BAC Information

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BAC

Clone NameB6Ng01-004K22
Chromosome5 (Build37)
Map Location 15,010,185 - 15,283,690
singlet/doubletdoublet
Overlap geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004K22.bB6Ng01-004K22.g
ACCDH842026DH842027
length8591,140
definitionDH842026|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K22, 5' end.DH842027|Mus musculus domesticus DNA, BAC clone: B6Ng01-004K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,010,185 - 15,011,046)(15,282,542 - 15,283,690)
sequence
gaattctgcactaaacccatctagtcctgggctttgtttgcttgggagac
ttttaatgactgcttctatttctttggcagttatgggagtgttagactgt
ttatctgatcctggtttcattttggtacctagtgtctgtctagaaaattg
tccatttcatccaattttttcagtattgttgagtatagtcttttgtaata
ggaaattatgatttttgaatattctgtttattctgttgttatttctccct
tttcaattctgattttgttaatttggatactgtgtctttgccctctggtt
agtctggctaagggtttatctattttgttgccttctcaaagaagcagctc
ccggttttattgattctttgtatagttcttttgtttctacttggttgatt
tcagctctgcatttgattatttcctgacatctactcctcttgggtgtatg
ttgggaacaaaataaaagaagggggggggtcttggactggggcctgggga
gaagtaggctagaaataaatgcccactccccaccagagtttccctattct
ctggtctttcaggcatgggagggctgctatctaccctatccactcatccc
tgtgtgggcattcctctatcccactcttcagggggtggtcaaggggcagc
cctgcctgggaacccctccccagctactttgctaaagcccccatggttgt
gggatagagggaagagggaagaaattcccaacactgaccagagtgtgcag
cagaacttgaaggagcagagcagagactctatggttttagagccttatta
tagaaatgcagaggaaagagagaaggtagaaaggaggaaaagagagaggg
ggagggagg
gaattcatttaggaaagtgagagacatgagtttctggcacaggttcatgc
acatatgatcttaagagccacatgaaaataggtttctcctaggagaagaa
acttatgattggagagctatatgatcagcttcatcttttgcaatgtgtct
gaaagattgggctaagagcagggcccacgagtgtcagattcacttaagcc
agaaagaagcaaagaagcagtcatgaattcacctcagaggtgtgagcaaa
aatacatggaatcagctgggacccagcacctgtgagccaagtgagagaaa
aataaaagggcacctgaaatgcatataaagggtcgtgcaaatataagtca
aacagaagagcaacctcatagtatagccttcttagcagaactcacagtga
gagaaacacaggattcaacacaacttcactctcttcctttcttaccatca
tcctacaagctgtccttaataggcctacaatttactctctcagagctctg
tagaccagaaaattcaaggtctcaccagttcagctttctggtgtattttg
taagggtgctactagccctattagttcaagggcccacctttatgacttaa
tttcatcttaattacttcttactcttaggatagtcactttgggattgggg
attcaacatttcatattgagagtgtactcaccgtctgttgtatctaccca
catctaaactgttaatcagtgaagccaagtgtactatgaaaatcaagaga
tactttgtaggggcttcagaaaaatctatcaaatgtgaagcttcattcta
tttgtagctgaatattaagtgataaatatatgtgctactgtttttctgta
gaggaatttcaattcagcaacatggcctctctgtcagggatcacattcaa
agacctatgtctgtgtgatccagctggattgcagacatacccttagtaca
aacctttaagtaaagttggttagtagaagaaagtagctatgtttgaaagt
aacatctgactacgggaaacaagtgatgatcggagaaagatcttgacaga
atgaatcagagaatagaatagcccacttctccagaacagttacaggaaag
aacagctactagagcagcccaggagagagaaagtccagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15010185_15011046
seq2: B6Ng01-004K22.b_46_904

seq1  GAATTCTGCACTAAACCCATCTAGTCCTGGGCTTTGTTTGGTTGGGAGAC  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAATTCTGCACTAAACCCATCTAGTCCTGGGCTTTGTTTGCTTGGGAGAC  50

seq1  TTTTAATGACTGCTTCTATTTCTTTGGCAGTTATGGGAGTGTTAGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGACTGCTTCTATTTCTTTGGCAGTTATGGGAGTGTTAGACTGT  100

seq1  TTATCTAATCCTGGTTTCATTTTGGTACCTAGTGTCTGTCTAGAAAATTG  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGATCCTGGTTTCATTTTGGTACCTAGTGTCTGTCTAGAAAATTG  150

seq1  TCCATTTCATCCAATTTTTTCAGTATTGTTGAGTATAGTCTTTTGTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCATCCAATTTTTTCAGTATTGTTGAGTATAGTCTTTTGTAATA  200

seq1  GGAAATTATGATTTTTGAATATTCTGTTTATTCTGTTGTTATTTCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATGATTTTTGAATATTCTGTTTATTCTGTTGTTATTTCTCCCT  250

seq1  TTTCAATTCTGATTTTGTTAATTTGGATACTGTCTCTTTGCCCTCTGGTT  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCAATTCTGATTTTGTTAATTTGGATACTGTGTCTTTGCCCTCTGGTT  300

seq1  AATCTGGCTAAGGGATTATCTATTGTGTTGCTTTCTCAAAGAACCAGCTC  350
      | |||||||||||| ||||||||| |||||| ||||||||||| ||||||
seq2  AGTCTGGCTAAGGGTTTATCTATTTTGTTGCCTTCTCAAAGAAGCAGCTC  350

seq1  CCGGTTTTATTGATTCTTTGTTTAGTTCTTTTGTTTCTACTTGGTTGATT  400
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCGGTTTTATTGATTCTTTGTATAGTTCTTTTGTTTCTACTTGGTTGATT  400

seq1  TCAGCTCTGTATTTGATTATTTCCTGACATCTACTCCTCTTGGGTGTATG  450
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTGCATTTGATTATTTCCTGACATCTACTCCTCTTGGGTGTATG  450

seq1  TTGGGAACAAAATACAAGAAGGGGGGGGGTCTTGGACTGGGGCCTGGGGA  500
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGGAACAAAATAAAAGAAGGGGGGGGGTCTTGGACTGGGGCCTGGGGA  500

seq1  GAAGTAGGCTAAGAAATAAATGCCCACACCCCACCAGAGTTTTCCTATTC  550
      |||||||||| |||||||||||||||| |||||||||||||| |||||||
seq2  GAAGTAGGCT-AGAAATAAATGCCCACTCCCCACCAGAGTTTCCCTATTC  549

seq1  TCTGGTCAGTCAGGCATGGGAGGGCTGCTATCTACTCTATCCACTCATCC  600
      |||||||  |||||||||||||||||||||||||| ||||||||||||||
seq2  TCTGGTCTTTCAGGCATGGGAGGGCTGCTATCTACCCTATCCACTCATCC  599

seq1  CTGGGTGGGCATTCCTCTATCCCACTCTTCACTGGGTGGTCAAGGGGCAG  650
      ||| |||||||||||||||||||||||||||  |||||||||||||||||
seq2  CTGTGTGGGCATTCCTCTATCCCACTCTTCAGGGGGTGGTCAAGGGGCAG  649

seq1  CCCTGCCTGGGAACACCCCCCCCAGCTACTTTGCTAAAGCCCCCAGGGTT  700
      |||||||||||||| ||| |||||||||||||||||||||||||| ||||
seq2  CCCTGCCTGGGAAC-CCCTCCCCAGCTACTTTGCTAAAGCCCCCATGGTT  698

seq1  GTGGGAGAGAGGGAAGAGTGAAGAAATTCCCAACACTGACCAGAGTGTGC  750
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGGATAGAGGGAAGAGGGAAGAAATTCCCAACACTGACCAGAGTGTGC  748

seq1  AGCAGAACTTGAAGGAGCAGAGCAGAGACTCTATGGTTTTAGAGCCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACTTGAAGGAGCAGAGCAGAGACTCTATGGTTTTAGAGCCTTAT  798

seq1  TATAGAAATGCAGAGGAAAGAGAGAAGGTAGAAAGGAGGAAAAGAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATAGAAATGCAGAGGAAAGAGAGAAGGTAGAAAGGAGGAAAAGAGAGA-  847

seq1  GGGGGAGGGAGG  862
      ||||||||||||
seq2  GGGGGAGGGAGG  859

seq1: chr5_15282542_15283690
seq2: B6Ng01-004K22.g_68_1207 (reverse)

seq1  GACTCGACTCTCTCTCTCCCTGTGCTGCTCTTAAATAGCTTGTCTTTCCT  50
      |||| |||| ||||||| |||| ||||||||  | |||||  ||||||||
seq2  GACTGGACTTTCTCTCT-CCTGGGCTGCTCT--AGTAGCTGTTCTTTCCT  47

seq1  GT-ACTGTTCTTGTGAGAGTTGGGCCTATTCTA-TCTCTGATTCATTCTG  98
      || |||||||| | || |||  || |||||||| ||||||||||||||||
seq2  GTAACTGTTCTGGAGA-AGT--GGGCTATTCTATTCTCTGATTCATTCTG  94

seq1  TC-AGATCTTTCTCCGATTCATCACTTTGTTTTCCCCTTAGTCAGATGTT  147
      || |||||||||||||| ||||||| ||||||  ||| ||||||||||||
seq2  TCAAGATCTTTCTCCGA-TCATCAC-TTGTTT--CCCGTAGTCAGATGTT  140

seq1  ACTTTCAAACATAGCTACTTTCTTCTACTAACCAACTTTACCTTAAAGGT  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTTTCAAACATAGCTACTTTCTTCTACTAACCAACTTTA-CTTAAAGGT  189

seq1  TTGTACTAAGGGTATGTCTGCAATCCAGCTGGATCACACAGACATAGGTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTAAGGGTATGTCTGCAATCCAGCTGGATCACACAGACATAGGTC  239

seq1  TTTGAATGTGATCCCCTGACAGAGAGGCCATGTTGCTGAATTGAAATTCC  297
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGTGAT-CCCTGACAGAGAGGCCATGTTGCTGAATTGAAATTCC  288

seq1  TCTACAGAAAAACAGTAGCACATATATTTATCACTTAATATTCAGCTACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAAAAACAGTAGCACATATATTTATCACTTAATATTCAGCTACA  338

seq1  AATAGAATGAAGCTTCACATTTGATAGATTTTTCTGAAGCCCCTACAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATGAAGCTTCACATTTGATAGATTTTTCTGAAGCCCCTACAAAG  388

seq1  TATCTCTTGATTTTCATAGTACACTTGGCTTCACTGATTAACAGTTTAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTGATTTTCATAGTACACTTGGCTTCACTGATTAACAGTTTAGA  438

seq1  TGTGGGTAGATACAACAGACGGTGAGTACACTCTCAATATGAAATGTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTAGATACAACAGACGGTGAGTACACTCTCAATATGAAATGTTGA  488

seq1  ATCCCCAATCCCAAAGTGACTATCCTAAGAGTAAGAAGTAATTAAGATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAATCCCAAAGTGACTATCCTAAGAGTAAGAAGTAATTAAGATGA  538

seq1  AATTAAGTCATAAAGGTGGGCCCTTGAACTAATAGGGCTAGTAGCACCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTCATAAAGGTGGGCCCTTGAACTAATAGGGCTAGTAGCACCCT  588

seq1  TACAAAATACACCAGAAAGCTGAACTGGTGAGACCTTGAATTTTCTGGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATACACCAGAAAGCTGAACTGGTGAGACCTTGAATTTTCTGGTC  638

seq1  TACAGAGCTCTGAGAGAGTAAATTGTAGGCCTATTAAGGACAGCTTGTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCTCTGAGAGAGTAAATTGTAGGCCTATTAAGGACAGCTTGTAG  688

seq1  GATGATGGTAAGAAAGGAAGAGAGTGAAGTTGTGTTGAATCCTGTGTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGTAAGAAAGGAAGAGAGTGAAGTTGTGTTGAATCCTGTGTTTC  738

seq1  TCTCACTGTGAGTTCTGCTAAGAAGGCTATACTATGAGGTTGCTCTTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGTGAGTTCTGCTAAGAAGGCTATACTATGAGGTTGCTCTTCTG  788

seq1  TTTGACTTATATTTGCACGACCCTTTATATGCATTTCAGGTGCCCTTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTATATTTGCACGACCCTTTATATGCATTTCAGGTGCCCTTTTA  838

seq1  TTTTTCTCTCACTTGGCTCACAGGTGCTGGGTCCCAGCTGATTCCATGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTCACTTGGCTCACAGGTGCTGGGTCCCAGCTGATTCCATGTA  888

seq1  TTTTTGCTCACACCTCTGAGGTGAATTCATGACTGCTTCTTTGCTTCTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTCACACCTCTGAGGTGAATTCATGACTGCTTCTTTGCTTCTTT  938

seq1  CTGGCTTAAGTGAATCTGACACTCGTGGGCCCTGCTCTTAGCCCAATCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTAAGTGAATCTGACACTCGTGGGCCCTGCTCTTAGCCCAATCTT  988

seq1  TCAGACACATTGCAAAAGATGAAGCTGATCATATAGCTCTCCAATCATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACATTGCAAAAGATGAAGCTGATCATATAGCTCTCCAATCATAA  1038

seq1  GTTTCTTCTCCTAGGAGAAACCTATTTTCATGTGGCTCTTAAGATCATAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTCCTAGGAGAAACCTATTTTCATGTGGCTCTTAAGATCATAT  1088

seq1  GTGCATGAACCTGTGCCAGAAACTCATGTCTCTCACTTTCCTAAATGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGAACCTGTGCCAGAAACTCATGTCTCTCACTTTCCTAAATGAAT  1138

seq1  TC  1149
      ||
seq2  TC  1140