BAC Information

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BAC

Clone NameB6Ng01-006F23
Chromosome5 (Build37)
Map Location 36,724,401 - 36,861,663
singlet/doubletdoublet
Overlap geneSorcs2, Grpel1, Ccdc96, Tbc1d14
Upstream geneHmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, 2310020A21Rik
Downstream geneD5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F23.bB6Ng01-006F23.g
ACCDH843250DH843251
length1261,101
definitionDH843250|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F23, 5' end.DH843251|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,861,538 - 36,861,663)(36,724,401 - 36,725,517)
sequence
tcctcagtcaggcaggagagtggagggtgctttggtgttttttgttttta
gccctagagaggccagggctggtatctgtctatggggcataagcatgtga
agcaatggagggatgggggtggggtg
gaattcagtctctcccttcagctctctggaactgggcttctgtgacccat
gaccaagcatcctggttttgtggcccacattgcagagcacacaagcagag
aagggagtgagagcacccaaccctcacatagcttgaaagctaactgggaa
gagttgtcggccagaacacagacaatcaaagccaagagcatggtgtgcag
atgcggggagaagagggagacaatgcagcatcccagagatgaaggtcttg
agtgacgttctcaggagaagccctacactgtgctgcacccatcttcagtt
tctgtatgaatcacacacacacatgcacacaccacacacacacaccacac
atacaccacacacgtgcacatatagacacacacaacatacacatatacac
acatacatgcataggcacatacacacacaccacacacacatatacacacc
acacatacaaacacatgtataggcacataaacatgcacacacacatacac
gtgcacggacgcacacaccacacccacactgccaccaccacaaggacaca
aagctactgggcactcaggtcacaggagtgactcccacccagataacagg
acactcttgatagaattatgcagaccaacactggagccgtcattatctac
ttccactaccataaaaaattcccttttcaatttcttccagaggagagaga
ataaaagggattaaggattagaggattagagatggtgtcttagccacaca
tggccccttctgcaagtggcccccacctcagcatgcctgcttctctctta
atggcccttgggatgtgtctgtacttgacggaattccacaagaataaact
tcgtcctttagaaagcaacctcagcgagtgttgggggatgaccacggcca
catgccactgcctgcctgaggacccaccctaggttctctctctttgcccc
caccacctctagaagctttccgagtctcaaggcagaagtttggggattcc
tttcttgtatggaataggcttcagtgtcagagccctcattatgcctggaa
aaatattgcaaaaacatgagattgctgaacgtctgagcatgactcactcc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_36861538_36861663
seq2: B6Ng01-006F23.b_51_176 (reverse)

seq1  CACCCCACCCCCATCCCTCCATTGCTTCACATGCTTATGCCCCATAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCCCATCCCTCCATTGCTTCACATGCTTATGCCCCATAGACA  50

seq1  GATACCAGCCCTGGCCTCTCTAGGGCTAAAAACAAAAAACACCAAAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGCCCTGGCCTCTCTAGGGCTAAAAACAAAAAACACCAAAGCAC  100

seq1  CCTCCACTCTCCTGCCTGACTGAGGA  126
      ||||||||||||||||||||||||||
seq2  CCTCCACTCTCCTGCCTGACTGAGGA  126

seq1: chr5_36724401_36725517
seq2: B6Ng01-006F23.g_67_1167

seq1  GAATTCAGTCTCTCCCTTCAGCTCTCTGGAACTGGGCTTCTGTGACCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCTCCCTTCAGCTCTCTGGAACTGGGCTTCTGTGACCCAT  50

seq1  GACCAAGCATCCTGGTTTTGTGGCCCACATTGCAGAGCACACAAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGCATCCTGGTTTTGTGGCCCACATTGCAGAGCACACAAGCAGAG  100

seq1  AAGGGAGTGAGAGCACCCAACCCTCACATAGCTTGAAAGCTAACTGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGTGAGAGCACCCAACCCTCACATAGCTTGAAAGCTAACTGGGAA  150

seq1  GAGTTGTCGGCCAGAACACAGACAATCAAAGCCAAGAGCATGGTGTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCGGCCAGAACACAGACAATCAAAGCCAAGAGCATGGTGTGCAG  200

seq1  ATGCGGGGAGAAGAGGGAGACAATGCAGCATCCCAGAGATGAAGGTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGGGAGAAGAGGGAGACAATGCAGCATCCCAGAGATGAAGGTCTTG  250

seq1  AGTGACGTTCTCAGGAGAAGCCCTACACTGTGCTGCACCCATCTTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACGTTCTCAGGAGAAGCCCTACACTGTGCTGCACCCATCTTCAGTT  300

seq1  TCTGTATGAATCACACACACACATGCACACACCACACACACACACCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGAATCACACACACACATGCACACACCACACACACACACCACAC  350

seq1  ATACACCACACACGTGCACATATAGACACACACAACATACACATATACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCACACACGTGCACATATAGACACACACAACATACACATATACAC  400

seq1  ACATACATGCATAGGCACATACACACACACCACACACACATATACACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCATAGGCACATACACACACACCACACACACATATACACACC  450

seq1  ACACATACAAACACATGTATAGGCACATAAACATGCACACACACATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAAACACATGTATAGGCACATAAACATGCACACACACATACAC  500

seq1  GTGCACGGACGCACACACCACACCCACACTGCCACCACCACAAGGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGGACGCACACACCACACCCACACTGCCACCACCACAAGGACACA  550

seq1  AAGCTACTGGGCACTCAGGTCACAGGAGTGACTCCCACCCAGATAACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTGGGCACTCAGGTCACAGGAGTGACTCCCACCCAGATAACAGG  600

seq1  ACACTCTTGATAGAATTATGCAGACCAACACTGGAGCCGTCATTATCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTGATAGAATTATGCAGACCAACACTGGAGCCGTCATTATCTAC  650

seq1  TTCCACTACCATAAAAAATTCCCTTTTCAATTTCTTCCAGAGGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTACCATAAAAAATTCCCTTTTCAATTTCTTCCAGAGGAGAGAGA  700

seq1  ATAAAAGGGATTAAGGATTAGAGGATTAGAGATGGTGTCTTAGCCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGATTAAGGATTAGAGGATTAGAGATGGTGTCTTAGCCACACA  750

seq1  TGGCCCCTTCTGCAAGTGGCCCCCACCTCAGCATGCCTGCTTCTCTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTTCTGCAAGTGGCCCCCACCTCAGCATGCCTGCTTCTCTCTTA  800

seq1  ATGGCCCTTGGGATGTGTCTGTACTTGACGGAATTCCACAAGAATAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTTGGGATGTGTCTGTACTTGACGGAATTCCACAAGAATAAACT  850

seq1  TCGTCCTTTAGAAAGCAACCTCAGCGAGTGTTGGGGGATGACCACGGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCGTCCTTTAGAAAGCAACCTCAGCGAGTGTTGGGGGATGACCAC-GGCC  899

seq1  ACATGCCACTGCCTGCCTGAGGACCCACCCTAGGTTCCTCTCTCTTTGCC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATGCCACTGCCTGCCTGAGGACCCACCCTAGGTT-CTCTCTCTTTGCC  948

seq1  CCCACCACCTCTAGAAGCTTTCCGAGTCCTCCAGGCAGAAGGTTTGGGGA  1000
      ||||||||||||||||||||||||||| ||| |||||||| |||||||||
seq2  CCCACCACCTCTAGAAGCTTTCCGAGT-CTCAAGGCAGAA-GTTTGGGGA  996

seq1  TTTCCTTTCTTGTAGTGGAATAAGGGCTCAGTGTCAGAGCCCTCATTTAT  1050
       ||||||||||||| |||||| |||  ||||||||||||||||||||   
seq2  -TTCCTTTCTTGTA-TGGAAT-AGGCTTCAGTGTCAGAGCCCTCATT--A  1041

seq1  TGCTTGAGAAAAATA-TGCAAAAACATGAGATTGCTTGAACACAGTCTGA  1099
      ||| || |||||||| ||||||||||||||||||| |||||   ||||||
seq2  TGCCTG-GAAAAATATTGCAAAAACATGAGATTGC-TGAAC---GTCTGA  1086

seq1  GGCCATGACTCAACTCCT  1117
      |  |||||||| ||||||
seq2  G--CATGACTC-ACTCCT  1101