BAC Information

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BAC

Clone NameB6Ng01-005P18
Chromosome5 (Build37)
Map Location 84,044,603 - 84,201,212
singlet/doubletdoublet
Overlap geneLOC100039608
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005P18.bB6Ng01-005P18.g
ACCDH842967DH842968
length9481,143
definitionDH842967|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P18, 5' end.DH842968|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,200,686 - 84,201,212)(84,044,603 - 84,045,755)
sequence
gaattccctcctatagctcaatcttctgatcttctggtcaagtacctagg
ctttcttttatcccctaacagattagaatttatctcatttgtgtgcagtg
cacattctaatcaccatggaagagataagagattctttccttcctgcatc
tgttgggtaccttcagatttggattttttattaaatcattttaaatattt
atattctaaatgttgccccccttttctgtccctttctccaagttcttcac
accatcctccctccccttagcttctgagagggtactcctcccaactgacc
ccccttcacaaaacccctatctccatctcaccctcaccagcatcctcctt
ccctggggcatcaagtttctacaagggtaagcacatcctctctcactcag
tccagacaacgcagtctgcagctacacgtgtatccagggccacagaccag
ccaacgtatgctctttggttggtggtttagactctaggagctctgagggg
tccaggttagttgatactgctgttcttcttattggttgcaatccccttca
gctccttcagtccttcccctaactcttcaattgggatccccgaccttagt
ccaatgtttgagtgtaaatatctacatctgtcttagtcagctgctggtag
agcctcctttagaataaccacactaggctcctgtctgaaagcacaacatg
acatcagtaatagtgtcagggtttggaacctacacatgggatgtaaccaa
gttgagccaatcattggatggcctttctttcagtttctactctttttgcc
catgcattttctttagacaggaacaattctgggtcaaaaattttaaagat
gtatgggtggccctatgcctgaactagggaccatatttatctactgtatg
tggtttattcaggctccatctcccattgttgggcattcagctaagtca
gaattcccttcattagcatagatgactcaaagttatgtaagtttcagatt
attttcatcataaggaaaagttacacacctcttttaatgactccttatat
ttgccaacgatacatggagtctaatgccttcccaagagcaaatttctcta
tgactttaaggttgcttttcaacttggtattacatttattaataaaaaca
aaagtacttggatatctggtgatagtgattacgcagaatcagtgtattca
ttggaactccttgggtacagtattcattatcaccgtgagtaaatgagcat
gagattgagagttttgaaatgcagtcatattgtattatgtattatagaga
taaacagatacgtgtgaagtcagtgagctgacattcttggtaaacataag
ctccaagtcactgagtaaaggagttacttgctcaaaatgcctatgctgta
ttatttcaattcaggatgtcaatttgggaaaaaaaaatgttactgtaaat
atacttacccctactctatcttatccatagatgaaataagcttatcatct
aagtgtttgaagtatattaatatgaaacattaaatgcaaaatatcagcat
ttatttgttaagtacctcaatttcctagtcaaatctatctgtgttacaca
aatcctccctatttaccacgctgcatcttactatttattttccactagta
gcttgacgatgccacacaaacagtctaaatagcataaggatttgatatgg
ttgtggaagattttatgaagacaggttgcaagtatagtctcaaaaatcac
agtcaagatgggaattattaagcagagattttctgggacaaaatatttat
cttcagaaatttctttttgagtgaatttcgaaagtttaatgttcagctgt
tggccaaaatatagcacattttaataaaattatattcaattttctatgac
cattccttcatgttgactttgctccctggttttgttatcttagacaccta
agctccaatgaacactacctgccctcatgaaagtactgatacatgcatac
aaagcacatatatgttactagaaaaacttcataataaatcctctttgatt
tcattattggtgggggctcatgatcctgagaattcttgcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84200686_84201212
seq2: B6Ng01-005P18.b_46_572 (reverse)

seq1  AAGAACAGCAGTATCAACTAACCTGGACCCCTCAGAGCTCCTAGAGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCAGTATCAACTAACCTGGACCCCTCAGAGCTCCTAGAGTCTA  50

seq1  AACCACCAACCAAAGAGCATACGTTGGCTGGTCTGTGGCCCTGGATACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAACCAAAGAGCATACGTTGGCTGGTCTGTGGCCCTGGATACAC  100

seq1  GTGTAGCTGCAGACTGCGTTGTCTGGACTGAGTGAGAGAGGATGTGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTGCAGACTGCGTTGTCTGGACTGAGTGAGAGAGGATGTGCTTA  150

seq1  CCCTTGTAGAAACTTGATGCCCCAGGGAAGGAGGATGCTGGTGAGGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTAGAAACTTGATGCCCCAGGGAAGGAGGATGCTGGTGAGGGTGA  200

seq1  GATGGAGATAGGGGTTTTGTGAAGGGGGGTCAGTTGGGAGGAGTACCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGATAGGGGTTTTGTGAAGGGGGGTCAGTTGGGAGGAGTACCCTC  250

seq1  TCAGAAGCTAAGGGGAGGGAGGATGGTGTGAAGAACTTGGAGAAAGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCTAAGGGGAGGGAGGATGGTGTGAAGAACTTGGAGAAAGGGAC  300

seq1  AGAAAAGGGGGGCAACATTTAGAATATAAATATTTAAAATGATTTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGGGGCAACATTTAGAATATAAATATTTAAAATGATTTAATAA  350

seq1  AAAATCCAAATCTGAAGGTACCCAACAGATGCAGGAAGGAAAGAATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAAATCTGAAGGTACCCAACAGATGCAGGAAGGAAAGAATCTCT  400

seq1  TATCTCTTCCATGGTGATTAGAATGTGCACTGCACACAAATGAGATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCCATGGTGATTAGAATGTGCACTGCACACAAATGAGATAAAT  450

seq1  TCTAATCTGTTAGGGGATAAAAGAAAGCCTAGGTACTTGACCAGAAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTGTTAGGGGATAAAAGAAAGCCTAGGTACTTGACCAGAAGATC  500

seq1  AGAAGATTGAGCTATAGGAGGGAATTC  527
      |||||||||||||||||||||||||||
seq2  AGAAGATTGAGCTATAGGAGGGAATTC  527

seq1: chr5_84044603_84045755
seq2: B6Ng01-005P18.g_69_1211

seq1  GAATTCCCTTCATTAGCATAGATGACTCAAAGTTATGTAAGTTTCAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCATTAGCATAGATGACTCAAAGTTATGTAAGTTTCAGATT  50

seq1  ATTTTCATCATAAGGAAAAGTTACACACCTCTTTTAATGACTCCTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCATAAGGAAAAGTTACACACCTCTTTTAATGACTCCTTATAT  100

seq1  TTGCCAACGATACATGGAGTCTAATGCCTTCCCAAGAGCAAATTTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAACGATACATGGAGTCTAATGCCTTCCCAAGAGCAAATTTCTCTA  150

seq1  TGACTTTAAGGTTGCTTTTCAACTTGGTATTACATTTATTAATAAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTAAGGTTGCTTTTCAACTTGGTATTACATTTATTAATAAAAACA  200

seq1  AAAGTACTTGGATATCTGGTGATAGTGATTACGCAGAATCAGTGTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTGGATATCTGGTGATAGTGATTACGCAGAATCAGTGTATTCA  250

seq1  TTGGAACTCCTTGGGTACAGTATTCATTATCACCGTGAGTAAATGAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTCCTTGGGTACAGTATTCATTATCACCGTGAGTAAATGAGCAT  300

seq1  GAGATTGAGAGTTTTGAAATGCAGTCATATTGTATTATGTATTATAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAGAGTTTTGAAATGCAGTCATATTGTATTATGTATTATAGAGA  350

seq1  TAAACAGATACGTGTGAAGTCAGTGAGCTGACATTCTTGGTAAACATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGATACGTGTGAAGTCAGTGAGCTGACATTCTTGGTAAACATAAG  400

seq1  CTCCAAGTCACTGAGTAAAGGAGTTACTTGCTCAAAATGCCTATGCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTCACTGAGTAAAGGAGTTACTTGCTCAAAATGCCTATGCTGTA  450

seq1  TTATTTCAATTCAGGATGTCAATTTGGGAAAAAAAAATGTTACTGTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAATTCAGGATGTCAATTTGGGAAAAAAAAATGTTACTGTAAAT  500

seq1  ATACTTACCCCTACTCTATCTTATCCATAGATGAAATAAGCTTATCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACCCCTACTCTATCTTATCCATAGATGAAATAAGCTTATCATCT  550

seq1  AAGTGTTTGAAGTATATTAATATGAAACATTAAATGCAAAATATCAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGAAGTATATTAATATGAAACATTAAATGCAAAATATCAGCAT  600

seq1  TTATTTGTTAAGTACCTCAATTTCCTAGTCAAATCTATCTGTGTTACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTAAGTACCTCAATTTCCTAGTCAAATCTATCTGTGTTACACA  650

seq1  AATCCTCCCTATTTACCACGCTGCATCTTACTATTTATTTTCCACTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCCTATTTACCACGCTGCATCTTACTATTTATTTTCCACTAGTA  700

seq1  GCTTGACGATGCCACACAAACAGTCTAAATAGCATAAGGATTTGATATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACGATGCCACACAAACAGTCTAAATAGCATAAGGATTTGATATGG  750

seq1  TTGTGGAAGATTTTATGAAGACAGGTTGCAAGTATAGTCTCAAAAATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAAGATTTTATGAAGACAGGTTGCAAGTATAGTCTCAAAAATCAC  800

seq1  AGTCAAGATGGGAATTATTAAGCAGAGATTTTCTGGGACAAAATATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGATGGGAATTATTAAGCAGAGATTTTCTGGGACAAAATATTTAT  850

seq1  CTTCAGAAATTTCTTTTTGAGTGAATTTCGAAAGTTTAATGTTCAGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTCAGAAATTTCTTTTTGAGTGAATTTCGAAAGTTTAATGTTCA-GCTG  899

seq1  TTGGCCAAAATATAGCACATTTTAATAAAATTATATTCAATTTTCTATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAAAATATAGCACATTTTAATAAAATTATATTCAATTTTCTATGA  949

seq1  CCATTCCTTCATGTTGACTTTGCTCCCTGGTTATGTTATCTTAGACAACC  1000
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CCATTCCTTCATGTTGACTTTGCTCCCTGGTTTTGTTATCTTAGAC-ACC  998

seq1  TAAGCTCCAATGAACACTACCTGCCCTCAATGAAAGTACTGATACATGCA  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAGCTCCAATGAACACTACCTGCCCTC-ATGAAAGTACTGATACATGCA  1047

seq1  TACAATATGCACATATATGTTTACTAG-AAAACTTCATAATTAAATCTCT  1099
      ||||  | ||||||||||| ||||||| ||||||||||||| ||  ||||
seq2  TACA--AAGCACATATATG-TTACTAGAAAAACTTCATAATAAATCCTCT  1094

seq1  TTGTATTTTCATGTATTGGTGGGGGTCTATGATCCCTGAAGATTCTTTGC  1149
      |||   |||||| ||||||||||||   ||||| |||||  |||| ||||
seq2  TTG--ATTTCAT-TATTGGTGGGGGCTCATGAT-CCTGAGAATTC-TTGC  1139

seq1  ACAC  1153
      ||||
seq2  ACAC  1143