BAC Information

Click to search

BAC

Clone NameB6Ng01-004K13
Chromosome5 (Build37)
Map Location 40,178,984 - 40,320,247
singlet/doubletdoublet
Overlap geneEG665839
Upstream geneClnk, LOC384174, Hs3st1
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004K13.bB6Ng01-004K13.g
ACCDH842008DH842009
length7411,043
definitionDH842008|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K13, 5' end.DH842009|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,319,507 - 40,320,247)(40,178,984 - 40,180,038)
sequence
gaattcagttagtcctttcctggaactcaccctgtagaccaggctggcct
cgaactcagaaatctgcctgcctcagcctcccaactgctgggattaaagg
catatgccaccatgcccggcttcagttagtcctttcaaagctccctgaga
agtttaccatctagaatggacttcagccacttcaagctaatgaatacata
gttctgcaatatcttattacttatatgaatctagattgtggtttaaaaat
ccacatatgatcatgatttaattctattatcttcaaaatgtcactttaag
acaaagctactataagttttgcatgttcttgcaaatacattgaccttatt
gccattgtgggccagaagatgagtatgcagttcctccaactttccctttc
attttatcttggaccaaatggacactcttgtgaggtgatgcaatcagatt
cttctaaagtccacatacatcatagactttgtaacaagcacagatgtgat
cccttgttttgctgagggattctaggttttattttattttctaatacctc
agtttatccctgctatcctctactttacattctgctcaattagaaatgat
ttactctagctgcatatgtagcagaagatggcctagttggccatctttgg
gaagagaggccccttggtcttgcaaactttatatgcctcagtacaaggga
acaccagggccaagaagtaggagtgggtggggagggtatgg
gaattcctcatagagttcttgatgactatgtgtatgatttaatatttagc
taaaggatttaatctgagtatgaaggtggcaaaagttctgcacatgaata
tggagaatgtaaatatatcttcccttgaaaataatcaaggtcgaaagatt
gatctcattgagacattttgtttgcctcagagaaatcttatataaaatca
aatcataatttctatttggtcgtaaatggtgacacaaaacactgctagtt
ttaaatcttaggactcaatgaaaaacactaaggtgctcactgcttgcagc
taaggtgctcagtgctctgaactgcagctttaaatattcagaagcctctg
tgccattccttccatgcaaaaatcgtctccatatccattccattttttag
caacattctactctcatttgtcaccctcttctttatttttaattataata
cacgaaactgactgcattcactgtgcttttctgtagtgtattaagctatg
atgctgctgatgctgagggttcagaagccgtctaacatcctgaactccac
tgcagaaccctccctgtcccataagctggctcttcagcagacatctcttt
ttacttccttttctacattttaaaatagtacttctttatgtaaagtataa
atatagcaatgtggttaaacctagagaaaaaaaaaaggctcagagtggga
attcactaatatcaacttaaaagaaaatcaaatatgtcaatcatccagaa
acatttttcagtataactctcatctggttcatggcatctgaaaattattt
tgataactctttcccaattctcccaacaatactccacacaggaccattct
agtccccagggaagatgaattcctgtacacaatgcttcttgtaggcattt
gaattaggtaacttgaatcctttcaaaacagtctgaagagcctatagcct
aattattaagaggaattcccgacagatgcagagattcactacccactaga
tcttttgaagattaaaatataacagaacacatcatctacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40319507_40320247
seq2: B6Ng01-004K13.b_47_787 (reverse)

seq1  CCATACCCTCCCCACCCACTCCTACTTCTTGGCCCTGGTGTTCCCTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCTCCCCACCCACTCCTACTTCTTGGCCCTGGTGTTCCCTTGTA  50

seq1  CTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAAAGATG  100

seq1  GCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGTAAATCATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGTAAATCATTTCT  150

seq1  AATTGAGCAGAATGTAAAGTAGAGGATAGCAGGGATAAACTGAGGTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGCAGAATGTAAAGTAGAGGATAGCAGGGATAAACTGAGGTATTA  200

seq1  GAAAATAAAATAAAACCTAGAATCCCTCAGCAAAACAAGGGATCACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATAAAACCTAGAATCCCTCAGCAAAACAAGGGATCACATCT  250

seq1  GTGCTTGTTACAAAGTCTATGATGTATGTGGACTTTAGAAGAATCTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTTACAAAGTCTATGATGTATGTGGACTTTAGAAGAATCTGATT  300

seq1  GCATCACCTCACAAGAGTGTCCATTTGGTCCAAGATAAAATGAAAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCTCACAAGAGTGTCCATTTGGTCCAAGATAAAATGAAAGGGAA  350

seq1  AGTTGGAGGAACTGCATACTCATCTTCTGGCCCACAATGGCAATAAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGGAACTGCATACTCATCTTCTGGCCCACAATGGCAATAAGGTC  400

seq1  AATGTATTTGCAAGAACATGCAAAACTTATAGTAGCTTTGTCTTAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTGCAAGAACATGCAAAACTTATAGTAGCTTTGTCTTAAAGTG  450

seq1  ACATTTTGAAGATAATAGAATTAAATCATGATCATATGTGGATTTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGAAGATAATAGAATTAAATCATGATCATATGTGGATTTTTAAA  500

seq1  CCACAATCTAGATTCATATAAGTAATAAGATATTGCAGAACTATGTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATCTAGATTCATATAAGTAATAAGATATTGCAGAACTATGTATTC  550

seq1  ATTAGCTTGAAGTGGCTGAAGTCCATTCTAGATGGTAAACTTCTCAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTGAAGTGGCTGAAGTCCATTCTAGATGGTAAACTTCTCAGGGA  600

seq1  GCTTTGAAAGGACTAACTGAAGCCGGGCATGGTGGCATATGCCTTTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAAGGACTAACTGAAGCCGGGCATGGTGGCATATGCCTTTAATC  650

seq1  CCAGCAGTTGGGAGGCTGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTTGGGAGGCTGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCC  700

seq1  TGGTCTACAGGGTGAGTTCCAGGAAAGGACTAACTGAATTC  741
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGGGTGAGTTCCAGGAAAGGACTAACTGAATTC  741

seq1: chr5_40178984_40180038
seq2: B6Ng01-004K13.g_69_1111

seq1  GAATTCCTCATAGAGTTCTTGATGACTATGTGTATGATTTAATATTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATAGAGTTCTTGATGACTATGTGTATGATTTAATATTTAGC  50

seq1  TAAAGGATTTAATCTGAGTATGAAGGTGGCAAAAGTTCTGCACATGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATTTAATCTGAGTATGAAGGTGGCAAAAGTTCTGCACATGAATA  100

seq1  TGGAGAATGTAAATATATCTTCCCTTGAAAATAATCAAGGTCGAAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATGTAAATATATCTTCCCTTGAAAATAATCAAGGTCGAAAGATT  150

seq1  GATCTCATTGAGACATTTTGTTTGCCTCAGAGAAATCTTATATAAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATTGAGACATTTTGTTTGCCTCAGAGAAATCTTATATAAAATCA  200

seq1  AATCATAATTTCTATTTGGTCGTAAATGGTGACACAAAACACTGCTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAATTTCTATTTGGTCGTAAATGGTGACACAAAACACTGCTAGTT  250

seq1  TTAAATCTTAGGACTCAATGAAAAACACTAAGGTGCTCACTGCTTGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTTAGGACTCAATGAAAAACACTAAGGTGCTCACTGCTTGCAGC  300

seq1  TAAGGTGCTCAGTGCTCTGAACTGCAGCTTTAAATATTCAGAAGCCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGCTCAGTGCTCTGAACTGCAGCTTTAAATATTCAGAAGCCTCTG  350

seq1  TGCCATTCCTTCCATGCAAAAATCGTCTCCATATCCATTCCATTTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCCTTCCATGCAAAAATCGTCTCCATATCCATTCCATTTTTTAG  400

seq1  CAACATTCTACTCTCATTTGTCACCCTCTTCTTTATTTTTAATTATAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCTACTCTCATTTGTCACCCTCTTCTTTATTTTTAATTATAATA  450

seq1  CACGAAACTGACTGCATTCACTGTGCTTTTCTGTAGTGTATTAAGCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAACTGACTGCATTCACTGTGCTTTTCTGTAGTGTATTAAGCTATG  500

seq1  ATGCTGCTGATGCTGAGGGTTCAGAAGCCGTCTAACATCCTGAACTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTGATGCTGAGGGTTCAGAAGCCGTCTAACATCCTGAACTCCAC  550

seq1  TGCAGAACCCTCCCTGTCCCATAAGCTGGCTCTTCAGCAGACATCTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACCCTCCCTGTCCCATAAGCTGGCTCTTCAGCAGACATCTCTTT  600

seq1  TTACTTCCTTTTCTACATTTTAAAATAGTACTTCTTTATGTAAAGTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTTTTCTACATTTTAAAATAGTACTTCTTTATGTAAAGTATAA  650

seq1  ATATAGCAATGTGGTTAAACCTAGAGAAAAAAAAAAGGCTCAGAGTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAATGTGGTTAAACCTAGAGAAAAAAAAAAGGCTCAGAGTGGGA  700

seq1  ATTCACTAATATCAACTTAAAAGAAAATCAAATATGTCAATCATCCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAATATCAACTTAAAAGAAAATCAAATATGTCAATCATCCAGAA  750

seq1  ACATTTTTCAGTATAACTCTCATCTGGTTCATGGCATCTGAAAATTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCAGTATAACTCTCATCTGGTTCATGGCATCTGAAAATTATTT  800

seq1  TGATAACTCTTTCCCAATTCTCCCAACAATACTCCACACAGGACCATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTCTTTCCCAATTCTCCCAACAATACTCCACACAGGACCATTCT  850

seq1  AAGTCCCCAGGGAAGATGAATTCCTGTACACAATGCTTCTTGTAGGCATT  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGTCCCCAGGGAAGATGAATTCCTGTACACAATGCTTCTTGTAGGCATT  899

seq1  TGAATTAGGTAACTTGAATCCTTTCAAAAACAGTCTGAAAGAGCCTTATA  950
      ||||||||||||||||||||||||| ||||||||||| ||||||| ||||
seq2  TGAATTAGGTAACTTGAATCCTTTC-AAAACAGTCTG-AAGAGCC-TATA  946

seq1  GCCTAATTATTAAAGAGGAATTCCCGACAAGATGCAGGAAGATTTCACTA  1000
      ||||||||||| |||||||||||||||| ||||||||  ||| |||||||
seq2  GCCTAATTATT-AAGAGGAATTCCCGAC-AGATGCAG--AGA-TTCACTA  991

seq1  CACACTTAGATCTATGAAAGAATTAAAATATAACAAGAAACCACATCATC  1050
      | ||| ||||||| |  ||| ||||||||||||| ||||  |||||||||
seq2  CCCAC-TAGATCTTTTGAAG-ATTAAAATATAAC-AGAA--CACATCATC  1036

seq1  --CATAC  1055
        |||||
seq2  TACATAC  1043