BAC Information

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BAC

Clone NameB6Ng01-004M17
Chromosome5 (Build37)
Map Location 122,475,917 - 122,477,125
singlet/doubletsinglet
Overlap geneCutl2, LOC100042693
Upstream geneLOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik
Downstream geneMyl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M17.bB6Ng01-004M17.g
ACCDH842108DH842109
length4531,165
definitionDH842108|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M17, 5' end.DH842109|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
actgtgtagaccttgaagtcacagagatctacttgtctctgcctccttcc
gtgccaggagtaaaggtgtgtgttatcataccctgccatccttaccctct
ttttgtttctttgtaatactttgtttttcacggagtgttcatgcctgtgt
ctgtatatgtgggggcagaagtacccatgaaacccagcagagggcagtgg
atcccctggaactggattgttgagaggactgctgtagatgctgggaacca
aactcaagtcctccataagtcccctgggaacggaacttaggaccttgtgc
acactggtcacgtcctctaacactgaactgcgcttccagtcccttactta
tctatcttaaaccaatatggtgcccacgtaagactgtaaagtagcaaatg
gcactaaattcaaatgcatttcctcctcctcctcctcctcctcctcctct
tcc
gaattctctactgggatcgaaaggtcatacataggcaccgtgagtgcact
cacgtggagccggctctccactcacgtgggttcggaactctacaaggtgc
agtgggatcacccgggtgacctgttaggctcaagactgccccagggatgc
tgactcaataggtttttaaaaggccctgaacaaactgattcccaggcagc
atagatgctgctgcaggtcccaagaaccttgagccaagctggggcagtta
aaggctcacacctttaaccccagcacttgggaggtagaggcaggtgggtc
tctgagtttgaggccatcctggtctatagagccagttccatgacagccag
ggctacacagagagaccttgtctcaaagattaaataaataaataaataaa
taaataaataaataaacaaccttgtccaggaaattaatgaaaaacgttct
tacttgctaataccactggacgtttagtaaaaacaaacaccaccagggtg
aatgacctctgatctttgggctttatctcccagaccaaatcctccacccc
caccccaccccatctctggctcacccagtatttatttacacatgctttcc
cacagagcagagtcgagtaagccgttgtgcaagatggtattcgggtaaca
aaatcaaaaatgttcacttggttgacttaaggcatgtaggtccgcccaga
ttatagaattcagcaggaaaccatcttacctagggtgaactttccgtcca
aagttacaacctaccacaaaagcaggatcagaccaggcagcctctgagaa
ccggcttattacccacagactctgtaatggttacttttctcattgctaca
acaaaagcaacttagggaggaagacggactctggctcacagtcaaagggg
atgcagccgccgtggccgtgcaccagggaagcaagagcctcttcgcttct
cccatctgggtgggacataagtgaactgagcaggagtgggaaaagctacc
aacgcacccacctccagcacccactctgtctagaagctccgcctcttaag
ttcacaatgactagaacagcagctgacacttggaaaaacaggttggaacc
gtgagcttgatgtggtcttgcactaatgatgttcacctcttaactgcact
cttttaatacagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122475917_122477125
seq2: B6Ng01-004M17.g_68_1232

seq1  GAATTCTCTACTGGGATCGAAAGGTCATACATAGGCACCGTGAGTGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGGGATCGAAAGGTCATACATAGGCACCGTGAGTGCACT  50

seq1  CACGTGGAGCCGGCTCTCCACTCACGTGGGTTCGGAACTCTACAAGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGAGCCGGCTCTCCACTCACGTGGGTTCGGAACTCTACAAGGTGC  100

seq1  AGTGGGATCACCCGGGTGACCTGTTAGGCTCAAGACTGCCCCAGGGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGATCACCCGGGTGACCTGTTAGGCTCAAGACTGCCCCAGGGATGC  150

seq1  TGACTCAATAGGTTTTTAAAAGGCCCTGAACAAACTGATTCCCAGGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAATAGGTTTTTAAAAGGCCCTGAACAAACTGATTCCCAGGCAGC  200

seq1  ATAGATGCTGCTGCAGGTCCCAAGAACCTTGAGCCAAGCTGGGGCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGCTGCTGCAGGTCCCAAGAACCTTGAGCCAAGCTGGGGCAGTTA  250

seq1  AAGGCTCACACCTTTAACCCCAGCACTTGGGAGGTAGAGGCAGGTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACACCTTTAACCCCAGCACTTGGGAGGTAGAGGCAGGTGGGTC  300

seq1  TCTGAGTTTGAGGCCATCCTGGTCTATAGAGCCAGTTCCATGACAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTGAGGCCATCCTGGTCTATAGAGCCAGTTCCATGACAGCCAG  350

seq1  GGCTACACAGAGAGACCTTGTCTCAAAGATTAAATAAATAAATAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAGAGACCTTGTCTCAAAGATTAAATAAATAAATAAATAAA  400

seq1  TAAATAAATAAATAAACAACCTTGTCCAGGAAATTAATGAAAAACGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAACAACCTTGTCCAGGAAATTAATGAAAAACGTTCT  450

seq1  TACTTGCTAATACCACTGGACGTTTAGTAAAAACAAACACCACCAGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTAATACCACTGGACGTTTAGTAAAAACAAACACCACCAGGGTG  500

seq1  AATGACCTCTGATCTTTGGGCTTTATCTCCCAGACCAAATCCTCCACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTCTGATCTTTGGGCTTTATCTCCCAGACCAAATCCTCCACCCC  550

seq1  CACCCCACCCCATCTCTGGCTCACCCAGTATTTATTTACACATGCTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCCATCTCTGGCTCACCCAGTATTTATTTACACATGCTTTCC  600

seq1  CACAGAGCAGAGTCGAGTAAGCCGTTGTGCAAGATGGTATTCGGGTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCAGAGTCGAGTAAGCCGTTGTGCAAGATGGTATTCGGGTAACA  650

seq1  AAATCAAAAATGTTCACTTGGTTGACTTAAGGCATGTAGGTCCGCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAATGTTCACTTGGTTGACTTAAGGCATGTAGGTCCGCCCAGA  700

seq1  TTATAGAATTCAGCAGGAAACCATCTTACCTAGGGTGAACTTTCCGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAATTCAGCAGGAAACCATCTTACCTAGGGTGAACTTTCCGTCCA  750

seq1  AAGTTACAACCTACCACAAAAGCAGGATCAGACCAGGCAGCCTCTGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAACCTACCACAAAAGCAGGATCAGACCAGGCAGCCTCTGAGAA  800

seq1  CCGGCTTATTACCCACAGACTCTGTAATGGTTACTTTTCTCATTGCTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTATTACCCACAGACTCTGTAATGGTTACTTTTCTCATTGCTACA  850

seq1  ACAAAAGCAACTTAGGGGAGGAAGACGGACTCTGGCTCACAGTCAAAGGG  900
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  ACAAAAGCAACTTA-GGGAGGAAGACGGACTCTGGCTCACAGTCAAA-GG  898

seq1  GGATGCAGGCCGCCGTGGCCGTGCACCAGGGAAGCAGGAGCCTCTTCGCT  950
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GGATGCA-GCCGCCGTGGCCGTGCACCAGGGAAGCAAGAGCCTCTTCGCT  947

seq1  TCCTCCCATCTGGGTGGGACAATAAGTGAACTGAGCAGGAAGTGGGAAAA  1000
      | |||||||||||||||||| |||||||||||||||||| |||||| |||
seq2  T-CTCCCATCTGGGTGGGAC-ATAAGTGAACTGAGCAGG-AGTGGG-AAA  993

seq1  AGCTAACCAACCGCCAACCCCACCCCCCAGCAACCCACTCTGTCCTAGAA  1050
      |||| ||||| |||  ||||   || ||||| ||||||||||| ||||||
seq2  AGCT-ACCAA-CGC--ACCC--ACCTCCAGC-ACCCACTCTGT-CTAGAA  1035

seq1  GGCTCCGCCTCTTAAAAGGTTTCACAATGACCTAGAACAGCCAGCTGGAC  1100
       ||||||||||||||     |||||||||| ||||||||| ||||| |||
seq2  -GCTCCGCCTCTTAA----GTTCACAATGA-CTAGAACAG-CAGCT-GAC  1077

seq1  ACTTGGAGAACAAGTGTTGGAACACGGTGAGCCTGGGGATGGGTGGGGCG  1150
      ||||||| ||  || ||||||  || |||||| |   |||| |      |
seq2  ACTTGGAAAAACAG-GTTGGA--ACCGTGAGCTT---GATGTG------G  1115

seq1  TTTGCCAGCTAAATGAGTGGTTCTCAACCTTCCTAACCTGCAACTC-TTT  1199
      | |  || || |||||   ||||   ||||  || | |||| |||| |||
seq2  TCTTGCA-CT-AATGA--TGTTC---ACCT--CTTAACTGC-ACTCTTTT  1155

seq1  AATACAGTTC  1209
      ||||||||||
seq2  AATACAGTTC  1165