BAC Information

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BAC

Clone NameB6Ng01-005L23
Chromosome5 (Build37)
Map Location 100,147,815 - 100,278,072
singlet/doubletdoublet
Overlap geneA930011G23Rik, LOC100040738, LOC666364
Upstream gene1700007G11Rik, Bmp3, Prkg2, LOC100041680, Rasgef1b
Downstream geneLOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L23.bB6Ng01-005L23.g
ACCDH842800DH842801
length1,1571,119
definitionDH842800|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L23, 5' end.DH842801|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,147,815 - 100,148,992)(100,276,940 - 100,278,072)
sequence
gaattcttcaccagcagcatggaaaatacgagtctgatggataacgcctt
gactttgccacatggcttggctccacttgacctacattgagggtacgtgt
ttgcgaagcaattgagaaataaaaagtactccggatttaattatattgca
atctgtggctgagtttcacttaagtcgcatttctaactgtcaagttcttc
aaattctgtttctgccacagtcctgtgcagaagtacatcattgtcaccat
catcatcatcatcttacataccctcagcctaagttatctgcaatatgtgt
cccatagatggaagggcaagtccctacccatggttgtcacatttctatga
aataaaatttaaaatatccagaaataaactggttcctagattctgctcaa
acagcacacgggaggttttcaaaattaagtaagcatcaattgaacatctc
tattttgttcagcaccatggaggattcagaagaaatatgtaccatgttct
agaacaaccaaggtggagaggtagcttaggccaaggtaaagaatgcgaag
caaaatggcagctgctgttacacatgccagctgccattttaactcaaccc
tcataacaacctcaccaggacagagatcattgctatctcatggttacagc
ttacaaaactgaggcacaaagcaaagatggatggaatgagggtgactcag
gtaaggagtgagggatctaaaacagtggaatccttgcttggccctgaaca
ttgaatagggttcagacaggaagggaagaagagtgacatgggctgggcag
agggtggcagtcctataagccaaggcaagaatttatacctgatgtgtgag
gacgccgagaaaataaaaacagagagtgaactggaccaggcaggtgaggc
gcccagcagacggcctcagaaaccagccagagatgtgaagaatgagagtt
attggaaagttggggtgaaagggcacaggttatgcatcatcttgtcagat
gaggacagagactcgaagataaagcattagtgactgctgtgaatacacct
acagaccactgctccttgatcacagcaggatctctatgtcgtcatgtcct
tgagtgaagactgtatatccttggagttacaaaccccagggataatgacc
agctatt
gaattctcctcctttgtcagttgatgctgtcagttgatattgcagctctt
gagacacggaagctttataaatggacttcaattattctgccttcctcgag
agctgacaaattcaatagcccagatattttatgtgagatctacaattcag
catcaaggccttgcttcccagtagaatttaagtaatgaaaacaaagcaaa
aacaggggggatgaaagtgtgtcgagccaagtccttaggagtgagtcggt
tctgagtgacgatccaagggttaggcttacgatacccacggggactgttc
tgcgcagcgctacctgctgcgtaactgtaaagaggcctttatggttgtcc
ctgacttctcacagtagagtttctctgtggttctagtagctgcagcctcc
aggaaaaatgtgttaggaataactcaatatacaaagcaaacctctatgtc
agtgtgggatgcttgcctaggatcccggcacccaggggcagcaaggcagg
atcactatgacttagaggccagtttgggctacacagtgggattttgttcg
gagctgccgtccaatggtttctatccacacacaaatctgtataatcttat
ttttagggcaccattgtccttccctaaggaacttcagcttcttctagggc
tctgcgctgtgtatgcttacggaaagtgacagcaattccaaccacgggaa
agtcctgttagtgtcttgtgaccagagattagtagtgacgggtcctgcat
gagtaagactctggcaagtgccactatctgagccctgggaagtggctgtg
cactgaactaagaatctgaagaatctaggggctcagctcagcttctgatg
cacgaatagttatttactctctattttattttaaaaactattatcatcat
ttatcttctcaatgatagtttttgaggttacatattactacatcatttct
gccttccactccctctcagatctccacactttgctttctttcaatgtatg
gctttttttcttttcttgcgattcatctatatttgtgtatacataataaa
gattgctttttaaaatacatattcacagtcacacatttgtatgaaggtgt
ttggatcatacggcctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_100147815_100148992
seq2: B6Ng01-005L23.b_44_1200

seq1  GAATTCTTCACCAGCAGCATGGAAAATACGAGTCTGATGGATAACGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACCAGCAGCATGGAAAATACGAGTCTGATGGATAACGCCTT  50

seq1  GACTTTGCCACATGGCTTGGCTCCACTTGACCTACATTGAGGGTACGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCCACATGGCTTGGCTCCACTTGACCTACATTGAGGGTACGTGT  100

seq1  TTGCGAAGCAATTGAGAAATAAAAAGTACTCCGGATTTAATTATATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGAAGCAATTGAGAAATAAAAAGTACTCCGGATTTAATTATATTGCA  150

seq1  ATCTGTGGCTGAGTTTCACTTAAGTCGCATTTCTAACTGTCAAGTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGCTGAGTTTCACTTAAGTCGCATTTCTAACTGTCAAGTTCTTC  200

seq1  AAATTCTGTTTCTGCCACAGTCCTGTGCAGAAGTACATCATTGTCACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGTTTCTGCCACAGTCCTGTGCAGAAGTACATCATTGTCACCAT  250

seq1  CATCATCATCATCTTACATACCCTCAGCCTAAGTTATCTGCAATATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCATCATCTTACATACCCTCAGCCTAAGTTATCTGCAATATGTGT  300

seq1  CCCATAGATGGAAGGGCAAGTCCCTACCCATGGTTGTCACATTTCTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGATGGAAGGGCAAGTCCCTACCCATGGTTGTCACATTTCTATGA  350

seq1  AATAAAATTTAAAATATCCAGAAATAAACTGGTTCCTAGATTCTGCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTTAAAATATCCAGAAATAAACTGGTTCCTAGATTCTGCTCAA  400

seq1  ACAGCACACGGGAGGTTTTCAAAATTAAGTAAGCATCAATTGAACATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACACGGGAGGTTTTCAAAATTAAGTAAGCATCAATTGAACATCTC  450

seq1  TATTTTGTTCAGCACCATGGAGGATTCAGAAGAAATATGTACCATGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTCAGCACCATGGAGGATTCAGAAGAAATATGTACCATGTTCT  500

seq1  AGAACAACCAAGGTGGAGAGGTAGCTTAGGCCAAGGTAAAGAATGCGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACCAAGGTGGAGAGGTAGCTTAGGCCAAGGTAAAGAATGCGAAG  550

seq1  CAAAATGGCAGCTGCTGTTACACATGCCAGCTGCCATTTTAACTCAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCAGCTGCTGTTACACATGCCAGCTGCCATTTTAACTCAACCC  600

seq1  TCATAACAACCTCACCAGGACAGAGATCATTGCTATCTCATGGTTACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAACCTCACCAGGACAGAGATCATTGCTATCTCATGGTTACAGC  650

seq1  TTACAAAACTGAGGCACAAAGCAAAGATGGATGGAATGAGGGTGACTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAACTGAGGCACAAAGCAAAGATGGATGGAATGAGGGTGACTCAG  700

seq1  GTAAGGAGTGAGGGATCTAAAACAGTGGAATCCTTGCTTGGCCCTGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGTGAGGGATCTAAAACAGTGGAATCCTTGCTTGGCCCTGAACA  750

seq1  TTGAATAGGGTTCAGACAGGAAGGGAAGAAGAGTGACATGGGCTGGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAGGGTTCAGACAGGAAGGGAAGAAGAGTGACATGGGCTGGGCAG  800

seq1  AGGGTGGCAGGTCCTATAAGCCAAGGCAAGAATTTATACCTGATGTGTGA  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCA-GTCCTATAAGCCAAGGCAAGAATTTATACCTGATGTGTGA  849

seq1  GGACGCCGAGAAAATAAAAAACAGAGAGTGAACTGGACCAGGCAGGGTGA  900
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  GGACGCCGAGAAAAT-AAAAACAGAGAGTGAACTGGACCAGGCA-GGTGA  897

seq1  GGCGCCCAGCAGACGGCCTCAGAAACCAGCCAGAAGAATGTGAAGAATGG  950
      ||||||||||||||||||||||||||||||||||   ||||||||||| |
seq2  GGCGCCCAGCAGACGGCCTCAGAAACCAGCCAGA--GATGTGAAGAAT-G  944

seq1  AGAAGTTATTGGGAAAGTTGGGGTGAAAGGGCACAGGGTTATGCATCAAC  1000
      || ||||||| |||||||||||||||||||||||| ||||||||||| | 
seq2  AG-AGTTATT-GGAAAGTTGGGGTGAAAGGGCACA-GGTTATGCATC-AT  990

seq1  CTTGTCAGGATGGAGGAACAGGGAGACTCGAAGGATAAAAGCATTAGTGA  1050
      ||||||| ||| |||| |||  |||||||||| ||| |||||||||||||
seq2  CTTGTCA-GAT-GAGG-ACA--GAGACTCGAA-GAT-AAAGCATTAGTGA  1033

seq1  CTTGCTGTGATACCACCCACAGGCCCACTGCTCCTTGGTCACAGCAGGTT  1100
      | ||||||||   |||| ||| | ||||||||||||| |||||||||| |
seq2  C-TGCTGTGAATACACCTACA-GACCACTGCTCCTTGATCACAGCAGGAT  1081

seq1  CTCAATGTCTGTCATGTCCTTGAGTGAAGACTGTATAAACCTTGAAGTTA  1150
      ||| ||||| |||||||||||||||||||||||||| | ||||| |||||
seq2  CTCTATGTC-GTCATGTCCTTGAGTGAAGACTGTAT-ATCCTTGGAGTTA  1129

seq1  CAAACCCCAGGGAGAATGAACAGCTATT  1178
      ||||||||||||| ||||| ||||||||
seq2  CAAACCCCAGGGATAATGACCAGCTATT  1157

seq1: chr5_100276940_100278072
seq2: B6Ng01-005L23.g_69_1187 (reverse)

seq1  AATAGGGGCGGTATGGATCCAAACA-CATCATACACATGTGTGAATATTG  49
      ||||  ||| |||| |||||||||| | ||||||| |||||||| |  ||
seq2  AATA--GGCCGTAT-GATCCAAACACCTTCATACAAATGTGTGACT-GTG  46

seq1  AATATTGTATTTTAAAAAGCAAATCTTTATTATGTATACACAAATATAGA  99
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATA-TGTATTTTAAAAAGC-AATCTTTATTATGTATACACAAATATAGA  94

seq1  TGAAACCGCAAGAAAAGAAAAAAAGGCCATACATTTGAGAGAAAGCAAAG  149
      || || |||||||||||||||||| |||||||| |||| |||||||||||
seq2  TG-AATCGCAAGAAAAGAAAAAAA-GCCATACA-TTGAAAGAAAGCAAAG  141

seq1  TGTGGAGGATCTGGAGAAGGGAGTGGAAGGCAGAAATGATGTAGTAATAT  199
      |||||| ||||| ||| |||||||||||||||||||||||||||||||| 
seq2  TGTGGA-GATCT-GAG-AGGGAGTGGAAGGCAGAAATGATGTAGTAATA-  187

seq1  TGTAACCTCAAAAACTATCATTGAGAAGATAAATGAATGATAATAGTTTT  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTAACCTCAAAAACTATCATTGAGAAGATAAATG-ATGATAATAGTTTT  236

seq1  TAAATTAAAATAGAGAGTAAATAACTATTCGTGCATCAGAAGCCTGAGCT  299
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAAATAAAATAGAGAGTAAATAACTATTCGTGCATCAGAAG-CTGAGCT  285

seq1  GAGCCCCTAGATTCTTCAGATTCTTAGTTCAGTGCACAGCCACTTCCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTAGATTCTTCAGATTCTTAGTTCAGTGCACAGCCACTTCCCAG  335

seq1  GGCTCAGATAGTGGCACTTGCCAGAGTCTTACTCATGCAGGACCCGTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGATAGTGGCACTTGCCAGAGTCTTACTCATGCAGGACCCGTCAC  385

seq1  TACTAATCTCTGGTCACAAGACACTAACAGGACTTTCCCGTGGTTGGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATCTCTGGTCACAAGACACTAACAGGACTTTCCCGTGGTTGGAAT  435

seq1  TGCTGTCACTTTCCGTAAGCATACACAGCGCAGAGCCCTAGAAGAAGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCACTTTCCGTAAGCATACACAGCGCAGAGCCCTAGAAGAAGCTG  485

seq1  AAGTTCCTTAGGGAAGGACAATGGTGCCCTAAAAATAAGATTATACAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTTAGGGAAGGACAATGGTGCCCTAAAAATAAGATTATACAGAT  535

seq1  TTGTGTGTGGATAGAAACCATTGGACGGCAGCTCCGAACAAAATCCCACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGGATAGAAACCATTGGACGGCAGCTCCGAACAAAATCCCACT  585

seq1  GTGTAGCCCAAACTGGCCTCTAAGTCATAGTGATCCTGCCTTGCTGCCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCCAAACTGGCCTCTAAGTCATAGTGATCCTGCCTTGCTGCCCC  635

seq1  TGGGTGCCGGGATCCTAGGCAAGCATCCCACACTGACATAGAGGTTTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCGGGATCCTAGGCAAGCATCCCACACTGACATAGAGGTTTGCT  685

seq1  TTGTATATTGAGTTATTCCTAACACATTTTTCCTGGAGGCTGCAGCTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTGAGTTATTCCTAACACATTTTTCCTGGAGGCTGCAGCTACT  735

seq1  AGAACCACAGAGAAACTCTACTGTGAGAAGTCAGGGACAACCATAAAGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACAGAGAAACTCTACTGTGAGAAGTCAGGGACAACCATAAAGGC  785

seq1  CTCTTTACAGTTACGCAGCAGGTAGCGCTGCGCAGAACAGTCCCCGTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACAGTTACGCAGCAGGTAGCGCTGCGCAGAACAGTCCCCGTGGG  835

seq1  TATCGTAAGCCTAACCCTTGGATCGTCACTCAGAACCGACTCACTCCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTAAGCCTAACCCTTGGATCGTCACTCAGAACCGACTCACTCCTAA  885

seq1  GGACTTGGCTCGACACACTTTCATCCCCCCTGTTTTTGCTTTGTTTTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGCTCGACACACTTTCATCCCCCCTGTTTTTGCTTTGTTTTCAT  935

seq1  TACTTAAATTCTACTGGGAAGCAAGGCCTTGATGCTGAATTGTAGATCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATTCTACTGGGAAGCAAGGCCTTGATGCTGAATTGTAGATCTC  985

seq1  ACATAAAATATCTGGGCTATTGAATTTGTCAGCTCTCGAGGAAGGCAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATATCTGGGCTATTGAATTTGTCAGCTCTCGAGGAAGGCAGAA  1035

seq1  TAATTGAAGTCCATTTATAAAGCTTCCGTGTCTCAAGAGCTGCAATATCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAAGTCCATTTATAAAGCTTCCGTGTCTCAAGAGCTGCAATATCA  1085

seq1  ACTGACAGCATCAACTGACAAAGGAGGAGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  ACTGACAGCATCAACTGACAAAGGAGGAGAATTC  1119