BAC Information

Click to search

BAC

Clone NameB6Ng01-004O03
Chromosome5 (Build37)
Map Location 140,464,233 - 140,626,027
singlet/doubletdoublet
Overlap geneMad1l1
Upstream genePdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270
Downstream geneFtsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O03.bB6Ng01-004O03.g
ACCDH842175DH842176
length612713
definitionDH842175|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O03, 5' end.DH842176|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,464,233 - 140,464,844)(140,625,315 - 140,626,027)
sequence
gaattctggctcctccatctgcccacccatcccagtgtctatgttcgagt
gagtccagttatccaggcatcttaacagcagacaaggtgagcttttgctt
caatctctcccatctctttctcagctcctctcttcccgatctatgctctt
ccagcagctgctggatcactttccaggagccatgctgggcttttgtatca
attgcttcaacattacaaactaactctgggaacaccacctctgtacagca
ttcattgcttcagggcagcagtgcctgtgaggctggcctttaattcaaag
tcttttttgagatgcttggggtgagggtcacgggcagaagctgcctttta
gtctcttttctttggttgactgtgtgcccacatgcccgagtgtgggatca
gctcagcaaatgctttttgtatcctgtgttctacctggaaggtcttgcat
ttcctagtagagtatatttctcatgttctcaaagaagctagagcccccag
cccccagtgtggacatgtgacctaagttgcgccaatcagaagctctgttc
tgcaggccactgtatctggtccatagtacaaataggagagaggtgtgttg
ggggaggggata
gaattcttcctttccctggtacctatgctcctgacctattaggattccct
cagaatgggctgcagagagaagcctgggccctctaaagaggatttgaagc
tcaggatcttgaagagttccttaagtggaggcaagtgtcagggcacaagc
ccaggtggcagcgtgaccagagctggaagcagtggggccagaatgcttgg
ggacctagggcaggggccacagactctcgcatctattcagctttcagagt
ggggtacagctagagcctctgatagaaatgagcctgtaaaagaggggttt
taggcatctaccaggaactgattttgttgtggacgcccccatgcctccag
ctctcattcatctgagggtgaccagtgaatgactctgagagacatgatgg
gagagtgggcagggagcagggctgggatgcccagagctgggtggactcca
gctctttgtgggctgtaggctcatgacttagtttttcttaagaaagccgt
gtggagtggctacgagttgagtggaggaacctagataaggagaaaggcca
tggggcttgcgaaagaaccacaggagatgcccacagagagcagccatgca
tacagcagccatgcatagaggccctcagaggcagaactgtggtgagtggg
cggcccagtgagtcagcattggcaggggaggctggaaggagatgaggaga
ggagaagggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140464233_140464844
seq2: B6Ng01-004O03.b_44_655

seq1  GAATTCTGGCTCCTCCATCTGCCCACCCATCCCAGTGTCTATGTTCGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTCCTCCATCTGCCCACCCATCCCAGTGTCTATGTTCGAGT  50

seq1  GAGTCCAGTTATCCAGGCATCTTAACAGCAGACAAGGTGAGCTTTTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGTTATCCAGGCATCTTAACAGCAGACAAGGTGAGCTTTTGCTT  100

seq1  CAATCTCTCCCATCTCTTTCTCAGCTCCTCTCTTCCCGATCTATGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTCCCATCTCTTTCTCAGCTCCTCTCTTCCCGATCTATGCTCTT  150

seq1  CCAGCAGCTGCTGGATCACTTTCCAGGAGCCATGCTGGGCTTTTGTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCTGCTGGATCACTTTCCAGGAGCCATGCTGGGCTTTTGTATCA  200

seq1  ATTGCTTCAACATTACAAACTAACTCTGGGAACACCACCTCTGTACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCAACATTACAAACTAACTCTGGGAACACCACCTCTGTACAGCA  250

seq1  TTCATTGCTTCAGGGCAGCAGTGCCTGTGAGGCTGGCCTTTAATTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTTCAGGGCAGCAGTGCCTGTGAGGCTGGCCTTTAATTCAAAG  300

seq1  TCTTTTTTGAGATGCTTGGGGTGAGGGTCACGGGCAGAAGCTGCCTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGAGATGCTTGGGGTGAGGGTCACGGGCAGAAGCTGCCTTTTA  350

seq1  GTCTCTTTTCTTTGGTTGACTGTGTGCCCACATGCCCGAGTGTGGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTTCTTTGGTTGACTGTGTGCCCACATGCCCGAGTGTGGGATCA  400

seq1  GCTCAGCAAATGCTTTTTGTATCCTGTGTTCTACCTGGAAGGTCTTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAAATGCTTTTTGTATCCTGTGTTCTACCTGGAAGGTCTTGCAT  450

seq1  TTCCTAGTAGAGTATATTTCTCATGTTCTCAAAGAAGCTAGAGCCCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTAGAGTATATTTCTCATGTTCTCAAAGAAGCTAGAGCCCCCAG  500

seq1  CCCCCAGTGTGGACATGTGACCTAAGTTGCGCCAATCAGAAGCTCTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTGTGGACATGTGACCTAAGTTGCGCCAATCAGAAGCTCTGTTC  550

seq1  TGCAGGCCACTGTATCTGGTCCATAGTACAAATAGGAGAGAGGTGTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCCACTGTATCTGGTCCATAGTACAAATAGGAGAGAGGTGTGTTG  600

seq1  GGGGAGGGGATA  612
      ||||||||||||
seq2  GGGGAGGGGATA  612

seq1: chr5_140625315_140626027
seq2: B6Ng01-004O03.g_67_779 (reverse)

seq1  CCTTCCCTTCTCCTCTCCTCATCCCCTTCCAGCCTCCCCTGCCAATGCTG  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTTCCCTTCTCCTCTCCTCATCTCCTTCCAGCCTCCCCTGCCAATGCTG  50

seq1  ACTCACTGGGCCGCCCACTCACCACAGTTCTGCCTCTGAGGGCCTCTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGGGCCGCCCACTCACCACAGTTCTGCCTCTGAGGGCCTCTATG  100

seq1  CATGGCTGCTGTATGCATGGCTGCTCTCTGTGGGCATCTCCTGTGGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGCTGTATGCATGGCTGCTCTCTGTGGGCATCTCCTGTGGTTCT  150

seq1  TTCGCAAGCCCCATGGCCTTTCTCCTTATCTAGGTTCCTCCACTCAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAGCCCCATGGCCTTTCTCCTTATCTAGGTTCCTCCACTCAACTC  200

seq1  GTAGCCACTCCACACGGCTTTCTTAAGAAAAACTAAGTCATGAGCCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCACTCCACACGGCTTTCTTAAGAAAAACTAAGTCATGAGCCTACA  250

seq1  GCCCACAAAGAGCTGGAGTCCACCCAGCTCTGGGCATCCCAGCCCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAAAGAGCTGGAGTCCACCCAGCTCTGGGCATCCCAGCCCTGCTC  300

seq1  CCTGCCCACTCTCCCATCATGTCTCTCAGAGTCATTCACTGGTCACCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCACTCTCCCATCATGTCTCTCAGAGTCATTCACTGGTCACCCTC  350

seq1  AGATGAATGAGAGCTGGAGGCATGGGGGCGTCCACAACAAAATCAGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATGAGAGCTGGAGGCATGGGGGCGTCCACAACAAAATCAGTTCC  400

seq1  TGGTAGATGCCTAAAACCCCTCTTTTACAGGCTCATTTCTATCAGAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATGCCTAAAACCCCTCTTTTACAGGCTCATTTCTATCAGAGGCT  450

seq1  CTAGCTGTACCCCACTCTGAAAGCTGAATAGATGCGAGAGTCTGTGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTACCCCACTCTGAAAGCTGAATAGATGCGAGAGTCTGTGGCCC  500

seq1  CTGCCCTAGGTCCCCAAGCATTCTGGCCCCACTGCTTCCAGCTCTGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTAGGTCCCCAAGCATTCTGGCCCCACTGCTTCCAGCTCTGGTCA  550

seq1  CGCTGCCACCTGGGCTTGTGCCCTGACACTTGCCTCCACTTAAGGAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCACCTGGGCTTGTGCCCTGACACTTGCCTCCACTTAAGGAACTC  600

seq1  TTCAAGATCCTGAGCTTCAAATCCTCTTTAGAGGGCCCAGGCTTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATCCTGAGCTTCAAATCCTCTTTAGAGGGCCCAGGCTTCTCTCT  650

seq1  GCAGCCCATTCTGAGGGAATCCTAATAGGTCAGGAGCATAGGTACCAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCATTCTGAGGGAATCCTAATAGGTCAGGAGCATAGGTACCAGGG  700

seq1  AAAGGAAGAATTC  713
      |||||||||||||
seq2  AAAGGAAGAATTC  713