BAC Information

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BAC

Clone NameB6Ng01-004F18
Chromosome5 (Build37)
Map Location 18,710,709 - 18,835,786
singlet/doubletdoublet
Overlap gene4921504A21Rik, Magi2
Upstream geneGnai1, LOC100041818, LOC668167
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004F18.bB6Ng01-004F18.g
ACCDH841790DH841791
length1,1691,103
definitionDH841790|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F18, 5' end.DH841791|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,710,709 - 18,711,887)(18,834,866 - 18,835,786)
sequence
gaattcaacctagggtcttaagtttcttgttggtgaagtagttataacac
ttccttcgccctaatttgaggctgtgtgcataaaaatggttcttagcaat
cagaaagcagaataaaggacaaagtttgactctatgagatgatttgtctc
tgataaaggaaaagaggaaaccaaaattcaattgctcatcatattatgct
taaaataaatgcaccattatactatactaatggagtatatgtatatgaga
aaatgagatttattgcattattaaaaatgacgtcataaaatttacttcaa
agcctagtagttaaaatatcataaagggtcacctataccaaaataaagca
aaacactctaaatatttttctgcaatttcagggacactcttaggtgcctg
tgcatccttcaaaccaattcactcaaatggctgcttcctgctttgatgga
cacaactgtaatgcatttatgctcgtgaaatagaagtccagctctgctac
tgaactttataataattatcttctaaacctgaagaatggagaaagaaaat
ctgggtccctctgcctttcattttcctccctcttctaggccagattttat
cttcatgcttgtacaacatcaaggccacaccatagctccttcttgagcgt
ccatggagaggtagagaaatagaaaggaacaaaagaggagtttgcttaag
acaagaaaaaatcattcccatcccattgagtttgtttctcggcctccatt
aaagctcatgcctcctctgttggaatgagaaccaacgtgagggctttgcc
taaactctctctattcttagcagaaaccctatccagaaaggaaggaaagt
ggagagtagagtccatgaaactgatagagctgtctaaagattccttgacc
acagaatgctgtttattagaaccagtgaatttggctgactatatttctat
ggcagtgatgaatgtcaatacttactcattttcttatacttgagacttaa
tttttcatgggtagcctcctgcaacagacttcatacttcatttcatggat
tatatagggagaatgaggatcggtatagtaacttttacaactaaaacatt
ttacccaccctcattaaacgatattcttcttggaaacattacttttcatg
gcttggactgatttgcaaa
gaattcaaatcaatccattcctatctccttgtactaaggtcaaatctaag
tggatcaaggacctccacataaaaccagagacactgaaagttatggagga
aaaagttgggaaaagcttcgaagatatgggtgcagggggaaaattcctga
atagaacagcaatggcttgtgctgtaagatcaagaattgacaaatgaaaa
ttcttagtatcagtcaaatatcaaagtaaggcatgaaacgagaatcagag
gaacaaacatcttaaaagaaaagaaataaataaaaactgaacaaacagca
aatacagtgagcttatcaataggtatgtcaatataaatacagaaattcaa
atgcccggagggcacagtggagacacatatataagtttatgtcacttatg
aggcactcattttaaaataaggtgcacaggaggtgaaggaaaatggatta
gagaagacggatcttgaaaactttagtgttgaacagcaggagtcacatta
ctatttcacaacattaggctttggcaaaaaataaaagattattgtcagac
aatgagggtgattgtgaagcgacaataggatcattctatcaagaggaaac
aaatatcctttttcatcagtcaggagtcaaaatgtattaatagaagctga
ctgaatttcaaacagagacggacacattcacagatacaatgttcattcaa
ttagcagtatataaatgatgtgtgtgtgtccctctgtgaatgcatgtgtg
tctccatatatgtatgtacccatgtgtttgtgttaatgcctgggtttgtg
tgcttttgtgtgtttaagtgactgtgttgcaccttcaaatgtatgtgtct
gtgttcctatgtgtgtgtgtctgtgtgttcctttgtgaatttgagtgcct
gtatgagtgtgactgtgtgttcccttcatgtgtgtgtgtgtatgtgtgtg
tgacacggtgtatgtgacagaacagtacattaaatttatactaggcatac
tcaagctgtaacctgctagtatcttttggagacctaaagactacctatta
gctaaattagagacaagaaattagtccttctacgaatatattcaacggaa
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18710709_18711887
seq2: B6Ng01-004F18.b_46_1214

seq1  GAATTCAACCTAGGGTCTTAAGTTTCTTGTTGGTGAAGTAGTTATAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTAGGGTCTTAAGTTTCTTGTTGGTGAAGTAGTTATAACAC  50

seq1  TTCCTTCGCCCTAATTTGAGGCTGTGTGCATAAAAATGGTTCTTAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCGCCCTAATTTGAGGCTGTGTGCATAAAAATGGTTCTTAGCAAT  100

seq1  CAGAAAGCAGAATAAAGGACAAAGTTTGACTCTATGAGATGATTTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCAGAATAAAGGACAAAGTTTGACTCTATGAGATGATTTGTCTC  150

seq1  TGATAAAGGAAAAGAGGAAACCAAAATTCAATTGCTCATCATATTATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGGAAAAGAGGAAACCAAAATTCAATTGCTCATCATATTATGCT  200

seq1  TAAAATAAATGCACCATTATACTATACTAATGGAGTATATGTATATGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATGCACCATTATACTATACTAATGGAGTATATGTATATGAGA  250

seq1  AAATGAGATTTATTGCATTATTAAAAATGACGTCATAAAATTTACTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGATTTATTGCATTATTAAAAATGACGTCATAAAATTTACTTCAA  300

seq1  AGCCTAGTAGTTAAAATATCATAAAGGGTCACCTATACCAAAATAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGTAGTTAAAATATCATAAAGGGTCACCTATACCAAAATAAAGCA  350

seq1  AAACACTCTAAATATTTTTCTGCAATTTCAGGGACACTCTTAGGTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCTAAATATTTTTCTGCAATTTCAGGGACACTCTTAGGTGCCTG  400

seq1  TGCATCCTTCAAACCAATTCACTCAAATGGCTGCTTCCTGCTTTGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTTCAAACCAATTCACTCAAATGGCTGCTTCCTGCTTTGATGGA  450

seq1  CACAACTGTAATGCATTTATGCTCGTGAAATAGAAGTCCAGCTCTGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGTAATGCATTTATGCTCGTGAAATAGAAGTCCAGCTCTGCTAC  500

seq1  TGAACTTTATAATAATTATCTTCTAAACCTGAAGAATGGAGAAAGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTATAATAATTATCTTCTAAACCTGAAGAATGGAGAAAGAAAAT  550

seq1  CTGGGTCCCTCTGCCTTTCATTTTCCTCCCTCTTCTAGGCCAGATTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCCTCTGCCTTTCATTTTCCTCCCTCTTCTAGGCCAGATTTTAT  600

seq1  CTTCATGCTTGTACAACATCAAGGCCACACCATAGCTCCTTCTTGAGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCTTGTACAACATCAAGGCCACACCATAGCTCCTTCTTGAGCGT  650

seq1  CCATGGAGAGGTAGAGAAATAGAAAGGAACAAAAGAGGAGTTTGCTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGAGGTAGAGAAATAGAAAGGAACAAAAGAGGAGTTTGCTTAAG  700

seq1  ACAAGAAAAAATCATTCCCATCCCATTGAGTTTGTTTCTCGGCCTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAAATCATTCCCATCCCATTGAGTTTGTTTCTCGGCCTCCATT  750

seq1  AAAGCTCATGCCTCCTCTGTTGGAATGAGAACCAACGTGAGGGCTTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATGCCTCCTCTGTTGGAATGAGAACCAACGTGAGGGCTTTGCC  800

seq1  TAAACTCTCTCTATTCTTAGCAGAAACCCTATCCAGAAAGGAAAGGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAACTCTCTCTATTCTTAGCAGAAACCCTATCCAGAAAGG-AAGGAAAG  849

seq1  TGGAGAGTAGAGTCCATGAAACTGATAGAGCTGTCTAAAGATTCCTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTAGAGTCCATGAAACTGATAGAGCTGTCTAAAGATTCCTTGAC  899

seq1  CACAGAATGCTGTTTAATTAGAACCAGTGAATTTGGCTGACTATATTTCT  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACAGAATGCTGTTT-ATTAGAACCAGTGAATTTGGCTGACTATATTTCT  948

seq1  ATGGCAGTGATGAATGTCAATACTTACTCATTTTTCTTATACTTGAGAAC  1000
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  ATGGCAGTGATGAATGTCAATACTTACTCA-TTTTCTTATACTTGAG-AC  996

seq1  TTAATTTTTCATGGGTAG-CTCCTGCAACAGACTTCATACTTCATTTCAT  1049
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAATTTTTCATGGGTAGCCTCCTGCAACAGACTTCATACTTCATTTCAT  1046

seq1  GGATTATATTAGTGAGAATGA-GATCGTTATAGTAACTTTTACATACTAA  1098
      |||||||| ||| |||||||| ||||| |||||||||||||||| |||||
seq2  GGATTATA-TAGGGAGAATGAGGATCGGTATAGTAACTTTTACA-ACTAA  1094

seq1  AACATTTTTACACA-CCTCATTTAAAACGATAATCTTCTTTGGAAAACAT  1147
      |||| |||||| || |||||||  |||||||| |||||||  | ||||| 
seq2  AACA-TTTTACCCACCCTCATT--AAACGATATTCTTCTT--GGAAACA-  1138

seq1  TTACTTTTTCATGCATAGGACTGATTTGCAAA  1179
      |||| ||||||||  | |||||||||||||||
seq2  TTAC-TTTTCATGGCTTGGACTGATTTGCAAA  1169

seq1: chr5_18834866_18835786
seq2: B6Ng01-004F18.g_251_1170 (reverse)

seq1  CAATTCAGTTGAATATATTTGT-GAAGGCCTAATTTCTTGTTCTCT-ATT  48
      |||||| |||||||||||| || ||||| ||||||||||| ||||| |||
seq2  CAATTCCGTTGAATATATTCGTAGAAGGACTAATTTCTTG-TCTCTAATT  49

seq1  TTGCTAATTTGTGAGTCTCTAGGTCTCC-AAAGATACTAAGCAGGTTTAC  97
      | ||||||  || ||||| ||||||||| ||||||||| |||||| ||||
seq2  TAGCTAATAGGT-AGTCTTTAGGTCTCCAAAAGATACT-AGCAGG-TTAC  96

seq1  AGCTTGAGTTATG-CTAGTTATAAATTTAATGTACTGTTCTGTCCACTAC  146
      |||||||| |||| |||| |||||||||||||||||||||||||   |||
seq2  AGCTTGAG-TATGCCTAG-TATAAATTTAATGTACTGTTCTGTCACATAC  144

seq1  A-CATGTACACACACACATACACACACACACATGAA-GGAACACACAGTC  194
      | | ||| |||||||||||||||||||||||||||| |||||||||||||
seq2  ACCGTGT-CACACACACATACACACACACACATGAAGGGAACACACAGTC  193

seq1  ACACTCATACAGGCACTCAAATTCACAAAGGAACACACAGACACACACAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATACAGGCACTCAAATTCACAAAGGAACACACAGACACACACAC  243

seq1  ATAGGAACACAGAACACATACATTTGAAGGTGC-ACACAGTCACTTAAAC  293
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  ATAGGAACACAG-ACACATACATTTGAAGGTGCAACACAGTCACTTAAAC  292

seq1  ACACAAAAGCACACAAACCCAGGCATTAACACAAACACATGGGTACATAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGCACACAAACCCAGGCATTAACACAAACACATGGGTACATAC  342

seq1  ATATATGGAGACACACATGCATTCACAGAGGGACACACACACATCATTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGAGACACACATGCATTCACAGAGGGACACACACACATCATTTA  392

seq1  TATACTGCTAATTGAATGAACATTGTATCTGTGAATGTGTCCGTCTCTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGCTAATTGAATGAACATTGTATCTGTGAATGTGTCCGTCTCTGT  442

seq1  TTGAAATTCAGTCAGCTTCTATTAATACATTTTGACTCCTGACTGATGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTCAGTCAGCTTCTATTAATACATTTTGACTCCTGACTGATGAA  492

seq1  AAAGGATATTTGTTTCCTCTTGATAGAATGATCCTATTGTCGCTTCACAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATATTTGTTTCCTCTTGATAGAATGATCCTATTGTCGCTTCACAA  542

seq1  TCACCCTCATTGTCTGACAATAATCTTTTATTTTTTGCCAAAGCCTAATG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCATTGTCTGACAATAATCTTTTATTTTTTGCCAAAGCCTAATG  592

seq1  TTGTGAAATAGTAATGTGACTCCTGCTGTTCAACACTAAAGTTTTCAAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATAGTAATGTGACTCCTGCTGTTCAACACTAAAGTTTTCAAGA  642

seq1  TCCGTCTTCTCTAATCCATTTTCCTTCACCTCCTGTGCACCTTATTTTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTTCTCTAATCCATTTTCCTTCACCTCCTGTGCACCTTATTTTAA  692

seq1  AATGAGTGCCTCATAAGTGACATAAACTTATATATGTGTCTCCACTGTGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGCCTCATAAGTGACATAAACTTATATATGTGTCTCCACTGTGC  742

seq1  CCTCCGGGCATTTGAATTTCTGTATTTATATTGACATACCTATTGATAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGGGCATTTGAATTTCTGTATTTATATTGACATACCTATTGATAAG  792

seq1  CTCACTGTATTTGCTGTTTGTTCAGTTTTTATTTATTTCTTTTCTTTTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTATTTGCTGTTTGTTCAGTTTTTATTTATTTCTTTTCTTTTAA  842

seq1  GATGTTTGTTCCTCTGATTCTCGTTTCATGCCTTACTTTGATATTTGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGTTCCTCTGATTCTCGTTTCATGCCTTACTTTGATATTTGACT  892

seq1  GATACTAAGAATTTTCATTTGTCAATTC  921
      ||||||||||||||||||||||||||||
seq2  GATACTAAGAATTTTCATTTGTCAATTC  920