BAC Information

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BAC

Clone NameB6Ng01-004F02
Chromosome5 (Build37)
Map Location 84,208,877 - 84,386,653
singlet/doubletdoublet
Overlap geneLOC231368
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneEpha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004F02.bB6Ng01-004F02.g
ACCDH841765DH841766
length1,0301,126
definitionDH841765|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F02, 5' end.DH841766|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,385,618 - 84,386,653)(84,208,877 - 84,210,012)
sequence
gaattctgatagtgttattagattcagattggatttggggaaatgtttac
aatgaagctgaaaataataagaatgataaaagattaaagttttaaaatat
gaccacgggagtctattttatcatattattgatggaaatcataattatag
ctcctccccaaagtagaaacagttctactatatgatccagcccttggtat
ttacctgaaggactataagtcaacattccatagagatatttgatcatccg
tatttattgcattattctcaatagaaaaattacagaacaaattcacctat
tcatcaacagagacacagagaaataagttgtagtttatacatacacaatg
atgattgatttgtctataagttttatatatatatataaacacatacacat
atgtgtgtgtgattttcataaatggtcattaattgagatattatattata
agaaatttcaaactaagaaagataaatataatattttcttttatctatgg
acttcagtttacagagctacataaaatcatgtatgcatgtatgtatgtag
gtaggtatgtatgtatctatgaacataaaagggtaagaaactgtgaatga
aatggagacaagaaggagaggcatggaagagaaagaatggactagggagg
cagtaaaatatggtcaaaatacagtatatactcatatggaaaaatactca
tgaaagatagtattttatttaaaaaaaacactgtgcatctgtattaacac
acatgtatgtggatgggaacaaatgcacttttgtgactgtgaattccaga
agtcaatctcaggtgtcctttcttcaggatagtgttgcatgttgcttgtt
gagacgatctgtcattagaacttaacgttactgattagataggctggctg
gctaggagcaaaagagagactctctcttcaatgtctcaactgggcaggga
taaataatacaattatactgccatgggattttagcatcagttaaatagta
gaaattcaggattcatgactactcagctaa
gaattctgtcatgcaccatattctcattcatttactgtgggtttctgttg
attgccactcaaaggattcttaccaaaaattattttttaaaacaaatgtt
aacaagtaaaatcttttacacgttttcctatgattatttaaatactttct
tgattgtatgaagacatataggtagatattaaaaacatgaagcatctaga
tcctaaagattattataaaatattttaagcccttcaaagatactaaattc
aataatataactatatcattccagaaatatgttgaggaattatttttatc
attttcatttaataaaaggttatattatctttggctcagtgtttagtacc
acatttccctgaagcatcactcttctctccccatgaaaagaataatccag
gactcagaataaaattccataactgatcaaaagagaaagttaaaagcaag
aatatctgaatgtggtaaagtaaaagcaaactcagaatcatggtcaagaa
gattgtcagaggaaaaaaagaaagaattatgactaattcaagattagaat
tgagggaaaattgttcaaagataggaactgacaggagtaatcaaactaca
gaaataatgatgtttaaaaaagaaatatgctgaattaattatttgccttg
ttgttctgagaacaggacctaagaaaaagcaacttaagggggtgtgctta
ggctcacagtgagggacactattcaccatggcagagaatcacaggggcag
gatcctgaacagctgttctcttcagatcctccaggaggactagaaagaca
tgattgctggtgctaatattgctttccttttttgattcggctcaggactc
atagattgttaccacatgcatggaaaggggtcagtccactccactatgtt
gtgttaggtagctgaaggcattattttgactaaaattctttcatctgttt
tattttctggccttcttttctaatgtaagacttgggatcttgatcattct
atgcagcaaataactagatgtgtagtattctaagattatggataatgggt
atgtgatgcatctaaaaaactaattactgatacttggcaaagtactatta
acatagaataacagggaaaaaattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84385618_84386653
seq2: B6Ng01-004F02.b_48_1077 (reverse)

seq1  TTAGCTGAGTAATCATGAAATCCTGAATTCTAACTATATAACTGATGCTA  50
      ||||||||||| ||||| |||||||||||   ||||| ||||||||||||
seq2  TTAGCTGAGTAGTCATG-AATCCTGAATTTCTACTATTTAACTGATGCTA  49

seq1  AAATCCCATGGCATGTATAATGGTATTAATTTATCCCTGCCCAGTTGAGA  100
      ||||||||||||| ||||||| ||||| ||||||||||||||||||||||
seq2  AAATCCCATGGCA-GTATAATTGTATT-ATTTATCCCTGCCCAGTTGAGA  97

seq1  CATTGAAGAGAGAAGTCTCTCTTTTGCTTCCTAGCCAGCCAGCCTATCTT  150
      |||||||||||| |||||||||||||| |||||||||||||||||||| |
seq2  CATTGAAGAGAG-AGTCTCTCTTTTGC-TCCTAGCCAGCCAGCCTATC-T  144

seq1  AATCAGTAAACGTTAAGTTCTAATGACAGATCGTCTCAACAAGCAACATG  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGT-AACGTTAAGTTCTAATGACAGATCGTCTCAACAAGCAACATG  193

seq1  CAACACTATCCTGAAG-AAGGACACCTGAGATTGACTTCTGGAATTCACA  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAACACTATCCTGAAGAAAGGACACCTGAGATTGACTTCTGGAATTCACA  243

seq1  GTCACAAAAGTGCATTTGTTCCCATCCACATACATGTGTGTTAATACAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAAAGTGCATTTGTTCCCATCCACATACATGTGTGTTAATACAGA  293

seq1  TGCACAGTGTTTTTTTTAAATAAAATACTATCTTTCATGAGTATTTTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGTTTTTTTTAAATAAAATACTATCTTTCATGAGTATTTTTCC  343

seq1  ATATGAGTATATACTGTATTTTGACCATATTTTACTGCCTCCCTAGTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTATATACTGTATTTTGACCATATTTTACTGCCTCCCTAGTCCA  393

seq1  TTCTTTCTCTTCCATGCCTCTCCTTCTTGTCTCCATTTCATTCACAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCTTCCATGCCTCTCCTTCTTGTCTCCATTTCATTCACAGTTT  443

seq1  CTTACCCTTTTATGTTCATAGATACATACATACCTACCTACATACATACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCTTTTATGTTCATAGATACATACATACCTACCTACATACATACA  493

seq1  TGCATACATGATTTTATGTAGCTCTGTAAACTGAAGTCCATAGATAAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACATGATTTTATGTAGCTCTGTAAACTGAAGTCCATAGATAAAAG  543

seq1  AAAATATTATATTTATCTTTCTTAGTTTGAAATTTCTTATAATATAATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATATTTATCTTTCTTAGTTTGAAATTTCTTATAATATAATAT  593

seq1  CTCAATTAATGACCATTTATGAAAATCACACACACATATGTGTATGTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTAATGACCATTTATGAAAATCACACACACATATGTGTATGTGTT  643

seq1  TATATATATATATAAAACTTATAGACAAATCAATCATCATTGTGTATGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATAAAACTTATAGACAAATCAATCATCATTGTGTATGTA  693

seq1  TAAACTACAACTTATTTCTCTGTGTCTCTGTTGATGAATAGGTGAATTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACAACTTATTTCTCTGTGTCTCTGTTGATGAATAGGTGAATTTG  743

seq1  TTCTGTAATTTTTCTATTGAGAATAATGCAATAAATACGGATGATCAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATTTTTCTATTGAGAATAATGCAATAAATACGGATGATCAAAT  793

seq1  ATCTCTATGGAATGTTGACTTATAGTCCTTCAGGTAAATACCAAGGGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATGGAATGTTGACTTATAGTCCTTCAGGTAAATACCAAGGGCTG  843

seq1  GATCATATAGTAGAACTGTTTCTACTTTGGGGAGGAGCTATAATTATGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATAGTAGAACTGTTTCTACTTTGGGGAGGAGCTATAATTATGAT  893

seq1  TTCCATCAATAATATGATAAAATAGACTCCCGTGGTCATATTTTAAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAATAATATGATAAAATAGACTCCCGTGGTCATATTTTAAAACT  943

seq1  TTAATCTTTTATCATTCTTATTATTTTCAGCTTCATTGTAAACATTTCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTTATCATTCTTATTATTTTCAGCTTCATTGTAAACATTTCCC  993

seq1  CAAATCCAATCTGAATCTAATAACACTATCAGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAATCTGAATCTAATAACACTATCAGAATTC  1030

seq1: chr5_84208877_84210012
seq2: B6Ng01-004F02.g_70_1195

seq1  GAATTCTGTCATGCACCATATTCTCATTCATTTACTGTGGGTTTCTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATGCACCATATTCTCATTCATTTACTGTGGGTTTCTGTTG  50

seq1  ATTGCCACTCAAAGGATTCTTACCAAAAATTATTTTTTAAAACAAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCACTCAAAGGATTCTTACCAAAAATTATTTTTTAAAACAAATGTT  100

seq1  AACAAGTAAAATCTTTTACACGTTTTCCTATGATTATTTAAATACTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTAAAATCTTTTACACGTTTTCCTATGATTATTTAAATACTTTCT  150

seq1  TGATTGTATGAAGACATATAGGTAGATATTAAAAACATGAAGCATCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTATGAAGACATATAGGTAGATATTAAAAACATGAAGCATCTAGA  200

seq1  TCCTAAAGATTATTATAAAATATTTTAAGCCCTTCAAAGATACTAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGATTATTATAAAATATTTTAAGCCCTTCAAAGATACTAAATTC  250

seq1  AATAATATAACTATATCATTCCAGAAATATGTTGAGGAATTATTTTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATAACTATATCATTCCAGAAATATGTTGAGGAATTATTTTTATC  300

seq1  ATTTTCATTTAATAAAAGGTTATATTATCTTTGGCTCAGTGTTTAGTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTAATAAAAGGTTATATTATCTTTGGCTCAGTGTTTAGTACC  350

seq1  ACATTTCCCTGAAGCATCACTCTTCTCTCCCCATGAAAAGAATAATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCCTGAAGCATCACTCTTCTCTCCCCATGAAAAGAATAATCCAG  400

seq1  GACTCAGAATAAAATTCCATAACTGATCAAAAGAGAAAGTTAAAAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAATAAAATTCCATAACTGATCAAAAGAGAAAGTTAAAAGCAAG  450

seq1  AATATCTGAATGTGGTAAAGTAAAAGCAAACTCAGAATCATGGTCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGAATGTGGTAAAGTAAAAGCAAACTCAGAATCATGGTCAAGAA  500

seq1  GATTGTCAGAGGAAAAAAAGAAAGAATTATGACTAATTCAAGATTAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCAGAGGAAAAAAAGAAAGAATTATGACTAATTCAAGATTAGAAT  550

seq1  TGAGGGAAAATTGTTCAAAGATAGGAACTGACAGGAGTAATCAAACTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAAATTGTTCAAAGATAGGAACTGACAGGAGTAATCAAACTACA  600

seq1  GAAATAATGATGTTTAAAAAAGAAATATGCTGAATTAATTATTTGCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATGATGTTTAAAAAAGAAATATGCTGAATTAATTATTTGCCTTG  650

seq1  TTGTTCTGAGAACAGGACCTAAGAAAAAGCAACTTAAGGGGGTGTGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGAGAACAGGACCTAAGAAAAAGCAACTTAAGGGGGTGTGCTTA  700

seq1  GGCTCACAGTGAGGGACACTATTCACCATGGCAGAGAATCACAGGGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAGTGAGGGACACTATTCACCATGGCAGAGAATCACAGGGGCAG  750

seq1  GATCCTGAACAGCTGTTCTCTTCAGATCCTCCAGGAGGACTAGAAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAACAGCTGTTCTCTTCAGATCCTCCAGGAGGACTAGAAAGACA  800

seq1  TGATTGCTGGTGCTAATATTGCTTTCCTTTTTTGATTCGGCTCAGGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTGGTGCTAATATTGCTTTCCTTTTTTGATTCGGCTCAGGACTC  850

seq1  ATAGATTGTTACCACATGCATGGAAAGGGGTCAGTCCACTCCACTATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGTTACCACATGCATGGAAAGGGGTCAGTCCACTCCACTATGTT  900

seq1  GTGTTAGGTAGCTG-AGGCA-TATTTTGACTTAAAATTCTTTCATCTGTT  948
      |||||||||||||| ||||| ||||||||| |||||||||||||||||||
seq2  GTGTTAGGTAGCTGAAGGCATTATTTTGAC-TAAAATTCTTTCATCTGTT  949

seq1  TTATTTTCTTGCCTTCTTTTTCTAATGTAAGACTT-GGATCTTGATCATT  997
      ||||||||| |||||| |||||||||||||||||| ||||||||||||||
seq2  TTATTTTCTGGCCTTC-TTTTCTAATGTAAGACTTGGGATCTTGATCATT  998

seq1  CTATGCAGCAAATAAACTAGATGGTGTTAGTTATTCTAAGATTAT-GATA  1046
      ||||||||||||| |||||||| ||| ||| |||||||||||||| ||||
seq2  CTATGCAGCAAAT-AACTAGAT-GTG-TAG-TATTCTAAGATTATGGATA  1044

seq1  AT-GGTATGTGATGCATCTTAAAAAAACTAAATTACTGATACTTGCCAAA  1095
      || ||||||||||||||||  |||||||| ||||||||||||||| ||||
seq2  ATGGGTATGTGATGCATCT--AAAAAACT-AATTACTGATACTTGGCAAA  1091

seq1  GTAATTAAATAAACATAAGGAATAACAGGGAAAAAAATTGA  1136
      ||| |   || ||||||  ||||||||||| ||||||||||
seq2  GTACT---ATTAACATA--GAATAACAGGG-AAAAAATTGA  1126