BAC Information

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BAC

Clone NameB6Ng01-005L24
Chromosome5 (Build37)
Map Location 127,430,581 - 127,506,408
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039178, LOC665760, LOC100040327
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L24.bB6Ng01-005L24.g
ACCDH842802DH842803
length1,0371,110
definitionDH842802|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L24, 5' end.DH842803|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,505,364 - 127,506,408)(127,430,581 - 127,431,688)
sequence
gaattcaaacatatggccaagaactcaaacacataagtctacaaaggcca
tacttattctaatcactacatatatcttctgtatattctgtggtgctttt
tccagtgttgaatattgtcaaggatggagacttaccctcctctacccagt
gaaatgggataataatgaattacataaaggataaccaagtcctctatcta
aagcaagctttctgtgtagccacagagctctgaccagatcgaaaggaatc
ccaccacttgactgagcatccagacaagtgagtatagtaaccagtacctg
gatcatgagtcatctggaattctctggttgctcctgtgtcacacacagca
cctggcagatctcatcctagctgatctgtccatcattgagtaaagtctgc
agcatctgcagcctgaatcaccatgggctacaaggaacacctttggaggc
acctcatgctgcacacagcacttaatatggttgaaaaggataaattcact
gatctcttcagtaatcttgacagcgatgactgccctcacctctgttctgt
gagaaggctgcatggtttgggagagctgtccctgagtttgtcaggtgtca
ctccattcccacagaaagagccaagtgttgggagtgagaggccttccttt
caaaaggttcagagactgcctggcatcaaggtgtaacgatgaaaggatgt
aggaaagttatgacaggattgataacatgccccagggaccacaaggaata
gaaacttcagaaggcagaaaacaaagatggaaaataaattgactgtagat
atcaactgattcaagactttctttacaattatgagagaattattaaacgg
gcatcacacagaccttaaaggctaatggggacctgctagtgcagtggtcc
aatcaagatcatgattctggcaaaagaaccggatgcctttcttctagcaa
gacaggagatgctgaaagagcagtagtgtacttatgtctcttactcctta
aaatgagattgtactttaaagattaattattatttat
gaattcattgaattaatggagtattgatttcagtggaggaggcatgttta
aacggtggaggttcaggctgtaaaggatttcaaagtggcttgtaaaccta
agcagagaagaacagcctagggctgaggtacctgcttggaaactgcttcc
agtgggagggcatttggctcagacacagaaggcgtcaacaacatgtctgt
ttaaaaattccatgtccatgacgggaattttggcgaagtattcaagagta
acaatcaaactgtagtacgtcccttcgttttgatgacaaatttgattttt
gaattttgagtgtgtgtatgaaaatatattaggccatttgaaagcaaaat
taacaactaacctaatggcatcgtgactgtggccattcaatctactcaat
ctctcctctcacttctctgccccccccccccacacacacacactacagat
ataaaagcatatggggactagtctacagggggatttttaaaaaaaaaaga
aagacaatctaataagcagcttatactatatagcaaacatttcctctaga
gagtaatagcaatattgtggggaggggtctatttgggggatgaagggaaa
tcagcaaagggcttgaacatcctcaggagatgtcatcctattgtaccaca
aggtactaaggagaaaggagagatgagaagccagggctgtggttactctg
gcaacaaagggggaattctttttattaaaaacaaaaaaaccaaactcaaa
tgtgaaaaaaaatccctttccaagcagtgaaggaagagatgaccaagcta
aagtactcagtggcccatcttagacttggggagaatcaagtttaaaggaa
atattgcttctaggcatgcaaggagaagaggcagctagaagcttcaggca
ggattggatgaccctgagccaaagctgccagcacataaatggggatggta
cattaaagacattttgacaggcctgctggaggctaggttgatgttgctta
aagaaataatactgactttgtaaccccctcaattaaagaaccgaagcagg
gcctaagaggacccaccatgaaaaacctccccattctcttccttactttg
agaggaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_127505364_127506408
seq2: B6Ng01-005L24.b_44_1080 (reverse)

seq1  ATAAATA------AATCTTTTAAAAGTAACAAATCTCATTTTAAAGGGAG  44
      |||||||      |||||||  ||||||   |||||||||||||  ||||
seq2  ATAAATAATAATTAATCTTT--AAAGTA--CAATCTCATTTTAA--GGAG  44

seq1  TTAAGAGACATAAGTACACTAACTGCTTCCTTTCAGCATCTCCTGTCTTG  94
       ||||||||||||||||||| ||||||  |||||||||||||||||||||
seq2  -TAAGAGACATAAGTACACT-ACTGCT--CTTTCAGCATCTCCTGTCTTG  90

seq1  CTAAGAAGAAAAGGCATCCGGTTCTTTTGCCAGAATCATGATCTTGATTT  144
      || ||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CT-AGAAG-AAAGGCATCCGGTTCTTTTGCCAGAATCATGATCTTGA-TT  137

seq1  GGACCACCTGCACTAGCAGGTCCCCATTAGCCCTTAAGGTCTGTGTGATG  194
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  GGACCA-CTGCACTAGCAGGTCCCCATTAGCCTTTAAGGTCTGTGTGATG  186

seq1  CCCGTTTAATAATTCTCTCATAATTGTAAAGAAAGTCTTGAATCAGTTGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTTAATAATTCTCTCATAATTGTAAAGAAAGTCTTGAATCAGTTGA  236

seq1  TATCTACAGTCAATTTATTTTCCATCTTTGTTTTCTGCCTTCTGAAGTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACAGTCAATTTATTTTCCATCTTTGTTTTCTGCCTTCTGAAGTTT  286

seq1  CTATTCCTTGTGGTCCCTGGGGCATGTTATCAATCCTGTCATAACTTTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTTGTGGTCCCTGGGGCATGTTATCAATCCTGTCATAACTTTCC  336

seq1  TACATCCTTTCATCGTTACACCTTGATGCCAGGCAGTCTCTGAACCTTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTTTCATCGTTACACCTTGATGCCAGGCAGTCTCTGAACCTTTT  386

seq1  GAAAGGAAGGCCTCTCACTCCCAACACTTGGCTCTTTCTGTGGGAATGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGGCCTCTCACTCCCAACACTTGGCTCTTTCTGTGGGAATGGA  436

seq1  GTGACACCTGACAAACTCAGGGACAGCTCTCCCAAACCATGCAGCCTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACCTGACAAACTCAGGGACAGCTCTCCCAAACCATGCAGCCTTCT  486

seq1  CACAGAACAGAGGTGAGGGCAGTCATCGCTGTCAAGATTACTGAAGAGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACAGAGGTGAGGGCAGTCATCGCTGTCAAGATTACTGAAGAGAT  536

seq1  CAGTGAATTTATCCTTTTCAACCATATTAAGTGCTGTGTGCAGCATGAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATTTATCCTTTTCAACCATATTAAGTGCTGTGTGCAGCATGAGG  586

seq1  TGCCTCCAAAGGTGTTCCTTGTAGCCCATGGTGATTCAGGCTGCAGATGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAAAGGTGTTCCTTGTAGCCCATGGTGATTCAGGCTGCAGATGC  636

seq1  TGCAGACTTTACTCAATGATGGACAGATCAGCTAGGATGAGATCTGCCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTTACTCAATGATGGACAGATCAGCTAGGATGAGATCTGCCAG  686

seq1  GTGCTGTGTGTGACACAGGAGCAACCAGAGAATTCCAGATGACTCATGAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGTGTGACACAGGAGCAACCAGAGAATTCCAGATGACTCATGAT  736

seq1  CCAGGTACTGGTTACTATACTCACTTGTCTGGATGCTCAGTCAAGTGGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACTGGTTACTATACTCACTTGTCTGGATGCTCAGTCAAGTGGTG  786

seq1  GGATTCCTTTCGATCTGGTCAGAGCTCTGTGGCTACACAGAAAGCTTGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCTTTCGATCTGGTCAGAGCTCTGTGGCTACACAGAAAGCTTGCT  836

seq1  TTAGATAGAGGACTTGGTTATCCTTTATGTAATTCATTATTATCCCATTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAGAGGACTTGGTTATCCTTTATGTAATTCATTATTATCCCATTT  886

seq1  CACTGGGTAGAGGAGGGTAAGTCTCCATCCTTGACAATATTCAACACTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTAGAGGAGGGTAAGTCTCCATCCTTGACAATATTCAACACTGG  936

seq1  AAAAAGCACCACAGAATATACAGAAGATATATGTAGTGATTAGAATAAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCACCACAGAATATACAGAAGATATATGTAGTGATTAGAATAAGT  986

seq1  ATGGCCTTTGTAGACTTATGTGTTTGAGTTCTTGGCCATATGTTTGAATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTTGTAGACTTATGTGTTTGAGTTCTTGGCCATATGTTTGAATT  1036

seq1  C  1045
      |
seq2  C  1037

seq1: chr5_127430581_127431688
seq2: B6Ng01-005L24.g_66_1175

seq1  GAATTCATTGAATTAATGGAGTATTGATTTCAGTGGAGGAGGCATGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAATTAATGGAGTATTGATTTCAGTGGAGGAGGCATGTTTA  50

seq1  AACGGTGGAGGTTCAGGCTGTAAAGGATTTCAAAGTGGCTTGTAAACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTGGAGGTTCAGGCTGTAAAGGATTTCAAAGTGGCTTGTAAACCTA  100

seq1  AGCAGAGAAGAACAGCCTAGGGCTGAGGTACCTGCTTGGAAACTGCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAAGAACAGCCTAGGGCTGAGGTACCTGCTTGGAAACTGCTTCC  150

seq1  AGTGGGAGGGCATTTGGCTCAGACACAGAAGGCGTCAACAACATGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGGGCATTTGGCTCAGACACAGAAGGCGTCAACAACATGTCTGT  200

seq1  TTAAAAATTCCATGTCCATGACGGGAATTTTGGCGAAGTATTCAAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTCCATGTCCATGACGGGAATTTTGGCGAAGTATTCAAGAGTA  250

seq1  ACAATCAAACTGTAGTACGTCCCTTCGTTTTGATGACAAATTTGATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAAACTGTAGTACGTCCCTTCGTTTTGATGACAAATTTGATTTTT  300

seq1  GAATTTTGAGTGTGTGTATGAAAATATATTAGGCCATTTGAAAGCAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGAGTGTGTGTATGAAAATATATTAGGCCATTTGAAAGCAAAAT  350

seq1  TAACAACTAACCTAATGGCATCGTGACTGTGGCCATTCAATCTACTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTAACCTAATGGCATCGTGACTGTGGCCATTCAATCTACTCAAT  400

seq1  CTCTCCTCTCACTTCTCTGCCCCCCCCCCCCACACACACACACTACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTCACTTCTCTGCCCCCCCCCCCCACACACACACACTACAGAT  450

seq1  ATAAAAGCATATGGGGACTAGTCTACAGGGGGATTTTTAAAAAAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCATATGGGGACTAGTCTACAGGGGGATTTTTAAAAAAAAAAGA  500

seq1  AAGACAATCTAATAAGCAGCTTATACTATATAGCAAACATTTCCTCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATCTAATAAGCAGCTTATACTATATAGCAAACATTTCCTCTAGA  550

seq1  GAGTAATAGCAATATTGTGGGGAGGGGTCTATTTGGGGGATGAAGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATAGCAATATTGTGGGGAGGGGTCTATTTGGGGGATGAAGGGAAA  600

seq1  TCAGCAAAGGGCTTGAACATCCTCAGGAGATGTCATCCTATTGTACCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAGGGCTTGAACATCCTCAGGAGATGTCATCCTATTGTACCACA  650

seq1  AGGTACTAAGGAGAAAGGAGAGATGAGAAGCCAGGGCTGTGGTTACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTAAGGAGAAAGGAGAGATGAGAAGCCAGGGCTGTGGTTACTCTG  700

seq1  GCAACAAAGGGGGAATTC-TTTTATTAAAAACAAAAAAACCAAACTCAAA  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAACAAAGGGGGAATTCTTTTTATTAAAAACAAAAAAACCAAACTCAAA  750

seq1  TGTGAAAAAAAATCCC-TTCCAAGCAGTGAAGGAAGAGATGACCAAGCTA  798
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGAAAAAAAATCCCTTTCCAAGCAGTGAAGGAAGAGATGACCAAGCTA  800

seq1  AAGTACTCAGTGGCCCATCTTAGACTT-GGGAGAACCAAGTTTAAAGGAA  847
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  AAGTACTCAGTGGCCCATCTTAGACTTGGGGAGAATCAAGTTTAAAGGAA  850

seq1  ATATTGCTTCTAGGCATGCAAGGAGAAGAGGCAGCTAGAAAGCTCAGGCA  897
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  ATATTGCTTCTAGGCATGCAAGGAGAAGAGGCAGCTAGAAGCTTCAGGCA  900

seq1  GGATTGGATGACCCTGAGCCAAAGCTGCCAGCAACATAAAGTGGGATTGG  947
      |||||||||||||||||||||||||||||||| ||||||| ||||  |||
seq2  GGATTGGATGACCCTGAGCCAAAGCTGCCAGC-ACATAAA-TGGGGATGG  948

seq1  TACATAAAAGACAATTTTGACA-GCCTGCTGGAGGCTAGGTTTGATG-TG  995
      ||||| |||||| ||||||||| ||||||||||||||||| |||||| ||
seq2  TACATTAAAGAC-ATTTTGACAGGCCTGCTGGAGGCTAGG-TTGATGTTG  996

seq1  CTAAAAGAAATAATACTGAC-TTGTAAACCCCTCAAATAAAAAGAACAG-  1043
      || ||||||||||||||||| |||||| |||||||| |  ||||||| | 
seq2  CTTAAAGAAATAATACTGACTTTGTAACCCCCTCAATT--AAAGAACCGA  1044

seq1  AGCAAGGCTTAGGA-GACCCACCAAG-AAAACACCCACAATCTCTTCCTT  1091
      |||| ||| || || ||||||||| | |||||  || || ||||||||||
seq2  AGCAGGGCCTAAGAGGACCCACCATGAAAAACCTCCCCATTCTCTTCCTT  1094

seq1  ACTTTAAAAGGGAAAAC  1108
      ||||| | | |||||||
seq2  ACTTTGAGA-GGAAAAC  1110