BAC Information

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BAC

Clone NameB6Ng01-004E01
Chromosome5 (Build37)
Map Location 115,706,854 - 115,863,282
singlet/doubletdoublet
Overlap geneRnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
Upstream geneFoxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5
Downstream geneMsi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004E01.bB6Ng01-004E01.g
ACCDH841717DH841718
length8361,092
definitionDH841717|Mus musculus domesticus DNA, BAC clone: B6Ng01-004E01, 5' end.DH841718|Mus musculus domesticus DNA, BAC clone: B6Ng01-004E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,862,446 - 115,863,282)(115,706,854 - 115,707,954)
sequence
gaattcatcttaacaacaacaacaacaaaaaaaaaaaaaccaaaacacgg
taaagatgatttgaatcaggctatttaaagattgtctaaaagcattgata
gcagcattattcataaaagccagaaactagaaacactccaagtgtccatg
ggcaggggaacaagtaaagaataatattcttatgcaatggagtactacac
aaaaggagaaagaaaccgttgactggttcacacaatacagataaatctca
aaagcgatatgtttaaaacaaaagaagacatacacagacagacagacaga
caggcacacgcgcgcgcacacacacacacacacatacaccaaaaaaagag
aaagaaaagaaaacttgcaaaaaaaaaaaaaacctcaagtggactggagc
gatggctcagtggttaagagcactgactgctcttccagaggtcctgagtt
caattccaagcaaccacatagtggctcacaaccatctgtaatgggatccg
atgccctcttctggggtgtctgaagacagctacagtgtactcatataagt
aaataaatctagaaaaaaaaaaaaaaacctcaagtgtattttttatactt
tcatagtctggttaaaatcatttttactactttttttcttggttgctaag
atgtatctatatttacaggggaaaaaatccatatttatgttaacacaaaa
taagtccatttcgtcctctgctgccctatgctgatgggtttgtctgtcat
tatcgacctttctaggtactacctctatgtatagaaccacacatgatcag
tgtcatgatcagtgtcattgtgtgtgtgtgtgtgtg
gaattctccctcagaaaatgtgacagggggaagagaaggacactttcctt
tgtgttgctcccccctgactggttagatgaggtgtcctcctcacaatgtg
gtcccccttgccctctatggggtactcacttggcctgtagaaagagctcc
ttgttgaaaggcttgtgtccccacttgtttctcttcccccagccgccatg
cccactgccttcaaagtgacctgcctggccacgtggttcaaaggtgaaat
ttaacaagtggttcaggttgatcttcttagggccagagaactgggcaggg
ctaaactctgcccgctgagcctctgctacctagaaagaatgacagcattt
cagagtgaagaatttacccactgacagcagaaatcggcacagctccgctt
ccttcctcatggctgagaactgaacctcacctaagccgtgtggcagtgag
gacaggagacgctcccctagcatctgcatcccgactgtcccgtcgccctg
ctcagcagcactacagtgagagccctgccctgcacagccttctctagtca
cctagtagcaccaagaggaactcagccaataaactctccatagttccacc
ttcttttattggtggtatttactattgaacctggagtctcaggaatgcta
ggcaaaccttttacctctatgtcaaatccacacccacagctccaccccct
ccccccagcattggaacacacaggcaggtggatttaagttggaggccaac
cttggctacagtcaggactacacagaaaaaccttttctcaaaaaattaat
tgaaaacttcagtgcttatgcacaaggagcatgcatagcggtgagtgaag
gtgtccacgcacgcagatggggaaagtccccggagcttttgggagccagg
gttactgagttacagtacttgtgggctgccctctgtgggtgctgggaaat
caaactcagtctctgtaaaactcttctgtttggggctggtgagatgctca
aggtttaagagtcgtcaactgcctatccaagtcctgagtcaaatcccatc
aactaatggtgctaccacatctgtaatgagatctgaccctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115862446_115863282
seq2: B6Ng01-004E01.b_42_877 (reverse)

seq1  CACACACACACACACACAATTGACACTGATCATGACACTGATCATGTGTG  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACACACACACACACACAA-TGACACTGATCATGACACTGATCATGTGTG  49

seq1  GTTCTATACATAGAGGTAGTACCTAGAAAGGTCGATAATGACAGACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATACATAGAGGTAGTACCTAGAAAGGTCGATAATGACAGACAAAC  99

seq1  CCATCAGCATAGGGCAGCAGAGGACGAAATGGACTTATTTTGTGTTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCATAGGGCAGCAGAGGACGAAATGGACTTATTTTGTGTTAACA  149

seq1  TAAATATGGATTTTTTCCCCTGTAAATATAGATACATCTTAGCAACCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGGATTTTTTCCCCTGTAAATATAGATACATCTTAGCAACCAAG  199

seq1  AAAAAAAGTAGTAAAAATGATTTTAACCAGACTATGAAAGTATAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTAGTAAAAATGATTTTAACCAGACTATGAAAGTATAAAAAAT  249

seq1  ACACTTGAGGTTTTTTTTTTTTTTTCTAGATTTATTTACTTATATGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGAGGTTTTTTTTTTTTTTTCTAGATTTATTTACTTATATGAGTA  299

seq1  CACTGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCGGATCCCATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCGGATCCCATTAC  349

seq1  AGATGGTTGTGAGCCACTATGTGGTTGCTTGGAATTGAACTCAGGACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGAGCCACTATGTGGTTGCTTGGAATTGAACTCAGGACCTC  399

seq1  TGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCGCTCCAGTCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCGCTCCAGTCCACT  449

seq1  TGAGGTTTTTTTTTTTTTTGCAAGTTTTCTTTTCTTTCTCTTTTTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTTTTTTTTTTTTGCAAGTTTTCTTTTCTTTCTCTTTTTTTGGT  499

seq1  GTATGTGTGTGTGTGTGTGTGCGCGCGCGTGTGCCTGTCTGTCTGTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGTGTGTGTGTGTGCGCGCGCGTGTGCCTGTCTGTCTGTCTGT  549

seq1  CTGTGTATGTCTTCTTTTGTTTTAAACATATCGCTTTTGAGATTTATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGTCTTCTTTTGTTTTAAACATATCGCTTTTGAGATTTATCTG  599

seq1  TATTGTGTGAACCAGTCAACGGTTTCTTTCTCCTTTTGTGTAGTACTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGAACCAGTCAACGGTTTCTTTCTCCTTTTGTGTAGTACTCCA  649

seq1  TTGCATAAGAATATTATTCTTTACTTGTTCCCCTGCCCATGGACACTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAGAATATTATTCTTTACTTGTTCCCCTGCCCATGGACACTTGG  699

seq1  AGTGTTTCTAGTTTCTGGCTTTTATGAATAATGCTGCTATCAATGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTAGTTTCTGGCTTTTATGAATAATGCTGCTATCAATGCTTTT  749

seq1  AGACAATCTTTAAATAGCCTGATTCAAATCATCTTTACCGTGTTTTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCTTTAAATAGCCTGATTCAAATCATCTTTACCGTGTTTTGGTT  799

seq1  TTTTTTTTTTTGTTGTTGTTGTTGTTAAGATGAATTC  837
      |||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGTTGTTGTTGTTGTTAAGATGAATTC  836

seq1: chr5_115706854_115707954
seq2: B6Ng01-004E01.g_66_1157

seq1  GAATTCTCCCTCAGAAAATGTGACAGGGGGAAGAGAAGGACACTTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCAGAAAATGTGACAGGGGGAAGAGAAGGACACTTTCCTT  50

seq1  TGTGTTGCTCCCCCCTGACTGGTTAGATGAGGTGTCCTCCTCACAATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCTCCCCCCTGACTGGTTAGATGAGGTGTCCTCCTCACAATGTG  100

seq1  GTCCCCCTTGCCCTCTATGGGGTACTCACTTGGCCTGTAGAAAGAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCTTGCCCTCTATGGGGTACTCACTTGGCCTGTAGAAAGAGCTCC  150

seq1  TTGTTGAAAGGCTTGTGTCCCCACTTGTTTCTCTTCCCCCAGCCGCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAGGCTTGTGTCCCCACTTGTTTCTCTTCCCCCAGCCGCCATG  200

seq1  CCCACTGCCTTCAAAGTGACCTGCCTGGCCACGTGGTTCAAAGGTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCCTTCAAAGTGACCTGCCTGGCCACGTGGTTCAAAGGTGAAAT  250

seq1  TTAACAAGTGGTTCAGGTTGATCTTCTTAGGGCCAGAGAACTGGGCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGTGGTTCAGGTTGATCTTCTTAGGGCCAGAGAACTGGGCAGGG  300

seq1  CTAAACTCTGCCCGCTGAGCCTCTGCTACCTAGAAAGAATGACAGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCTGCCCGCTGAGCCTCTGCTACCTAGAAAGAATGACAGCATTT  350

seq1  CAGAGTGAAGAATTTACCCACTGACAGCAGAAATCGGCACAGCTCCGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAAGAATTTACCCACTGACAGCAGAAATCGGCACAGCTCCGCTT  400

seq1  CCTTCCTCATGGCTGAGAACTGAACCTCACCTAAGCCGTGTGGCAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCATGGCTGAGAACTGAACCTCACCTAAGCCGTGTGGCAGTGAG  450

seq1  GACAGGAGACGCTCCCCTAGCATCTGCATCCCGACTGTCCCGTCGCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGACGCTCCCCTAGCATCTGCATCCCGACTGTCCCGTCGCCCTG  500

seq1  CTCAGCAGCACTACAGTGAGAGCCCTGCCCTGCACAGCCTTCTCTAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGCACTACAGTGAGAGCCCTGCCCTGCACAGCCTTCTCTAGTCA  550

seq1  CCTAGTAGCACCAAGAGGAACTCAGCCAATAAACTCTCCATAGTTCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAGCACCAAGAGGAACTCAGCCAATAAACTCTCCATAGTTCCACC  600

seq1  TTCTTTTATTGGTGGTATTTACTATTGAACCTGGAGTCTCAGGAATGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTGGTGGTATTTACTATTGAACCTGGAGTCTCAGGAATGCTA  650

seq1  GGCAAACCTTTTACCTCTATGTCAAATCCACACCCACAGCTCCACCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACCTTTTACCTCTATGTCAAATCCACACCCACAGCTCCACCCCCT  700

seq1  CCCCCCAGCATTGGAACACACAGGCAGGTGGATTTAAGTTGGAGGCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGCATTGGAACACACAGGCAGGTGGATTTAAGTTGGAGGCCAAC  750

seq1  CTTGGCTACAGTCAGGACTACACAGAAAAACCTTTTCTCAAAAAATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTACAGTCAGGACTACACAGAAAAACCTTTTCTCAAAAAATTAAT  800

seq1  TGAAAACTTCAGTGCTTATGCACAAGGAGCATGCATAGCGGTGAGTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTTCAGTGCTTATGCACAAGGAGCATGCATAGCGGTGAGTGAAG  850

seq1  GTGTCCACGCACGCAGATGGGGAAAGTCCCCGGAGCTCTT-GGAGCCAGG  899
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  GTGTCCACGCACGCAGATGGGGAAAGTCCCCGGAGCTTTTGGGAGCCAGG  900

seq1  GTTACTGAGTTACAGGTACTTGTGGGCTGCCCTCTGTGGGTGCT-GGAAA  948
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  GTTACTGAGTTACA-GTACTTGTGGGCTGCCCTCTGTGGGTGCTGGGAAA  949

seq1  TCAAACTCAGGTCTCTGTAAGAACTC-TCTGTTTGGGGCTGGTGAGATGG  997
      ||||||||| |||||||||| ||||| ||||||||||||||||||||| |
seq2  TCAAACTCA-GTCTCTGTAA-AACTCTTCTGTTTGGGGCTGGTGAGAT-G  996

seq1  CTCAGGGTTTAAGAG-CGCCAACTGCCCTTCCAAAGGTCCTGAGTTCAAA  1046
      |||| |||||||||| || ||||||||  |||||  |||||||| |||||
seq2  CTCAAGGTTTAAGAGTCGTCAACTGCCTATCCAA--GTCCTGAG-TCAAA  1043

seq1  TCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGACAC  1096
      ||||| |||| | ||||| |||  ||  ||||||||||||||||||  ||
seq2  TCCCATCAACTA-ATGGT-GCTACCA--CATCTGTAATGAGATCTG--AC  1087

seq1  CCTCT  1101
      |||||
seq2  CCTCT  1092