BAC Information

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BAC

Clone NameB6Ng01-005D05
Chromosome5 (Build37)2 (Build37)
Map Location 64,379,953 - 64,380,785143,554,582 - 143,555,141
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743
Downstream geneLOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D05.bB6Ng01-005D05.g
ACCDH842402DH842403
length8331,009
definitionDH842402|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D05, 5' end.DH842403|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,379,953 - 64,380,785)(143,554,582 - 143,555,141)
sequence
gaattcaaggtaagaactaatgcaggggccatgaagggatggtacttact
ggcttgcttccccatggcttactcgttttgctttcttatagcacccagga
ccacgggtttagaagtggcactgcccacagtgggtaaactatgagcaaaa
taaattcctcattaagtgtagtttttgtcagagcaataagaaaagcaact
catacaaaccttaatgtccttagcataactgggcagcagctatactcggc
tgcagacaaaattctctgaagggtagatagatagatagatagatagatag
atagatagatagatagatttgttattttatatgtgtgaacattttgccta
tatgtatgtatgttcaccttgtgcattattgatgccggtggagactggaa
gaggatgtcagaacctctggaactggacttacagatggttgtaaactgcc
atgtgggttctggaaaccactgacccatctctgaaatccctagttcaatt
ctctctctctctctctctctctctctctctccttccctccctctctccct
ccctcgctccctgtcaggcaatagtgatctatcaacaaacagtataatgt
ctaaggggcctgaaaagatgaaaagggaagctaaagcatttatggaaata
ctctggatcttcccaagtagtggttctctgctcctgtttgagatattcac
ccatgtctgttagtcaagctatcactagccacttgccttttccacttgat
tcactacaaacgcctgctctcacctggcccacacttgattctgcccttga
ctagcactagaggatctttcgaaaagcacaaat
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtgtagctaagggttatctat
cttgttgattttctcaaagaaccaactccttcgttggttaattctttgaa
tagttcttcttgtttcacttggttgattcaccctgagtttggtttatttt
ctgccgtctactcctctggggtgaatttgcttcctttttttctgaagctt
ttagattgtgtgtcagctgctaggatgtgctcttctcccgtttttcttga
aggacctcatagctatgagtttcctctagatgctttcattgtgttccaaa
ggttggtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64379953_64380785
seq2: B6Ng01-005D05.b_46_878

seq1  GAATTCAAGGTAAGAACTAATGCAGGGGCCATGAAGGGATGGTACTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTAAGAACTAATGCAGGGGCCATGAAGGGATGGTACTTACT  50

seq1  GGCTTGCTTCCCCATGGCTTACTCGTTTTGCTTTCTTATAGCACCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTTCCCCATGGCTTACTCGTTTTGCTTTCTTATAGCACCCAGGA  100

seq1  CCACGGGTTTAGAAGTGGCACTGCCCACAGTGGGTAAACTATGAGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGTTTAGAAGTGGCACTGCCCACAGTGGGTAAACTATGAGCAAAA  150

seq1  TAAATTCCTCATTAAGTGTAGTTTTTGTCAGAGCAATAAGAAAAGCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTCATTAAGTGTAGTTTTTGTCAGAGCAATAAGAAAAGCAACT  200

seq1  CATACAAACCTTAATGTCCTTAGCATAACTGGGCAGCAGCTATACTCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAACCTTAATGTCCTTAGCATAACTGGGCAGCAGCTATACTCGGC  250

seq1  TGCAGACAAAATTCTCTGAAGGGTAGATAGATAGATAGATAGATAGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAAAATTCTCTGAAGGGTAGATAGATAGATAGATAGATAGATAG  300

seq1  ATAGATAGATAGATAGATTTGTTATTTTATATGTGTGAACATTTTGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATTTGTTATTTTATATGTGTGAACATTTTGCCTA  350

seq1  TATGTATGTATGTTCACCTTGTGCATTATTGATGCCGGTGGAGACTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATGTTCACCTTGTGCATTATTGATGCCGGTGGAGACTGGAA  400

seq1  GAGGATGTCAGAACCTCTGGAACTGGACTTACAGATGGTTGTAAACTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTCAGAACCTCTGGAACTGGACTTACAGATGGTTGTAAACTGCC  450

seq1  ATGTGGGTTCTGGAAACCACTGACCCATCTCTGAAATCCCTAGTTCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTTCTGGAAACCACTGACCCATCTCTGAAATCCCTAGTTCAATT  500

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCCTCCCTCTCTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCCTCCCTCTCTCCCT  550

seq1  CCCTCGCTCCCTGTCAGGCAATAGTGATCTATCAACAAACAGTATAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGCTCCCTGTCAGGCAATAGTGATCTATCAACAAACAGTATAATGT  600

seq1  CTAAGGGGCCTGAAAAGATGAAAAGGGAAGCTAAAGCATTTATGGAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGGCCTGAAAAGATGAAAAGGGAAGCTAAAGCATTTATGGAAATA  650

seq1  CTCTGGATCTTCCCAAGTAGTGGTTCTCTGCTCCTGTTTGAGATATTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATCTTCCCAAGTAGTGGTTCTCTGCTCCTGTTTGAGATATTCAC  700

seq1  CCATGTCTGTTAGTCAAGCTATCACTAGCCACTTGCCTTTTCCACTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTGTTAGTCAAGCTATCACTAGCCACTTGCCTTTTCCACTTGAT  750

seq1  TCACTACAAACGCCTGCTCTCACCTGGCCCACACTTGATTCTGCCCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACAAACGCCTGCTCTCACCTGGCCCACACTTGATTCTGCCCTTGA  800

seq1  CTAGCACTAGAGGATCTTTCGAAAAGCACAAAT  833
      |||||||||||||||||||||||||||||||||
seq2  CTAGCACTAGAGGATCTTTCGAAAAGCACAAAT  833

seq1: chr2_143554582_143555141
seq2: B6Ng01-005D05.g_528_1077 (reverse)

seq1  GTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCA  50
      |||||  ||||||||| ||||||||||||||| |   ||| |||||||||
seq2  GTACC--AACCTTTGGAACACAATGAAAGCATCT---AGA-GGAAACTCA  44

seq1  TAGCTATGAGTGCCTTCAAGAAAAAACGGGAG-AGAGCACATACTAGCAG  99
      ||||||||||  |||||||| ||||||||||| ||||||||| |||||||
seq2  TAGCTATGAGGTCCTTCAAG-AAAAACGGGAGAAGAGCACATCCTAGCAG  93

seq1  CTTGACAACAC-ATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCC  148
      | |||| |||| |||||||||||  |||||||||||||||||||||||||
seq2  C-TGAC-ACACAATCTAAAAGCTTCAGAAAAAAAGGAAGCAAATTCACCC  141

seq1  AAGAGGAGTAGACGGCAGGAAAT-AATCAAACTCAGGGGTGAAATCAACC  197
       ||||||||||||||||| |||| || |||||||| ||||| ||||||||
seq2  CAGAGGAGTAGACGGCAGAAAATAAACCAAACTCA-GGGTG-AATCAACC  189

seq1  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGG  247
      |||| |||||||||||||||||||||||||||||||||   |||||||||
seq2  AAGT-GAAACAAGAAGAACTATTCAAAGAATTAACCAACGAAGGAGTTGG  238

seq1  TTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA  297
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  TTCTTTGAGAAAATCAACAAGATAGAT-AACCCTTAGCTACACTCACTAA  287

seq1  AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG  337

seq1  ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTAC  387

seq1  AAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATT  437

seq1  TCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTC  487

seq1  TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  537

seq1  CCAGCCAAAAAAA  560
      |||||||||||||
seq2  CCAGCCAAAAAAA  550