BAC Information

Click to search

BAC

Clone NameB6Ng01-004H06
Chromosome5 (Build37)
Map Location 56,819,036 - 56,819,648
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H06.bB6Ng01-004H06.g
ACCDH841859DH841860
length1,162609
definitionDH841859|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H06, 5' end.DH841860|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttgagcatccttaatcatcagggaaatgcaaatataaacaaccctgagat
tccatctcacaccagtcagaatggctaagattaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcctgtacaaccactctggttataagtctggtggttcctca
gaaaattggacatagtactactggaggatacagcaatacctctcctgggc
atatatcccgaagatgttccaactgataagaaagacacatgctccactat
gttcatagcagctttatttataatagccagaagctggaaagaacccagat
gcccctcaactgaggaatggatacagaaaatatggtacatttacacaata
gaatactactcagctaataaaaataatgaatttatgaaattcctagacaa
atggatggacctggaaggcatcatcctgagtgaggttacccaatcacaaa
ggaactcacaaaatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatataagatacaatttgggaaacacatgaaactcaa
gaataacaaagaccaaaatgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagttttgagctcagacg
aaaggatggaccatcgagagactgccatatccagggatccaccccataat
cagcctccaaacgctgacaccattgcatacactagcaagattttatcgaa
aggacccacatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggattacagggccccatgaa
ggctctagagaaagtacccaagagctaaagggactgcaccctatagtgac
aacatatgactacagtacccagagctcttgactctagctgcatatgtatc
aaagatggcctagtcgcatcactgcaaggaagccatgtcatgcaacttta
tttgctcagtaagggaacatcagcaaaaagtgaagaggtgtttatatggt
gagtggggggcc
gaattctttatctctggacttattcctagcttgatttcctcaagagcaca
tttaagattccccttacatattaaatttaatacttacttttggtaaagtt
gatgggataatagcctccttgtaatgttaaatgtggctatcagcgtgctt
tgattagacaacatatgtttctgtttaatttctgaggtccataacaacac
atagattcaaagtagtgtgtactgatcttacctgcttggtttgtttgttt
gtttgtttgttttgctttgctttttgtagtttaaaaaattattctttaat
catttttacagtccaaactttatccccctttcagtctggcctgtgataat
tcctcattccatagctccttccttccctcacccctacttccccaccctat
gtccaagaggatgtccccgccccccacccccaccccactagacatctcca
ctccctggggcctcagtttcttgaggggtaggggtatcttctctcacatt
ttccacatttccttggaaaatgaaaaaggctaaaaatattgaaatgctgc
cgctttgcacctaagcccgcatttatttagaaaacctttgattttcaaag
gcttaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56819036_56819648
seq2: B6Ng01-004H06.g_69_677 (reverse)

seq1  GTCCTAAGCCTCTG-AAATACAAGTGTTTCTATATAAATGCTGTGCTCAG  49
      ||||||||||| || ||||  |||  |||||| |||||||| | ||| ||
seq2  GTCCTAAGCCTTTGAAAATCAAAGGTTTTCTAAATAAATGC-GGGCTTAG  49

seq1  CTGCAAAGCAGCAGCATTTCAATAATCTTAGCCTTTTCTCATTCTCCAAG  99
       |||||||| |||||||||||||| | |||||||||| ||||| ||||||
seq2  GTGCAAAGCGGCAGCATTTCAATATTTTTAGCCTTTT-TCATTTTCCAAG  98

seq1  GAAATGTTGGAAAACTGTGAGAGAAGATACACCTAACCCTCAAGAAACTT  149
      |||||| ||||||| ||||||||||||||| |||| |||||||||||| |
seq2  GAAATG-TGGAAAA-TGTGAGAGAAGATACCCCTACCCCTCAAGAAAC-T  145

seq1  GAGGCCCCAGGGAGTGGAGATGTCTAGTGGGGTGGGGGTGGGGGGCGGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCAGGGAGTGGAGATGTCTAGTGGGGTGGGGGTGGGGGGCGGGG  195

seq1  ACATCCTCTTGGACATAGGGTGGGGAAGTAGGGGTGAGGGAAGGAAGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCTTGGACATAGGGTGGGGAAGTAGGGGTGAGGGAAGGAAGGAG  245

seq1  CTATGGAATGAGGAATTATCACAGGCCAGACTGAAAGGGGGATAAAGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAATGAGGAATTATCACAGGCCAGACTGAAAGGGGGATAAAGTTT  295

seq1  GGACTGTAAAAATGATTAAAGAATAATTTTTTAAACTACAAAAAGCAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAAAAATGATTAAAGAATAATTTTTTAAACTACAAAAAGCAAAG  345

seq1  CAAAACAAACAAACAAACAAACAAACCAAGCAGGTAAGATCAGTACACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAACAAACAAACAAACAAACCAAGCAGGTAAGATCAGTACACAC  395

seq1  TACTTTGAATCTATGTGTTGTTATGGACCTCAGAAATTAAACAGAAACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGAATCTATGTGTTGTTATGGACCTCAGAAATTAAACAGAAACAT  445

seq1  ATGTTGTCTAATCAAAGCACGCTGATAGCCACATTTAACATTACAAGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCTAATCAAAGCACGCTGATAGCCACATTTAACATTACAAGGAG  495

seq1  GCTATTATCCCATCAACTTTACCAAAAGTAAGTATTAAATTTAATATGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATCCCATCAACTTTACCAAAAGTAAGTATTAAATTTAATATGTA  545

seq1  AGGGGAATCTTAAATGTGCTCTTGAGGAAATCAAGCTAGGAATAAGTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATCTTAAATGTGCTCTTGAGGAAATCAAGCTAGGAATAAGTCCA  595

seq1  GAGATAAAGAATTC  613
      ||||||||||||||
seq2  GAGATAAAGAATTC  609