BAC Information

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BAC

Clone NameB6Ng01-005J15
Chromosome5 (Build37)
Map Location 44,338,507 - 44,480,633
singlet/doubletdoublet
Overlap geneFgfbp1, Prom1
Upstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179
Downstream geneLOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005J15.bB6Ng01-005J15.g
ACCDH842693DH842694
length865497
definitionDH842693|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J15, 5' end.DH842694|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,338,507 - 44,339,367)(44,480,131 - 44,480,633)
sequence
ctcatagcatgctctgctttttttccttacagttaatttgctacatagct
ggtcgctagtcattcatcatctaacctccccaatcccggaaacgtatgcc
tcatggtacagcaacaccttggagccctgtctagctccgtgtatttgttg
actgaagggtaagtcaacgtgaagggacacagtagtctcttgaaaagcta
tgaaggtaggttgggcctggcagtcgccagggagaagggactttcctcat
cctatccaactcagctgtcaactgatctcttaggggttaagagaaaaaga
aatgcagagactccacttcctggcctgtcattttactaattgcttaaagt
caccctcccttgatctctggttcctcatttgcaacttgaaagcaaagcac
aggtttccaaggagattagaaaataagtttgcacagaagcagggtctgtc
gtttctcaaaatccctgccgatcttaattaatgtggtataacagagagcc
cacgggtgcccccctagagtgtgtcagagtcacataaataacctggctcc
aaggaagtacgaggtgtaggaagggggtggctgtctcccacttctcccag
tcttcccatataaaactctccttccaattacctctcattttcagtctttg
taactttaagaggcaaataatttttgttaaagccaaccccccttaaaaat
taatgataaaaaccatctctcctccctacttctcctaaggaatgtaggtg
gctgcctttctagccagatggggcctcgaaaggaatgagctaggggaaat
cttggcagatctggggtgcaggtcccagagttagtgtttaaaaaagaagg
gaccctcccggttcc
actgaaattgtcacaatttttggaggtaggtggagtgtcataggtgccat
aggcggagtgtcagttataatcatatatctcttcgctggttgggggactg
aggcggaaagagtacatattcaagttgctagaaagaggcggactgagaaa
gacctttgttttgggggactagttatttctctagtaaaccttggtttcct
gcaggtaatctctttttccttttattttaataaaataaccaggagttaga
cattacaacaaaaacaaaactaacaacaaatgaaaagaacaacagccaga
atttaaaaaatgaaagaattaaaataaccacgagtcaatatgaaaaatga
taagactttgcatgtgacatgtaggcattccagactgcccactgcgggtg
ttaaattgtgcctcttctaattttatgtggcaacatgaatttgttctaag
gtaacattctgaggaagcatgcaaaggggtggggtttggggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_44338507_44339367
seq2: B6Ng01-005J15.b_55_919

seq1  CTCATAGCATGCTCTGCTTTTTTTCCTAACAGTTAATTTGCTACATAGCT  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCATAGCATGCTCTGCTTTTTTTCCTTACAGTTAATTTGCTACATAGCT  50

seq1  GGTCGCTAGTCATTCATCATCTAACCTCCCCAATCCCGGAAACGTATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCTAGTCATTCATCATCTAACCTCCCCAATCCCGGAAACGTATGCC  100

seq1  TCATGGTACAGCAACACCTTGGAGCCCTGTCTAGCTCCGTGTATTTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTACAGCAACACCTTGGAGCCCTGTCTAGCTCCGTGTATTTGTTG  150

seq1  ACTGAAGGGTAAGTCAACGTGAAGGGACACAGTAGTCTCTTGAAAAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGTAAGTCAACGTGAAGGGACACAGTAGTCTCTTGAAAAGCTA  200

seq1  TGAAGGTAGGTTGGGCCTGGCAGTCGCCAGGGAGAAGGGACTTTCCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTAGGTTGGGCCTGGCAGTCGCCAGGGAGAAGGGACTTTCCTCAT  250

seq1  CCTATCCAACTCAGCTGTCAACTGATCTCTTAGGGGTTAAGAGAAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCAACTCAGCTGTCAACTGATCTCTTAGGGGTTAAGAGAAAAAGA  300

seq1  AATGCAGAGACTCCACTTCCTGGCCTGTCATTTTACTAATTGCTTAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAGACTCCACTTCCTGGCCTGTCATTTTACTAATTGCTTAAAGT  350

seq1  CACCCTCCCTTGATCTCTGGTTCCTCATTTGCAACTTGAAAGCAAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCCTTGATCTCTGGTTCCTCATTTGCAACTTGAAAGCAAAGCAC  400

seq1  AGGTTTCCAAGGAGATTAGAAAATAAGTTTGCACAGAAGCAGGGTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCAAGGAGATTAGAAAATAAGTTTGCACAGAAGCAGGGTCTGTC  450

seq1  GTTTCTCAAAATCCCTGCCGATCTTAATTAATGTGGTATAACAGAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAAAATCCCTGCCGATCTTAATTAATGTGGTATAACAGAGAGCC  500

seq1  CACGGGTGCCCCCCTAGAGTGTGTCAGAGTCACATAAATAACCTGGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTGCCCCCCTAGAGTGTGTCAGAGTCACATAAATAACCTGGCTCC  550

seq1  AAGGAAGTACGAGGTGTAGGAAGGGGGTGGCTGTCTCCCACTTCTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTACGAGGTGTAGGAAGGGGGTGGCTGTCTCCCACTTCTCCCAG  600

seq1  TCTTCCCATAT-AAACTCTCCTTCCAATTACCTCTCATTTTCAGTCTTTG  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATATAAAACTCTCCTTCCAATTACCTCTCATTTTCAGTCTTTG  650

seq1  TAAC-TTAAGAGGCAAAATAATTTTTGTTAAAGCCAA-CCCCCTTAAAAA  697
      |||| ||||||||| |||||||||||||||||||||| ||||||||||||
seq2  TAACTTTAAGAGGC-AAATAATTTTTGTTAAAGCCAACCCCCCTTAAAAA  699

seq1  -TAATGATAAAAACCATCTC-CCTCCCTACTTCT-CTTAGGAATGTAGGT  744
       ||||||||||||||||||| ||||||||||||| || ||||||||||||
seq2  TTAATGATAAAAACCATCTCTCCTCCCTACTTCTCCTAAGGAATGTAGGT  749

seq1  GGCTGCCTTTCTAGCCAGATGGGGCCTCGAAAGGAATGAGCTAGGGGAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTTTCTAGCCAGATGGGGCCTCGAAAGGAATGAGCTAGGGGAAA  799

seq1  TCTTGGCAGATCTGGGGTGCAGGTTCCCAGAGCTAGGGCTGAGAAAAGAA  844
      ||||||||||||||||||||||| |||||||| ||| | | | |||||||
seq2  TCTTGGCAGATCTGGGGTGCAGG-TCCCAGAGTTAGTGTTTAAAAAAGAA  848

seq1  GGGACCCGCCCGGTTCC  861
      ||||||| |||||||||
seq2  GGGACCCTCCCGGTTCC  865

seq1: chr5_44480131_44480633
seq2: B6Ng01-005J15.g_68_570 (reverse)

seq1  CCCACCCCCCAAACCCCACCCCTTTGCATGCTTCCTCAGAATGTTACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCCAAACCCCACCCCTTTGCATGCTTCCTCAGAATGTTACCTT  50

seq1  AGAACAAATTCATGTTGCCACATAAAATTAGAAGAGGCACAATTTAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATTCATGTTGCCACATAAAATTAGAAGAGGCACAATTTAACAC  100

seq1  CCGCAGTGGGCAGTCTGGAATGCCTACATGTCACATGCAAAGTCTTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGTGGGCAGTCTGGAATGCCTACATGTCACATGCAAAGTCTTATCA  150

seq1  TTTTTCATATTGACTCGTGGTTATTTTAATTCTTTCATTTTTTAAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATATTGACTCGTGGTTATTTTAATTCTTTCATTTTTTAAATTCT  200

seq1  GGCTGTTGTTCTTTTCATTTGTTGTTAGTTTTGTTTTTGTTGTAATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGTTCTTTTCATTTGTTGTTAGTTTTGTTTTTGTTGTAATGTCT  250

seq1  AACTCCTGGTTATTTTATTAAAATAAAAGGAAAAAGAGATTACCTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGGTTATTTTATTAAAATAAAAGGAAAAAGAGATTACCTGCAGG  300

seq1  AAACCAAGGTTTACTAGAGAAATAACTAGTCCCCCAAAACAAAGGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGGTTTACTAGAGAAATAACTAGTCCCCCAAAACAAAGGTCTTT  350

seq1  CTCAGTCCGCCTCTTTCTAGCAACTTGAATATGTACTCTTTCCGCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCGCCTCTTTCTAGCAACTTGAATATGTACTCTTTCCGCCTCAG  400

seq1  TCCCCCAACCAGCGAAGAGATATATGATTATAACTGACACTCCGCCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAACCAGCGAAGAGATATATGATTATAACTGACACTCCGCCTATG  450

seq1  GCACCTATGACACTCCACCTACCTCCAAAAATTGTGACAATTTCAGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTATGACACTCCACCTACCTCCAAAAATTGTGACAATTTCAGTGAA  500

seq1  TTC  503
      |||
seq2  TTC  503