BAC Information

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BAC

Clone NameB6Ng01-006I01
Chromosome10 (Build37)5 (Build37)
Map Location 104,055,087 - 104,055,5833,226,561 - 3,227,465
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006I01.bB6Ng01-006I01.g
ACCDH843343DH843344
length6431,001
definitionDH843343|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I01, 5' end.DH843344|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,055,087 - 104,055,583)(3,226,561 - 3,227,465)
sequence
gaattccaggacggggggggtggggggggacaatatatagcaaatctgta
gctaacattaaagtaaatggagaaaaacttgaagcaataccgtaaaatca
gggactagaaaaggctgctaactttccccttcttcctattcaatgtagca
cttgaagtcctagccagagcaattagataacaaaaggagatcaagggaat
atgaattggaaaggaagaagtcaaaacagcactttttgcagatgatatgg
tagcatatataagtgaccctaaaaattccaccagagaactcctaaacctg
ataaacagcttcaatgctggacctaaacttaactcatacaaatcactggc
ctttctctacacaaaggataaacaggctgagaaagaaattagggaaacaa
cacccttcacaaaagtcacaaataatataaaatatcttggagtaattcta
actaagggagataaaggtctgtacaataagaaattcaagtctctgaataa
agaaattgaagatctcagaagatggaaagatcttccatgctcatggattg
gcaagattaatatagtataaatggcgatcctgccaacagcatatctacag
attcaatgcaatccccatcataattccagctcaattcttcaca
gaattctttgctaaccacatgtattggtccgccttacattgtgtagtttg
ttgggactctgcaaactcaggctgattggatgcatgtgctgatgcaaggc
acatggaggacacgtgatatttggagggtataaatagaactccacagagt
gatggagacagagcttggcttgctggtatagctagctgtgcaacgcctgt
tcattgatcttcgcttccctgagagaggcacagccaaggacttctcttgc
tgtctctcctggtacctcctgctcattcgagccaaggcagaggcctggtt
gtctctgacagatagtgccaccactgctgattcctgtttgctatggtgac
tctactgaactggactattgatgtatctatgttttcgagttgatcgagct
gcccctgcaaatatgggaactgaactgctgatattatattccagataata
cagatgggagttgctccaggtagcctttcaaaacagatctactccctgcc
ccatcctttctttcccacaacttctggtgggtggtgggctaaaaaggagg
ttaaagcatttaagaaccatcattaaaaataaggtttgaaaacaactaaa
gctaaaaatctttcacaaaattcaaggcatgaaaacaatggtcatttcct
taatcgattgtggccactttgtcttttccagtcaagaaaaaatgagagct
aggttaaaactgtttctattttgctttcttttcttttttctttctcaaaa
taaaacacacttctaattttttattgggaaaatcaaacaaatgatggaat
aattttcttggtcaagatctgtaggaggtggttctgatgctgtcctattc
cccagttggttcttgatctgtcagtaaagaaagccatgggccaattgctg
gggtgaagggacaggtgagacttctagtctctggaggaggcaaggaaaag
caggaaggagagagagtttctgcctgcttggggagatagctacagtcatg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104055087_104055583
seq2: B6Ng01-006I01.b_199_687 (reverse)

seq1  TGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGAT-  49
      |||||||||||| ||||||| |||||||||||||||||||||||||||| 
seq2  TGAAGAATTGAGCTGGAATTATGATGGGGATTGCATTGAATCTGTAGATA  50

seq1  TGCTTTTGGCAAGATAGCCATTTTTACTATATTGATCCTGCCGATCCATG  99
      |||| |||||| ||| ||||||| ||||||||| ||| |||| |||||||
seq2  TGCTGTTGGCAGGATCGCCATTTATACTATATTAATCTTGCCAATCCATG  100

seq1  AGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTC  149
      ||||||| ||||||||||||||||||||||||||   ||||||||| |||
seq2  AGCATGGAAGATCTTTCCATCTTCTGAGATCTTC---AATTTCTTTATTC  147

seq1  AGAGACATGAAGTTCTTGTCATACAGATCTTTCACTTCCTTAGTTAGAGT  199
      |||||| |||| ||||| |  |||||| ||||  || ||||||||||| |
seq2  AGAGACTTGAATTTCTTATTGTACAGACCTTTATCTCCCTTAGTTAGAAT  197

seq1  CACGCCAAGGAATTTTATATTATTTGTGGCTATTGAGAAGGGTGTTGTTT  249
       || |||||  ||||||||||||||||| || ||| ||||||||||||||
seq2  TACTCCAAGATATTTTATATTATTTGTGACTTTTGTGAAGGGTGTTGTTT  247

seq1  CCCTAATTTCTTTCTCAGCCTGTTTGTCCTTTGTGTAGAGAAAGCCCATT  299
      ||||||||||||||||||||||||| |||||||||||||||||| ||| |
seq2  CCCTAATTTCTTTCTCAGCCTGTTTATCCTTTGTGTAGAGAAAGGCCAGT  297

seq1  GACTTGTTTGAGTTAATTTTATATCCAGCTACTTCACTGAAGCTGTATAT  349
      || |||| |||||||| ||||  |||||      || ||||||||| |||
seq2  GATTTGTATGAGTTAAGTTTAGGTCCAG------CATTGAAGCTGTTTAT  341

seq1  TAGGTTTAGGAGTTCTCTGGTTGAATTTTTAGGGTCACTTATATATACTA  399
       |||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  CAGGTTTAGGAGTTCTCTGGTGGAATTTTTAGGGTCACTTATATATGCTA  391

seq1  TCATATCATCTGCAAAAAGTGATATTTTGACTTCTTCCTTTCCAATTTGT  449
       |||||||||||||||||||| | |||||||||||||||||||||||  |
seq2  CCATATCATCTGCAAAAAGTGCTGTTTTGACTTCTTCCTTTCCAATTCAT  441

seq1  ATCCCCTTGATCTCCTTTTGTTGTCTAATTGCTCTGGCTAGGACTTCA  497
      || ||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTCCCTTGATCTCCTTTTGTTATCTAATTGCTCTGGCTAGGACTTCA  489

seq1: chr5_3226561_3227465
seq2: B6Ng01-006I01.g_172_1066

seq1  AGGACACGTGATATTTGGAGGGTATAAATAGAACTCCACAGAGTGATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACGTGATATTTGGAGGGTATAAATAGAACTCCACAGAGTGATGGA  50

seq1  GACAGAGCTTGGCTTGCTGGTATAGCTAGCTGTGCAACGCCTGTTCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCTTGGCTTGCTGGTATAGCTAGCTGTGCAACGCCTGTTCATTG  100

seq1  ATCTTCGCTTCCCTGAGAGAGGCACAGCCAAGGACTTCTCTTGCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCGCTTCCCTGAGAGAGGCACAGCCAAGGACTTCTCTTGCTGTCTC  150

seq1  TCCTGGTACCTCCTGCTCATTCGAGCCAAGGCAGAGGCCTGGTTGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTACCTCCTGCTCATTCGAGCCAAGGCAGAGGCCTGGTTGTCTCT  200

seq1  GACAGATAGTGCCACCACTGCTGATTCCTGTTTGCTATGGTGACTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATAGTGCCACCACTGCTGATTCCTGTTTGCTATGGTGACTCTACT  250

seq1  GAACTGGACTATTGATGTATCTATGTTTTCGAGTTGATCGAGCTGCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGACTATTGATGTATCTATGTTTTCGAGTTGATCGAGCTGCCCCT  300

seq1  GCAAATATGGGAACTGAACTGCTGATATTATATTCCAGATAATACAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATGGGAACTGAACTGCTGATATTATATTCCAGATAATACAGATG  350

seq1  GGAGTTGCTCCAGGTAGCCTTTCAAAACAGATCTACTCCCTGCCCCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGCTCCAGGTAGCCTTTCAAAACAGATCTACTCCCTGCCCCATCC  400

seq1  TTTCTTTCCCACAACTTCTGGTGGGTGGTGGGCTAAAAAGGAGGTTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCCACAACTTCTGGTGGGTGGTGGGCTAAAAAGGAGGTTAAAG  450

seq1  CATTTAAGAACCATCATTAAAAATAAGGTTTGAAAACAACTAAAGCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGAACCATCATTAAAAATAAGGTTTGAAAACAACTAAAGCTAAA  500

seq1  AATCTTTCACAAAATTCAAGGCATGAAAACAATGGTCATTTCCTTAATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCACAAAATTCAAGGCATGAAAACAATGGTCATTTCCTTAATCG  550

seq1  ATTGTGGCCACTTTGTCTTTTCCAGTCAAGAAAAAATGAGAGCTAGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCCACTTTGTCTTTTCCAGTCAAGAAAAAATGAGAGCTAGGTTA  600

seq1  AAACTGTTTCTATTTTGCTTTCTTTTCTTTTTTCTTTCTCAAAATAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTTCTATTTTGCTTTCTTTTCTTTTTTCTTTCTCAAAATAAAAC  650

seq1  ACACTTCTAATTTTTTATTGGGAAAATCAAACAAATGATGGAATAA-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACTTCTAATTTTTTATTGGGAAAATCAAACAAATGATGGAATAATTTT  700

seq1  CTTGGTCAAGATCTGTAGGAGGTGGTTCTGATGCTGTCCTATTCCCCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCAAGATCTGTAGGAGGTGGTTCTGATGCTGTCCTATTCCCCAGT  750

seq1  TGGTTCTTGATCTGTCAGTAAAGAAAGCCATGGGCCAATTGCTGGGTGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TGGTTCTTGATCTGTCAGTAAAGAAAGCCATGGGCCAATTGCTGGGGTGA  800

seq1  AGGGACAGGTGAGACTTCTAGGTCCCTGGAGGAGGCAAGGAAAAGCAAGG  849
      |||||||||||||||||||| ||| ||||||||||||||||||||| |||
seq2  AGGGACAGGTGAGACTTCTA-GTCTCTGGAGGAGGCAAGGAAAAGC-AGG  848

seq1  GAGGAGAGGAGGAGTTTCTGCCGTGCTTTGGGGGAAGAAGAAGCCAACAG  899
       |||||||   ||||||||||| ||||| |||      |||   | ||||
seq2  AAGGAGAG--AGAGTTTCTGCC-TGCTTGGGG------AGATAGCTACAG  889

seq1  TCATGT  905
      ||||||
seq2  TCATGT  895