BAC Information

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BAC

Clone NameB6Ng01-005L20
Chromosome5 (Build37)
Map Location 61,508,756 - 61,634,014
singlet/doubletdoublet
Overlap geneLOC666597
Upstream geneCbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L20.bB6Ng01-005L20.g
ACCDH842794DH842795
length1,1241,086
definitionDH842794|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L20, 5' end.DH842795|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,508,756 - 61,509,909)(61,632,905 - 61,634,014)
sequence
gaattcccttctaaccctttcatgggaaagggcccacctatttactaggc
ctttgtgtattcctgtgtgtgggtgtgactcagttattgtcctaagtcat
tactgtgcagactagcccagagcttttctattcaagtaaatggcaatgcc
tgattattttcagtttctctacttgatgtggatttgaatcttactgaata
ggtaacattcttactgaattccaagctcagggtcagcttcaaggaatgtc
taggtggaggcttagctatatgtcaaaatcaatcctaaaaggcacttata
ataaaacaatactgaaagagagcacacagatccatacaccagactaacga
ggggacaggttttaagtataacaggctatgggaatgccaaggttccaaga
tgctgtttccgtgaaactcttttcctcttgactgcttccaggcttttagg
ccttctaatgcctgtcactactggagtggatgcagcatcccactatatta
aaaatattttttctatagacctgcttttgtgccatacttttagtccaggc
cagtatcttaatctttcattatttccttttatgatcaagacaaagcttac
ttcattgcatttgctcattaatatgtgcttaattacaaatgatttaaaaa
gaatgtgtaatactctccatttcctataagctaaaattctctgcaaacca
aaagaggaaacaaagggtgtagaaaaataagggagtcaatgtctagagtg
tttccatcaccgattgttgggccaggaaacatttgtgaactctaaaagac
accaaggagcagaatgccatgcaatctcacaaccctgacacagcaggaaa
gtggagccctgagcctagttttaggcagtcatttatagaggcaagaaagg
ggtatcttgcctggtacacattagattaggggtcattattgcctttacct
taatgctgtgctaggagccaaacacaaccttaacttctgtttctctgatg
ttgtatagcagtgatgtgcagggctgttgcagtctgagtgcaagattgtg
ggaatatctgaaagtgatgctagacatggccttggttagataacttgaac
tgatgctagtactgtctttagtta
gaattcttctcctctttcattattgtacttaataccttttgtcaatattc
tgcttttgttaacatatccctattgtctcaaattccacatggacaagttc
tgaaatcccatcaaaagtcacataacaaaaattttataggcagcctaata
ggacaaaattagtttaaactgaataagcacacaaaattgagccagtgtga
cagaagactacatcttaaaggagattaaggacagtgtgaatatgacaaat
ttcaatgtatgaaatctaatatttataaaataaattattttatttttaaa
aatgatttatttatttatttatttatttacactccagattttattcttct
cccagcacactcttcaattgtattttaaaacatttatgtataagtatctt
tcactgaactctcttttctaaaaattggaacaaaatattatgtagtagta
aatcttactttaaaagttaatgtattaatcaagatttttaatttttttgt
ttcttttaaaattgcatacaagtatacaatgtatttgtatcatatctaac
tcaaacatcatttctatttttttcccagaacatccttcttccaggatgcc
ctgccaagcctcatactttctttagaaaagtggtagtttaaatttatgca
gttatatttcttgttctctcaaaacattgtagctaataaaatatttttaa
caaattatgaccttctattttattgagcatactacaatttaaaaaatagg
aaaattaattttaagaattgtttttgtgattcttttttattggctatttt
atttatttacatttcaaatgctatcccccttccgagtttcccctccccaa
acaccctttctcattccactccccctgcttctatgagggtactccctcac
ccacccacctactcctatcattcccctacattgagcatgaatctccacag
accagggtctctctcccactgatgtcatcagccatctctgctacatagca
tgggtccctcatgtgtacgcttggttggtgtttagtcctgtgagctctgg
gagctggtggttgatttgtttctctatggggtgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61508756_61509909
seq2: B6Ng01-005L20.b_47_1170

seq1  GAATTCCCTTCTAACCCTTTCATGGGAAAGGGCCCACCTATTTACTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCTAACCCTTTCATGGGAAAGGGCCCACCTATTTACTAGGC  50

seq1  CTTTGTGTATTCCTGTGTGTGGGTGTGACTCAGTTATTGTCCTAAGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTATTCCTGTGTGTGGGTGTGACTCAGTTATTGTCCTAAGTCAT  100

seq1  TACTGTGCAGACTAGCCCAGAGCTTTTCTATTCAAGTAAATGGCAATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCAGACTAGCCCAGAGCTTTTCTATTCAAGTAAATGGCAATGCC  150

seq1  TGATTATTTTCAGTTTCTCTACTTGATGTGGATTTGAATCTTACTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTTCAGTTTCTCTACTTGATGTGGATTTGAATCTTACTGAATA  200

seq1  GGTAACATTCTTACTGAATTCCAAGCTCAGGGTCAGCTTCAAGGAATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACATTCTTACTGAATTCCAAGCTCAGGGTCAGCTTCAAGGAATGTC  250

seq1  TAGGTGGAGGCTTAGCTATATGTCAAAATCAATCCTAAAAGGCACTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGAGGCTTAGCTATATGTCAAAATCAATCCTAAAAGGCACTTATA  300

seq1  ATAAAACAATACTGAAAGAGAGCACACAGATCCATACACCAGACTAACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAATACTGAAAGAGAGCACACAGATCCATACACCAGACTAACGA  350

seq1  GGGGACAGGTTTTAAGTATAACAGGCTATGGGAATGCCAAGGTTCCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGGTTTTAAGTATAACAGGCTATGGGAATGCCAAGGTTCCAAGA  400

seq1  TGCTGTTTCCGTGAAACTCTTTTCCTCTTGACTGCTTCCAGGCTTTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTCCGTGAAACTCTTTTCCTCTTGACTGCTTCCAGGCTTTTAGG  450

seq1  CCTTCTAATGCCTGTCACTACTGGAGTGGATGCAGCATCCCACTATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAATGCCTGTCACTACTGGAGTGGATGCAGCATCCCACTATATTA  500

seq1  AAAATATTTTTTCTATAGACCTGCTTTTGTGCCATACTTTTAGTCCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTTTCTATAGACCTGCTTTTGTGCCATACTTTTAGTCCAGGC  550

seq1  CAGTATCTTAATCTTTCATTATTTCCTTTTATGATCAAGACAAAGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTAATCTTTCATTATTTCCTTTTATGATCAAGACAAAGCTTAC  600

seq1  TTCATTGCATTTGCTCATTAATATGTGCTTAATTACAAATGATTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCATTTGCTCATTAATATGTGCTTAATTACAAATGATTTAAAAA  650

seq1  GAATGTGTAATACTCTCCATTTCCTATAAGCTAAAATTCTCTGCAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTAATACTCTCCATTTCCTATAAGCTAAAATTCTCTGCAAACCA  700

seq1  AAAGAGGAAACAAAGGGTGTAGAAAAATAAGGGAGTCAATGTCTAGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAAACAAAGGGTGTAGAAAAATAAGGGAGTCAATGTCTAGAGTG  750

seq1  TTTCCATCACCGATTGTTGGGCCAGGAAACATTTGTGAACTCTAAAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCACCGATTGTTGGGCCAGGAAACATTTGTGAACTCTAAAAGAC  800

seq1  ACCAAGGAGCAGAATGCCATGCAATCTCACAACCCTGACACAGCAGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACCAAGGAGCAGAATGCCATGCAATCTCACAACCCTGACACAGCAGGAAA  850

seq1  GTGGAGCCCTGAGCCTAGTTTTAGGCAGTCATTTATAGAGGCAAGAAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGGAGCCCTGAGCCTAGTTTTAGGCAGTCATTTATAGAGGCAAGAAAGG  900

seq1  GGTATCTTGCCTGGTACACATTAGATTAGGGGGTCATTATTGCCTTTACC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTATCTTGCCTGGTACACATTAGATTA-GGGGTCATTATTGCCTTTACC  949

seq1  TTAATTGGCTGGTGCTAGGAGCCAAACCACAACCTTAACTTCTGTTTTCT  1000
      |||||  ||| ||||||||||||||| ||||||||||||||||| |||||
seq2  TTAAT--GCT-GTGCTAGGAGCCAAA-CACAACCTTAACTTCTG-TTTCT  994

seq1  TCCTGATTGTTTGTTATTAGCAAGTGATGTGCCAGGGGCTGGTTGCAGTC  1050
        |||||   ||||   |||| ||||||||||   ||||| |||||||||
seq2  --CTGAT--GTTGT--ATAGC-AGTGATGTGC--AGGGCT-GTTGCAGTC  1034

seq1  TGAGGGTGCAGATTTGTTGGGGAATAATCTGGAAAGTGATGCTAGACATG  1100
      |||  |||||   ||||  |||||| |||| |||||||||||||||||| 
seq2  TGA--GTGCAAGATTGT--GGGAAT-ATCT-GAAAGTGATGCTAGACAT-  1077

seq1  GGTCTTGTTTAGGGATAACCTGGAAACTGATGCTAGGTACTGGCCTGTTA  1150
      || |||| |||  |||||| ||  ||||||||||| |||||| |   |||
seq2  GGCCTTGGTTA--GATAACTTG--AACTGATGCTA-GTACTGTC--TTTA  1120

seq1  GTTA  1154
      ||||
seq2  GTTA  1124

seq1: chr5_61632905_61634014
seq2: B6Ng01-005L20.g_67_1152 (reverse)

seq1  TTGCAACCCCATAGGAAGAAAAACAATATCAACCAACCAGGCTTCCCAGA  50
      |||| |||||||    ||| |||||| ||||||| |||||   |||||||
seq2  TTGC-ACCCCAT----AGAGAAACAA-ATCAACC-ACCAG--CTCCCAGA  41

seq1  GCTCACAGGGACTAAACCACCAACCAAGGCGTACACATGGAGGGACCCAT  100
      ||||||| |||||||| |||||||||| |||||||||| |||||||||| 
seq2  GCTCACA-GGACTAAA-CACCAACCAA-GCGTACACAT-GAGGGACCCA-  86

seq1  TGCTTATGTAGCAGAAGATGGCCTTGATGGACATCAGTGGGAGAGGAGAC  150
      ||| |||||||||| |||||||  |||| ||||||||||||||| |||||
seq2  TGC-TATGTAGCAG-AGATGGC--TGAT-GACATCAGTGGGAGA-GAGAC  130

seq1  CCTTGGTTCTGTGGAGATTCAATGCCTCAATGTAGGGGAATGATAGGAGT  200
      |||  | ||||||||||||| ||| |||||||||||||||||||||||||
seq2  CCT--GGTCTGTGGAGATTC-ATG-CTCAATGTAGGGGAATGATAGGAGT  176

seq1  AGGTGGGTGGGTGAGGGAGTACCCTCATAGAAGCAGGGGGAGTGGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTGGGTGAGGGAGTACCCTCATAGAAGCAGGGGGAGTGGAATGA  226

seq1  GAAAGGGTGTTTGGGGAGGGGAAACTCGGAAGGGGGATAGCATTTGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTGTTTGGGGAGGGGAAACTCGGAAGGGGGATAGCATTTGAAAT  276

seq1  GTAAATAAATAAAATAGCCAATAAAAAAGAATCACAAAAACAATTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAATAAAATAGCCAATAAAAAAGAATCACAAAAACAATTCTTAA  326

seq1  AATTAATTTTCCTATTTTTTAAATTGTAGTATGCTCAATAAAATAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTTCCTATTTTTTAAATTGTAGTATGCTCAATAAAATAGAAGG  376

seq1  TCATAATTTGTTAAAAATATTTTATTAGCTACAATGTTTTGAGAGAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTTGTTAAAAATATTTTATTAGCTACAATGTTTTGAGAGAACAA  426

seq1  GAAATATAACTGCATAAATTTAAACTACCACTTTTCTAAAGAAAGTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAACTGCATAAATTTAAACTACCACTTTTCTAAAGAAAGTATGA  476

seq1  GGCTTGGCAGGGCATCCTGGAAGAAGGATGTTCTGGGAAAAAAATAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCAGGGCATCCTGGAAGAAGGATGTTCTGGGAAAAAAATAGAAA  526

seq1  TGATGTTTGAGTTAGATATGATACAAATACATTGTATACTTGTATGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTGAGTTAGATATGATACAAATACATTGTATACTTGTATGCAAT  576

seq1  TTTAAAAGAAACAAAAAAATTAAAAATCTTGATTAATACATTAACTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGAAACAAAAAAATTAAAAATCTTGATTAATACATTAACTTTTA  626

seq1  AAGTAAGATTTACTACTACATAATATTTTGTTCCAATTTTTAGAAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGATTTACTACTACATAATATTTTGTTCCAATTTTTAGAAAAGAG  676

seq1  AGTTCAGTGAAAGATACTTATACATAAATGTTTTAAAATACAATTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTGAAAGATACTTATACATAAATGTTTTAAAATACAATTGAAGA  726

seq1  GTGTGCTGGGAGAAGAATAAAATCTGGAGTGTAAATAAATAAATAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGGGAGAAGAATAAAATCTGGAGTGTAAATAAATAAATAAATAA  776

seq1  ATAAATCATTTTTAAAAATAAAATAATTTATTTTATAAATATTAGATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATTTTTAAAAATAAAATAATTTATTTTATAAATATTAGATTTC  826

seq1  ATACATTGAAATTTGTCATATTCACACTGTCCTTAATCTCCTTTAAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGAAATTTGTCATATTCACACTGTCCTTAATCTCCTTTAAGATG  876

seq1  TAGTCTTCTGTCACACTGGCTCAATTTTGTGTGCTTATTCAGTTTAAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCTGTCACACTGGCTCAATTTTGTGTGCTTATTCAGTTTAAACT  926

seq1  AATTTTGTCCTATTAGGCTGCCTATAAAATTTTTGTTATGTGACTTTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCCTATTAGGCTGCCTATAAAATTTTTGTTATGTGACTTTTGA  976

seq1  TGGGATTTCAGAACTTGTCCATGTGGAATTTGAGACAATAGGGATATGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTCAGAACTTGTCCATGTGGAATTTGAGACAATAGGGATATGTT  1026

seq1  AACAAAAGCAGAATATTGACAAAAGGTATTAAGTACAATAATGAAAGAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCAGAATATTGACAAAAGGTATTAAGTACAATAATGAAAGAGG  1076

seq1  AGAAGAATTC  1110
      ||||||||||
seq2  AGAAGAATTC  1086