01-004B13.b_46_1091

seq1  GAATTCTCCTCTCTCTGTTTTCCAGTGCTAGATTGCACATAGGTAGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTCTCTGTTTTCCAGTGCTAGATTGCACATAGGTAGACCA  50

seq1  GCATGGGAGGCTTTTTAATTTTTTTTAACATGGTTTTGAGCCTCTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAGGCTTTTTAATTTTTTTTAACATGGTTTTGAGCCTCTGAACT  100

seq1  TGGGTCCTCATGTTTGATCAGCAAGCACTTTGCCTCCTAATTTATCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTCATGTTTGATCAGCAAGCACTTTGCCTCCTAATTTATCTCTC  150

seq1  CAGCCTATATTACTGATTTTTAAAGTAATGGCTTTAGGAACTATTGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATATTACTGATTTTTAAAGTAATGGCTTTAGGAACTATTGACAA  200

seq1  AATCTTATAGTCATCCAACACAATTGAAGTAAATATTATTTTTAACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATAGTCATCCAACACAATTGAAGTAAATATTATTTTTAACTTAA  250

seq1  ATATACTATTATAAAGGCAAAATTAATTGTTTTCATTAAACCATATTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTATTATAAAGGCAAAATTAATTGTTTTCATTAAACCATATTTAG  300

seq1  TAAAGCTAAATACTTTTTTAAATGATGCAAGAACTTAAAGATACTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAAATACTTTTTTAAATGATGCAAGAACTTAAAGATACTTTGTA  350

seq1  TAGTCCACGAAGAAGGTAAGATACCTAGTTACACAATAGGCACTATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCACGAAGAAGGTAAGATACCTAGTTACACAATAGGCACTATAAAA  400

seq1  CAATTTATGAAAAGATGGTAGTAAAAGACATAATTATGAAATAAATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATGAAAAGATGGTAGTAAAAGACATAATTATGAAATAAATTTCT  450

seq1  GGTGTTATTATCTGACTATTATCTCTTTTTAATGTATTTCTCTTGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTATTATCTGACTATTATCTCTTTTTAATGTATTTCTCTTGGTTTA  500

seq1  CTGAGTTGACAGCCACTTTTGGCTATATGATGTACTGCAGAAATACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTGACAGCCACTTTTGGCTATATGATGTACTGCAGAAATACTTGA  550

seq1  AGAAAAGGGCTGTCTGAGATTCTATCTTACTTCTGTCAGTATGGTTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGCTGTCTGAGATTCTATCTTACTTCTGTCAGTATGGTTAAGA  600

seq1  AAAAAAAAAATCTCATGTGATAGCACATGCTAGTGAGGGTGTGGAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCTCATGTGATAGCACATGCTAGTGAGGGTGTGGAGCAAA  650

seq1  ACACTTCCCCATTGCTAGTGGCAGTGCAAACTAGTAGAGTCACTCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCCCATTGCTAGTGGCAGTGCAAACTAGTAGAGTCACTCTGAAA  700

seq1  ATTAATTTGGTGGTTTCTCAAGAAATTGGGAATAGTTCCCAAAACCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTGGTGGTTTCTCAAGAAATTGGGAATAGTTCCCAAAACCCAGC  750

seq1  ATATACCCGGGCATATACCCCAAAATTGCCCGACTATATCACAAGATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCCGGGCATATACCCCAAAATTGCCCGACTATATCACAAGATACT  800

seq1  TGCTCAAATATGTTCATAGCAACTTTACTCATAAAAAGAAAAATCTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAATATGTTCATAGCAACTTTACTCATAAAAAGAAAAATCTGTCA  850

seq1  ATAACCTAGATGTCCCTCAACTGAGGAATGGATGAAGAAAATATGGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTAGATGTCCCTCAACTGAGGAATGGATGAAGAAAATATGGTACA  900

seq1  TCTTTACAATGGAATACTACAAAGCTATTAAAAAGGACATCATGAAATTT  950
      ||||||| |||||||||||| |||||||| ||||||||||||||||||||
seq2  TCTTTAC-ATGGAATACTAC-AAGCTATT-AAAAGGACATCATGAAATTT  947

seq1  GCAAGCAAATGGATGGAACTAGAAATTATCTACCTAAGTGAGGCAACCCA  1000
      |||||| ||||||||| ||||||||||||||| |||||||||   |||||
seq2  GCAAGC-AATGGATGG-ACTAGAAATTATCTA-CTAAGTGAG--CACCCA  992

seq1  GACCCAGAAAGAAATGGTATATACACATTTACAATTGAACGTTAGCCACA  1050
      |||||||||||||   ||||||||||| |||| |||| ||||||| ||| 
seq2  GACCCAGAAAGAA--TGTATATACACA-TTAC-ATTG-ACGTTAG-CAC-  1035

seq1  AAGTACAGAAT  1061
      |||||||||||
seq2  AAGTACAGAAT  1046

seq1: chr5_82895345_82896558
seq2: B6Ng01-004B13.g_67_1244 (reverse)

seq1  GACAACAACTTAAAGGGAAATACCCCAAGCTAACACAGGGCTTTATATTT  50
      ||||||||||||    | ||||||||| |||||||    |||   |||||
seq2  GACAACAACTTA----GGAATACCCCAGGCTAACA----GCT---TATTT  39

seq1  GGGAAACTATGGATTCTGGGAGTAGCAAAATACTCTGGATTGTG-TTATT  99
       |||||||||| ||||  |||||||| ||||||||  ||||||| |||||
seq2  -GGAAACTATGAATTC--GGAGTAGC-AAATACTC--GATTGTGTTTATT  83

seq1  CAATTTAAATTCATTCGCGTGGATAAAATATCAGTTTTATATATTAAATT  149
      ||||   || ||| ||||||||||||||| ||||||||||||||||||||
seq2  CAAT---AAATCA-TCGCGTGGATAAAATTTCAGTTTTATATATTAAATT  129

seq1  TGTATTTGCAGGCATGTTGATTCTTGGAGGGAAGAAATTTTAAATTTCCT  199
      |    ||||| ||||||||| |||  ||||  ||||| ||||||||||| 
seq2  T---ATTGCA-GCATGTTGA-TCT--GAGG--AGAAA-TTTAAATTTCC-  168

seq1  TATTGGTTCTAGCAGAAATGGAAACAGGAAACATTTAACCTGACCAGGCC  249
      |||    |||||||||||||  ||||||||||||||||| ||||||||||
seq2  TAT---GTCTAGCAGAAATG--AACAGGAAACATTTAACTTGACCAGGCC  213

seq1  CATATCCTGGATGGATTTACAAACAGAAAGAAAGTTACTGGAACACAGAA  299
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTGAATGGATTTACAAACAGAAAGAAAGTTACTGGAACACAGAA  263

seq1  TTATGTACAGCCATTTGTGCTTTTGAAAATAAGAAATATTTCATTTTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACAGCCATTTGTGCTTTTGAAAATAAGAAATATTTCATTTTAAG  313

seq1  TCACTATTGTTTTAGGATGTACCTCTTTGGATGAATGGCTATATTTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATTGTTTTAGGATGTACCTCTTTGGATGAATGGCTATATTTTAAA  363

seq1  AAGTATGATTAATTTATGATTGTGTGTGTGTTCATGGGTGAGTTTATGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGATTAATTTATGATTGTGTGTGTGTTCATGGGTGAGTTTATGTG  413

seq1  CACCACCTATGTTCAAGAGCCTGTGAAAGCCAGAAGTGTTGGAATTCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTATGTTCAAGAGCCTGTGAAAGCCAGAAGTGTTGGAATTCATG  463

seq1  GAGCGAGAGTTACAAGAATCCATGATTCATATATGGTTTTGGAAACAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAGAGTTACAAGAATCCATGATTCATATATGGTTTTGGAAACAGAA  513

seq1  CATGGATTCACTGCAATAGTAGTAAGTGTTCTTAAACATTGAGACATCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTCACTGCAATAGTAGTAAGTGTTCTTAAACATTGAGACATCTT  563

seq1  TCTATCCCCTAAATCTCTATCTTTATATTGTTATCAAGCATTCCCACCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCCTAAATCTCTATCTTTATATTGTTATCAAGCATTCCCACCAT  613

seq1  GGAACATTTTATCCATAGGTGAGAAATGGATTGTATTTCACATGAGGGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTTTATCCATAGGTGAGAAATGGATTGTATTTCACATGAGGGAT  663

seq1  TTTATTATGCATTAAATTATGCACCTTGAATATTCCACATACAGAATAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATGCATTAAATTATGCACCTTGAATATTCCACATACAGAATAGT  713

seq1  TATTTAGAAATTGAATTTTATATTAAAAGAGAATGTTCTTACACAATTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAAATTGAATTTTATATTAAAAGAGAATGTTCTTACACAATTAA  763

seq1  AAAATTCAGTTCCCTGTTACATATTTCTACTTTTGTGGCTATAGTGAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGTTCCCTGTTACATATTTCTACTTTTGTGGCTATAGTGAGTT  813

seq1  GATTTGATCTTTCAACAAGTTGATTAGCTATACAACAGCAATAGCAAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGATCTTTCAACAAGTTGATTAGCTATACAACAGCAATAGCAAGAA  863

seq1  AGTAGAATAAAATAGTTACACATTTAAAATTATTATTTTGGCTAGAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATAAAATAGTTACACATTTAAAATTATTATTTTGGCTAGAAATT  913

seq1  CCAATTTTCTTGGCAGAATGCAGCTTATAATAATCCCAAGTATGGGAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTCTTGGCAGAATGCAGCTTATAATAATCCCAAGTATGGGAAAT  963

seq1  TTGACTTCTTGTATTCTGTCAGTGCAATGTTTTGGAGTAATATTATTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTTGTATTCTGTCAGTGCAATGTTTTGGAGTAATATTATTTTC  1013

seq1  TTTTTCATAAGATATATATGTTAATAGTTGTTTTAAGTACTTTATCTATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAAGATATATATGTTAATAGTTGTTTTAAGTACTTTATCTATA  1063

seq1  GCAAATTGAAAGTTCTCATTTTCAGTAAAGAAAGAAAGGACAATATTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTGAAAGTTCTCATTTTCAGTAAAGAAAGAAAGGACAATATTTAT  1113

seq1  TGAAAACGGCATCAATGGGATGAGAGGGTCTTGGTCCTGTGAAGGGCACC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACGGCATCAATGGGATGAGAGGGTCTTGGTCCTGTGAAGGGCACC  1163

seq1  AGTGTAGAGGAATTC  1214
      |||||||||||||||
seq2  AGTGTAGAGGAATTC  1178