BAC Information

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BAC

Clone NameB6Ng01-005G05
Chromosome5 (Build37)
Map Location 76,064,046 - 76,205,113
singlet/doubletdoublet
Overlap geneEG664874
Upstream geneLnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit
Downstream geneKdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005G05.bB6Ng01-005G05.g
ACCDH842537DH842538
length954781
definitionDH842537|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G05, 5' end.DH842538|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,204,153 - 76,205,113)(76,064,046 - 76,064,823)
sequence
gaattcatccaaatgaaagtgagcctcaacacaatgaattattccagcca
cggagaatacgacatctgccagaagatatttggaagaagtgaattggtta
atgttgctccgggtttgagcaaacgtaagcgcattctcacaaagagtcat
tgcaattcgggtctttcacaaggcttagtagtttcctcttcttattattc
tgacaaaatgcttgacaaaagagacttaaggaaggaaacgtttgttttgg
cccaagctttgagggtacagttcatcaaggcagtgatgtcttggcttcag
gagcttgaagcagctgatcacatgactcgggggcagggcgggggatgggt
ggtgctcagttctctttttcttctctttcctcttctatgacatccaggtg
gggctggggaggaagagcctgcccagatcaagagtgtggttgaggcaggt
ccaaaccccagtaatcttgtcctgagtttggcgggaggatcactgctccc
ctgacccaggcacaggtagccaggtcgcactgtccagtagccaggttaag
cttccgctccacttataaggtcgtgttcagccgcacctggaattcctcct
tatgcaaatgaggcagccccagcaccttggcctcagccaaagatgtacac
acacccgggaagcccctacccaccttccaaaggcataaattgctgtctca
ctcacgcttcctccctgagagtctgttctctttgcattcacctctgctgg
aggcttcttctgctcctggccattcctgccttatttcttctcagagggaa
acagaacctgagcaacatactggttccctgctcacgagagggtgctgctc
agtttgggctttcctcctcattcaaccttttaggaaatatcatcacacct
gtgcgcatgctcacacacacaccagtttgtttcttggtgattctaaatcc
tgtc
gaattcatagttatggaacctgcaaacttagaggtctggaatatttgctt
aattctttctcttccgtagcaaatcaatgataactttgatatggtttctc
ccatacctttctacttttatgtgtgcatttcttaaagaaataaattatca
gcttacattttaatgaacactggcttatagaaattactccatgtcactgt
aaatcactgtaattgttcatattatggtcacaaagagaaatctaataatt
ccaggtaagactttgctgattggctctggaaagtctgagatctggttttc
ttccgtccacttctaccctacatggaagctggcatatatctgggttaaaa
gctacatcaggggatgtaagtaaaatttgactttagtcagtttattaaat
aaagataatccacatgagaaagcctagcgctgggctgggagaagtgtgtg
tgctcattaaaagttaattaaatctgaaaatataatcggctttaataagt
aaaagtatcctgagaaaaaagtcgggataccagcgtgcctgggttgattt
ttattggatgtatttttaaaagaaaattgctagccttttggggtgtctaa
aggcaactagaagaaaaggagtcattttccaatcacacccatactttacg
gttcagctgcctgtggttaaaaataaaggcaaccacgccagggtatcatt
aggtagtcgcctttcttataacattaggctatcactttttcctttgaatt
gctgtcccagggattcaccccccttccccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_76204153_76205113
seq2: B6Ng01-005G05.b_46_999 (reverse)

seq1  GACAGGATTTAGAATCACCAAGGAGACAAACTGGTGTGTGTGTGAGCATG  50
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  GACAGGATTTAGAATCACCAA-GAAACAAACTGGTGTGTGTGTGAGCATG  49

seq1  CGCACAGGTGTGATGATATTTCCTAAAAGGTTGAATTGAGGAGGAAAGAC  100
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  CGCACAGGTGTGATGATATTTCCTAAAAGGTTGAA-TGAGGAGGAAAG-C  97

seq1  CCAAACTGAGCAGCACCCTCTCGTGAGCAGGGAACCAGTATGTTTGCTCA  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAAACTGAGCAGCACCCTCTCGTGAGCAGGGAACCAGTATG-TTGCTCA  146

seq1  GGTTCTGTTTCCCCTCCTGAGAGGAAATAAAGGCAGGAATGGCCAGGAGC  200
      |||||||||||||   |||||| ||||| |||||||||||||||||||||
seq2  GGTTCTGTTTCCC--TCTGAGAAGAAAT-AAGGCAGGAATGGCCAGGAGC  193

seq1  AGAAGAAGCCTCCAGCAGAGGTGAATGCAAAGAGAACAGACTCTCAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGCCTCCAGCAGAGGTGAATGCAAAGAGAACAGACTCTCAGGGA  243

seq1  GGAAGCGTGAGTGAGACAGCAATTTATGCCTTTGGAAGGTGGGTAGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGTGAGTGAGACAGCAATTTATGCCTTTGGAAGGTGGGTAGGGGC  293

seq1  TTCCCGGGTGTGTGTACATCTTTGGCTGAGGCCAAGGTGCTGGGGCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGGGTGTGTGTACATCTTTGGCTGAGGCCAAGGTGCTGGGGCTGCC  343

seq1  TCATTTGCATAAGGAGGAATTCCAGGTGCGGCTGAACACGACCTTATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCATAAGGAGGAATTCCAGGTGCGGCTGAACACGACCTTATAAG  393

seq1  TGGAGCGGAAGCTTAACCTGGCTACTGGACAGTGCGACCTGGCTACCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGGAAGCTTAACCTGGCTACTGGACAGTGCGACCTGGCTACCTGT  443

seq1  GCCTGGGTCAGGGGAGCAGTGATCCTCCCGCCAAACTCAGGACAAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTCAGGGGAGCAGTGATCCTCCCGCCAAACTCAGGACAAGATTA  493

seq1  CTGGGGTTTGGACCTGCCTCAACCACACTCTTGATCTGGGCAGGCTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTTGGACCTGCCTCAACCACACTCTTGATCTGGGCAGGCTCTTC  543

seq1  CTCCCCAGCCCCACCTGGATGTCATAGAAGAGGAAAGAGAAGAAAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGCCCCACCTGGATGTCATAGAAGAGGAAAGAGAAGAAAAAGAG  593

seq1  AACTGAGCACCACCCATCCCCCGCCCTGCCCCCGAGTCATGTGATCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCACCACCCATCCCCCGCCCTGCCCCCGAGTCATGTGATCAGCT  643

seq1  GCTTCAAGCTCCTGAAGCCAAGACATCACTGCCTTGATGAACTGTACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAGCTCCTGAAGCCAAGACATCACTGCCTTGATGAACTGTACCCT  693

seq1  CAAAGCTTGGGCCAAAACAAACGTTTCCTTCCTTAAGTCTCTTTTGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTGGGCCAAAACAAACGTTTCCTTCCTTAAGTCTCTTTTGTCAA  743

seq1  GCATTTTGTCAGAATAATAAGAAGAGGAAACTACTAAGCCTTGTGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGTCAGAATAATAAGAAGAGGAAACTACTAAGCCTTGTGAAAGA  793

seq1  CCCGAATTGCAATGACTCTTTGTGAGAATGCGCTTACGTTTGCTCAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAATTGCAATGACTCTTTGTGAGAATGCGCTTACGTTTGCTCAAACC  843

seq1  CGGAGCAACATTAACCAATTCACTTCTTCCAAATATCTTCTGGCAGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCAACATTAACCAATTCACTTCTTCCAAATATCTTCTGGCAGATGT  893

seq1  CGTATTCTCCGTGGCTGGAATAATTCATTGTGTTGAGGCTCACTTTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTCTCCGTGGCTGGAATAATTCATTGTGTTGAGGCTCACTTTCATT  943

seq1  TGGATGAATTC  961
      |||||||||||
seq2  TGGATGAATTC  954

seq1: chr5_76064046_76064823
seq2: B6Ng01-005G05.g_69_849

seq1  GAATTCATAGTTATGGAACCTGCAAACTTAGAGGTCTGGAATATTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTATGGAACCTGCAAACTTAGAGGTCTGGAATATTTGCTT  50

seq1  AATTCTTTCTCTTCCGTAGCAAATCAATGATAACTTTGATATGGTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTCTCTTCCGTAGCAAATCAATGATAACTTTGATATGGTTTCTC  100

seq1  CCATACCTTTCTACTTTTATGTGTGCATTTCTTAAAGAAATAAATTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTTTCTACTTTTATGTGTGCATTTCTTAAAGAAATAAATTATCA  150

seq1  GCTTACATTTTAATGAACACTGGCTTATAGAAATTACTCCATGTCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATTTTAATGAACACTGGCTTATAGAAATTACTCCATGTCACTGT  200

seq1  AAATCACTGTAATTGTTCATATTATGGTCACAAAGAGAAATCTAATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTGTAATTGTTCATATTATGGTCACAAAGAGAAATCTAATAATT  250

seq1  CCAGGTAAGACTTTGCTGATTGGCTCTGGAAAGTCTGAGATCTGGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAGACTTTGCTGATTGGCTCTGGAAAGTCTGAGATCTGGTTTTC  300

seq1  TTCCGTCCACTTCTACCCTACATGGAAGCTGGCATATATCTGGGTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTCCACTTCTACCCTACATGGAAGCTGGCATATATCTGGGTTAAAA  350

seq1  GCTACATCAGGGGATGTAAGTAAAATTTGACTTTAGTCAGTTTATTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCAGGGGATGTAAGTAAAATTTGACTTTAGTCAGTTTATTAAAT  400

seq1  AAAGATAATCCACATGAGAAAGCCTAGCGCTGGGCTGGGAGAAGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAATCCACATGAGAAAGCCTAGCGCTGGGCTGGGAGAAGTGTGTG  450

seq1  TGCTCATTAAAAGTTAATTAAATCTGAAAATATAATCGGCTTTAATAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTAAAAGTTAATTAAATCTGAAAATATAATCGGCTTTAATAAGT  500

seq1  AAAAGTATCCTGAGAAAAAAGTCGGGATACCAGCGTGCCTGGGTTGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCCTGAGAAAAAAGTCGGGATACCAGCGTGCCTGGGTTGATTT  550

seq1  TTATTGGATGTATTTTTAAAAGAAAATTGCTAGCCTTTTGGGGTGTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGATGTATTTTTAAAAGAAAATTGCTAGCCTTTTGGGGTGTCTAA  600

seq1  AGGCAACTAGAAGAAAAGGAGTCATTTTCCAATCACACCCATACTTTACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTAGAAGAAAAGGAGTCATTTTCCAATCACACCCATACTTTACG  650

seq1  GTTCAGCTGCCTGTGGTT-AAAATAAAGGCAAACCACGCCAGGGTAGCAT  699
      |||||||||||||||||| ||||||||||| ||||||||||||||| |||
seq2  GTTCAGCTGCCTGTGGTTAAAAATAAAGGC-AACCACGCCAGGGTATCAT  699

seq1  TAGGTAGTCGCCCTTCTTATAACAATAGGCTATCAC-TTTTCCTTTGAAT  748
      |||||||||||| ||||||||||| ||||||||||| |||||||||||||
seq2  TAGGTAGTCGCCTTTCTTATAACATTAGGCTATCACTTTTTCCTTTGAAT  749

seq1  TGCTGT-CCAGGGAGTGCACCCCC--TCCCCCA  778
      |||||| ||||||| | |||||||  |||||||
seq2  TGCTGTCCCAGGGA-TTCACCCCCCTTCCCCCA  781