BAC Information

Click to search

BAC

Clone NameB6Ng01-004P02
Chromosome5 (Build37)
Map Location 40,597,258 - 40,753,946
singlet/doubletdoublet
Overlap geneLOC100040502
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC208522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P02.bB6Ng01-004P02.g
ACCDH842217DH842218
length1,160274
definitionDH842217|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P02, 5' end.DH842218|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,752,806 - 40,753,946)(40,597,258 - 40,597,531)
sequence
gaattcttcatacccagaactgtaagaaagaaaggcatgctcacaaacaa
tattttctatagtattctgttacagcagacctaatggactaagacaagca
ttaatattttaatttacatacgcgattaatgactaaataaatggctccat
attattctatagacttgaaatgtagacgtactctgaacctcaagttcaga
tgaaggaaatgatgacttgatatagggataggatgtgagtttatggcttc
ttgtcactcagtgctgtacttatgctactgtctgctactgggcatttata
aactgtatttttatttcattggtgttattaacaaagtacaaaaatagtat
ctttttctttacgcaatgttttcggtttaaggatcttattctctgcacat
ctgaaatcatatgacccatatgcatctagatttcaatattaaataatcac
ttcatatataagactccccctacatatagatgtagaaattgatcatttaa
aactactgaaaatcaccgaagatgacaagctatcaatggtcaccttgaac
ttcatatgaacattcatatgaagacccataagatataacaattcctttcc
tatcattttgctttctttgctactttgacttttttttacttattttcatt
tgctttgaatcttacagtagttttcaggtgacagcagatgctagtgaggg
tttgaagaaagaggaacactcctccattgttgctgggattgcaagctggt
acaaccactttggaaattagtctggtggtgcctctgaaattttgatataa
tattacttgaggacccagctttaccactcctgagcatatacccaaaagat
tctttaacatataacaaggacacatgctccactatattcatagcagtctt
tacgtattaataaccagaagttggaaagaatccacatgtccttcaacagg
gaaatggatacagaaaatgtggtacatttacacaacagagtactactcag
ctattaaatctatgaattcatgaaatcttaagcaaatggatgaaactaga
aaatatcatcctggagtgaccccatcacaaagacaccacattattatgca
cctcactgataggtgatatggtcaagcttggaatacagatgcattcagaa
cacatgaagc
catccatgatttttatgttttactcaataatgtttactgaactaatgaaa
ccttcatttggtaatgttttcatgtaaaagttacttttactattaagtct
tatattacactgcttgtttctaatattataagataccattatgtttataa
tttaatctaatcctaattttaaaatattttccagataatacttggtgaca
tatcttttaaatttcattatgattctgtcctctctctgagtgtgtgtgtg
tgtgtgtgtgtgtgtgtatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40752806_40753946
seq2: B6Ng01-004P02.b_72_1204 (reverse)

seq1  GCTTCATGTGGTCTGTGAATTGCATCTTGGTTATTCCAAGCTTTGGACCA  50
      |||||||||| ||||   | |||||||    ||||||||||||  |||| 
seq2  GCTTCATGTGTTCTG---AATGCATCT---GTATTCCAAGCTT--GACC-  41

seq1  ATATCCACTTATCAGTGA-GTGCAT-ATCATGTGTGTTCTTTTGTGATTG  98
      |||| ||| ||||||||| |||||| || ||||| ||   |||||||| |
seq2  ATAT-CACCTATCAGTGAGGTGCATAATAATGTG-GTGTCTTTGTGATGG  89

seq1  GGTCACT-CAGGATGATATTTTCTAGTTTCATCCATTTGCTTAAGAATTT  147
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTCACTCCAGGATGATATTTTCTAGTTTCATCCATTTGCTTAAG-ATTT  138

seq1  CATGAATTCATAGATTTTAATAGCTGAGTAGTACTCTGTTGTGTAAATGT  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATGAATTCATAGA-TTTAATAGCTGAGTAGTACTCTGTTGTGTAAATGT  187

seq1  ACCACATTTTCTGTATCCATTTCCCTGTTGAAGGACATGTGGATTCTTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTTTCTGTATCCATTTCCCTGTTGAAGGACATGTGGATTCTTTC  237

seq1  CAACTTCTGGTTATT-ATACGT-AAGACTGCTATGAATATAGTGGAGCAT  295
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  CAACTTCTGGTTATTAATACGTAAAGACTGCTATGAATATAGTGGAGCAT  287

seq1  GTGTCCTTGTTATATGTTAAAGAATCTTTTGGGTATATGCTCAGGAGTGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTGTTATATGTTAAAGAATCTTTTGGGTATATGCTCAGGAGTGG  337

seq1  TAAAGCTGGGTCCTCAAGTAATATTATATCAAAATTTCAGAGGCACCACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGGGTCCTCAAGTAATATTATATCAAAATTTCAGAGGCACCACC  387

seq1  AGACTAATTTCCAAAGTGGTTGTACCAGCTTGCAATCCCAGCAACAATGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAATTTCCAAAGTGGTTGTACCAGCTTGCAATCCCAGCAACAATGG  437

seq1  AGGAGTGTTCCTCTTTCTTCAAACCCTCACTAGCATCTGCTGTCACCTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTCCTCTTTCTTCAAACCCTCACTAGCATCTGCTGTCACCTGA  487

seq1  AAACTACTGTAAGATTCAAAGCAAATGAAAATAAGTAAAAAAAAGTCAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTGTAAGATTCAAAGCAAATGAAAATAAGTAAAAAAAAGTCAAA  537

seq1  GTAGCAAAGAAAGCAAAATGATAGGAAAGGAATTGTTATATCTTATGGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAGAAAGCAAAATGATAGGAAAGGAATTGTTATATCTTATGGGT  587

seq1  CTTCATATGAATGTTCATATGAAGTTCAAGGTGACCATTGATAGCTTGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATGAATGTTCATATGAAGTTCAAGGTGACCATTGATAGCTTGTC  637

seq1  ATCTTCGGTGATTTTCAGTAGTTTTAAATGATCAATTTCTACATCTATAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCGGTGATTTTCAGTAGTTTTAAATGATCAATTTCTACATCTATAT  687

seq1  GTAGGGGGAGTCTTATATATGAAGTGATTATTTAATATTGAAATCTAGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGGAGTCTTATATATGAAGTGATTATTTAATATTGAAATCTAGAT  737

seq1  GCATATGGGTCATATGATTTCAGATGTGCAGAGAATAAGATCCTTAAACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGGTCATATGATTTCAGATGTGCAGAGAATAAGATCCTTAAACC  787

seq1  GAAAACATTGCGTAAAGAAAAAGATACTATTTTTGTACTTTGTTAATAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTGCGTAAAGAAAAAGATACTATTTTTGTACTTTGTTAATAAC  837

seq1  ACCAATGAAATAAAAATACAGTTTATAAATGCCCAGTAGCAGACAGTAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAAATAAAAATACAGTTTATAAATGCCCAGTAGCAGACAGTAGC  887

seq1  ATAAGTACAGCACTGAGTGACAAGAAGCCATAAACTCACATCCTATCCCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACAGCACTGAGTGACAAGAAGCCATAAACTCACATCCTATCCCT  937

seq1  ATATCAAGTCATCATTTCCTTCATCTGAACTTGAGGTTCAGAGTACGTCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAGTCATCATTTCCTTCATCTGAACTTGAGGTTCAGAGTACGTCT  987

seq1  ACATTTCAAGTCTATAGAATAATATGGAGCCATTTATTTAGTCATTAATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAAGTCTATAGAATAATATGGAGCCATTTATTTAGTCATTAATC  1037

seq1  GCGTATGTAAATTAAAATATTAATGCTTGTCTTAGTCCATTAGGTCTGCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATGTAAATTAAAATATTAATGCTTGTCTTAGTCCATTAGGTCTGCT  1087

seq1  GTAACAGAATACTATAGAAAATATTGTTTGTGAGCATGCCTTTCTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGAATACTATAGAAAATATTGTTTGTGAGCATGCCTTTCTT  1133

seq1: chr5_40597258_40597531
seq2: B6Ng01-004P02.g_73_346

seq1  CATCCATGATTTTTATGTTTTACTCAATAATGTTTACTGAACTAATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGATTTTTATGTTTTACTCAATAATGTTTACTGAACTAATGAAA  50

seq1  CCTTCATTTGGTAATGTTTTCATGTAAAAGTTACTTTTACTATTAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTTGGTAATGTTTTCATGTAAAAGTTACTTTTACTATTAAGTCT  100

seq1  TATATTACACTGCTTGTTTCTAATATTATAAGATACCATTATGTTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACACTGCTTGTTTCTAATATTATAAGATACCATTATGTTTATAA  150

seq1  TTTAATCTAATCCTAATTTTAAAATATTTTCCAGATAATACTTGGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTAATCCTAATTTTAAAATATTTTCCAGATAATACTTGGTGACA  200

seq1  TATCTTTTAAATTTCATTATGATTCTGTCCTCTCTCTGAGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTAAATTTCATTATGATTCTGTCCTCTCTCTGAGTGTGTGTGTG  250

seq1  TGTGTGTGTGTGTGTGTATGTGTG  274
      ||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTATGTGTG  274