BAC Information

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BAC

Clone NameB6Ng01-004D16
Chromosome5 (Build37)
Map Location 55,622,387 - 55,760,094
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004D16.bB6Ng01-004D16.g
ACCDH841701DH841702
length8901,104
definitionDH841701|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D16, 5' end.DH841702|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,622,387 - 55,623,274)(55,758,977 - 55,760,094)
sequence
gaattctatcattacatgcccacatttaatagctttacctcatgcttgtt
ttgtgccttctttttataaacttataatgttttaagtgccccaaaatata
gattggaatatgtattaggaagctttttatctatcacttaaattctagca
tgaaggaagactggcattgcatgatattaagacttttaagcatgagaaag
ctattcattttttagatcctctataatgctgttttattgaagttccatta
tttattataaaaacctatatatcatttgataaatttattttcaaataaaa
tgcttttatagcttctgtaaatcataccatagaatatgtgttaaaaatgt
ttgtatagcactaatgttcagaaataaaattaactttttaaatcttttat
ccactgaaatttctaatgccttcaattatttatagtaaattgtcaatgtt
tctgtttcatatagaaaatcattattgagaaataatggaagttttattct
ctgctttcattttctgtgtatttattgtgtattgtttttatattttgctg
cataaaatctccagtgaaaaattgaataagaaacaaataatattttaata
tttactagttacactattgaaacaatgatttttaacttgctcatttagtt
ggttgtttattaatattgtacattgtatagatatcatttttcaaattaaa
agcttgcattttattagttcaattaaaaattaatttacttattgtctgct
aagtctaggaaacgatttctggtcttgagatattaaaaaaaaaaaataga
cccaaatccttgccttataaaatttaaattttactgattcttctttacta
atgctatttctttgtggtgtgtgtgtgtatgtgtgtgtgg
gaattccatgccaccagagggagtccatgcctgacagggcctgaatggcc
aggaatgagaattcttgtgtaactcctaactgtaggaatggggtaggaac
tgtgacattttaatctgcacttgtgacccatttcctccaactgggttgtc
tattccagcattgtggttctgagtgtacatgcctagtcttattgtaactt
gttatgccacattaggttgatatccctgagaagcctggtcttttctgaag
ggaaaaggaagagaagtgggtaaagggagtatctaagaggaatggaggaa
gaggaaactgctgtccagatgaaatataggacataggaataaaatcaatc
aaccaagcaatcaataatctgccagatatagtggcatgtgtctttaattc
aagcagatttccagcaatgggaggcagaggcatgaagaacttactgagct
tcattgccagtttagtttacaatgagattaaggccagcaaggactacatt
aaaaagaatcagtttctaaaaatactgaatctacaaagtctaataaactt
ttgatagccagcatattgctgattttatttctcatacagtgaaagatatt
gcatacacaattagaaaggcttcaacagaagtaagacacgacctgtcttg
gctatactgacatctcacagggaaggactaccagtattttaacctgtgcc
tcctgttcttatttctcactatcagcagtagcgatccattacccactatt
tcaagaaaccaagcagagacaggattatcaacaccaagtggctgctttca
aaagtgacactactgactgaatagtcagcatcaaaaaatattaccatttt
ataccatacacatattctctgggaaatgcatgcccagaagaaagccctgg
agatgaaaacaggaaggttacagaaagggaacttgttaaaatgtgactca
atctaacctgccattaaatcagcaaagcaaattcttgtgagaacagccag
aaagcattgcaccaccatagaatagatgtcacattatgctatatagtgct
tgtttgtgtgcatgcttagaattgcccatctttgtgaaacttgcaattgc
ttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55622387_55623274
seq2: B6Ng01-004D16.b_45_933

seq1  GAATTCTATCATTACATGCCCACATTTAATAGCTTTACCTCATGCTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCATTACATGCCCACATTTAATAGCTTTACCTCATGCTTGTT  50

seq1  TTGTGCCTTCTTTTTATAAACTTATAATGTTTTAAGTGCCCCAAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTTCTTTTTATAAACTTATAATGTTTTAAGTGCCCCAAAATATA  100

seq1  GATTGGAATATGTATTAGGAAGCTTTTTATCTATCACTTAAATTCTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAATATGTATTAGGAAGCTTTTTATCTATCACTTAAATTCTAGCA  150

seq1  TGAAGGAAGACTGGCATTGCATGATATTAAGACTTTTAAGCATGAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAGACTGGCATTGCATGATATTAAGACTTTTAAGCATGAGAAAG  200

seq1  CTATTCATTTTTTAGATCCTCTATAATGCTGTTTTATTGAAGTTCCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTTTTTAGATCCTCTATAATGCTGTTTTATTGAAGTTCCATTA  250

seq1  TTTATTATAAAAACCTATATATCATTTGATAAATTTATTTTCAAATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATAAAAACCTATATATCATTTGATAAATTTATTTTCAAATAAAA  300

seq1  TGCTTTTATAGCTTCTGTAAATCATACCATAGAATATGTGTTAAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATAGCTTCTGTAAATCATACCATAGAATATGTGTTAAAAATGT  350

seq1  TTGTATAGCACTAATGTTCAGAAATAAAATTAACTTTTTAAATCTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGCACTAATGTTCAGAAATAAAATTAACTTTTTAAATCTTTTAT  400

seq1  CCACTGAAATTTCTAATGCCTTCAATTATTTATAGTAAATTGTCAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAAATTTCTAATGCCTTCAATTATTTATAGTAAATTGTCAATGTT  450

seq1  TCTGTTTCATATAGAAAATCATTATTGAGAAATAATGGAAGTTTTATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCATATAGAAAATCATTATTGAGAAATAATGGAAGTTTTATTCT  500

seq1  CTGCTTTCATTTTCTGTGTATTTATTGTGTATTGTTTTTATATTTTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCATTTTCTGTGTATTTATTGTGTATTGTTTTTATATTTTGCTG  550

seq1  CATAAAATCTCCAGTGAAAAATTGAATAAGAAACAAATAATATTTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATCTCCAGTGAAAAATTGAATAAGAAACAAATAATATTTTAATA  600

seq1  TTTACTAGTTACACTATTGAAACAATGATTTTTAACTTGCTCATTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGTTACACTATTGAAACAATGATTTTTAACTTGCTCATTTAGTT  650

seq1  GGTTGTTTATTAATATTGTACATTGTATAGATATCATTTTTCAAATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTATTAATATTGTACATTGTATAGATATCATTTTTCAAATTAAA  700

seq1  AGCTTGCATTTTATTAGTTCAATTAAAAATTAATTTACTTATTGTCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCATTTTATTAGTTCAATTAAAAATTAATTTACTTATTGTCTGCT  750

seq1  AAGTCTAGGAAACGATTTCTGGTCTTGAGATATT-AAAAAAAAAAATAGA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGTCTAGGAAACGATTTCTGGTCTTGAGATATTAAAAAAAAAAAATAGA  800

seq1  CCCAAATCCTTGCCTTATAAAATTTAAATTTTACTGATTCTTCTTTACTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCCTTGCCTTATAAAATTTAAATTTTACTGATTCTTCTTTACTA  850

seq1  ATGCTATTTCTTTGTGGTGTGTGTGTGTATGTGTGTGTG  888
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTTCTTTGTGGTGTGTGTGTGTATGTGTGTGTG  889

seq1: chr5_55758977_55760094
seq2: B6Ng01-004D16.g_63_1166 (reverse)

seq1  TTAAGCACACTGCAAGTTTTCCACCAGAAGATGTGCAAATTCCTAAGCAT  50
      ||||||| | |||||||||  ||    |||||| ||||  | ||||||||
seq2  TTAAGCA-ATTGCAAGTTTCACA----AAGATGGGCAA--TTCTAAGCAT  43

seq1  GGCACACAAACAAGCACCTATATAGGCATATGGTGACATCTTATTCTATG  100
       ||||||||||||||| ||||||| |||||  |||||||| |||||||||
seq2  -GCACACAAACAAGCA-CTATATA-GCATAATGTGACATC-TATTCTATG  89

seq1  GTGGTGCAATGCTTTCTGGCTG-TCTCACAAAGAATTTTGCTTTGCTGAT  149
      |||||||||||||||||||||| |||||| ||||| ||||||||||||||
seq2  GTGGTGCAATGCTTTCTGGCTGTTCTCAC-AAGAA-TTTGCTTTGCTGAT  137

seq1  TTAATGGCAGGTTAGATTGAGTCACATTTTTAACAAGTTCCCTTTCTGTA  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAATGGCAGGTTAGATTGAGTCACA-TTTTAACAAGTTCCCTTTCTGTA  186

seq1  ACCTTCCTGTTTTCATTCTCCAGGGCTTTCTTCTGGGCATGCATTTCCCA  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTGTTTTCA-TCTCCAGGGCTTTCTTCTGGGCATGCATTTCCCA  235

seq1  GAGAATATGTGTATGGTATAAAATGGTAATATTTTTTGATGCTGACTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATGTGTATGGTATAAAATGGTAATATTTTTTGATGCTGACTATT  285

seq1  CAGTCAGTAGTGTCACTTTTGAAAGCAGCCACTTGGTGTTGATAATCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTAGTGTCACTTTTGAAAGCAGCCACTTGGTGTTGATAATCCTG  335

seq1  TCTCTGCTTGGTTTCTTGAAATAGTGGGTAATGGATCGCTACTGCTGATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTGGTTTCTTGAAATAGTGGGTAATGGATCGCTACTGCTGATA  385

seq1  GTGAGAAATAAGAACAGGAGGCACAGGTTAAAATACTGGTAGTCCTTCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAATAAGAACAGGAGGCACAGGTTAAAATACTGGTAGTCCTTCCC  435

seq1  TGTGAGATGTCAGTATAGCCAAGACAGGTCGTGTCTTACTTCTGTTGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGTCAGTATAGCCAAGACAGGTCGTGTCTTACTTCTGTTGAAG  485

seq1  CCTTTCTAATTGTGTATGCAATATCTTTCACTGTATGAGAAATAAAATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTAATTGTGTATGCAATATCTTTCACTGTATGAGAAATAAAATCA  535

seq1  GCAATATGCTGGCTATCAAAAGTTTATTAGACTTTGTAGATTCAGTATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGCTGGCTATCAAAAGTTTATTAGACTTTGTAGATTCAGTATTT  585

seq1  TTAGAAACTGATTCTTTTTAATGTAGTCCTTGCTGGCCTTAATCTCATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACTGATTCTTTTTAATGTAGTCCTTGCTGGCCTTAATCTCATTG  635

seq1  TAAACTAAACTGGCAATGAAGCTCAGTAAGTTCTTCATGCCTCTGCCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAAACTGGCAATGAAGCTCAGTAAGTTCTTCATGCCTCTGCCTCC  685

seq1  CATTGCTGGAAATCTGCTTGAATTAAAGACACATGCCACTATATCTGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGGAAATCTGCTTGAATTAAAGACACATGCCACTATATCTGGCA  735

seq1  GATTATTGATTGCTTGGTTGATTGATTTTATTCCTATGTCCTATATTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTGATTGCTTGGTTGATTGATTTTATTCCTATGTCCTATATTTCA  785

seq1  TCTGGACAGCAGTTTCCTCTTCCTCCATTCCTCTTAGATACTCCCTTTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACAGCAGTTTCCTCTTCCTCCATTCCTCTTAGATACTCCCTTTAC  835

seq1  CCACTTCTCTTCCTTTTCCCTTCAGAAAAGACCAGGCTTCTCAGGGATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTCTTCCTTTTCCCTTCAGAAAAGACCAGGCTTCTCAGGGATAT  885

seq1  CAACCTAATGTGGCATAACAAGTTACAATAAGACTAGGCATGTACACTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAATGTGGCATAACAAGTTACAATAAGACTAGGCATGTACACTCA  935

seq1  GAACCACAATGCTGGAATAGACAACCCAGTTGGAGGAAATGGGTCACAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACAATGCTGGAATAGACAACCCAGTTGGAGGAAATGGGTCACAAG  985

seq1  TGCAGATTAAAATGTCACAGTTCCTACCCCATTCCTACAGTTAGGAGTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATTAAAATGTCACAGTTCCTACCCCATTCCTACAGTTAGGAGTTA  1035

seq1  CACAAGAATTCTCATTCCTGGCCATTCAGGCCCTGTCAGGCATGGACTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAATTCTCATTCCTGGCCATTCAGGCCCTGTCAGGCATGGACTCC  1085

seq1  CTCTGGTGGCATGGAATTC  1118
      |||||||||||||||||||
seq2  CTCTGGTGGCATGGAATTC  1104